Re: [ccp4bb] symmetry related molecules

2012-04-12 Thread Bosch, Juergen 
CONTACT (CCP4) , PISA, ProFunc
What do you mean by analyse ? Residues contacting each other, surface 
complementarity, buried surface area ?

Jürgen

On Apr 13, 2012, at 12:15 AM, Maher Alayyoubi wrote:

Hi guys,

Does any body know if there is a software that would analyse the
interface between a protein molecule and its symmetry related
molecules in the crystal structure?

Thank you,


Maher

..
Jürgen Bosch
Johns Hopkins University
Bloomberg School of Public Health
Department of Biochemistry & Molecular Biology
Johns Hopkins Malaria Research Institute
615 North Wolfe Street, W8708
Baltimore, MD 21205
Office: +1-410-614-4742
Lab:  +1-410-614-4894
Fax:  +1-410-955-2926
http://web.mac.com/bosch_lab/

[ccp4bb] symmetry related molecules

2012-04-12 Thread Maher Alayyoubi 
Hi guys,

Does any body know if there is a software that would analyse the
interface between a protein molecule and its symmetry related
molecules in the crystal structure?

Thank you,


Maher

Re: [ccp4bb] Symmetry Related molecules

2011-08-05 Thread Yuri 

Thank you all,
Best

On Fri, 05 Aug 2011 09:19:55 +0200, Thomas Holder wrote:

On 08/05/2011 05:22 AM, Albert Guskov wrote:

have a look at SuperSym plugin for pymol
http://www.pymolwiki.org/index.php/SuperSym


Or the Supercell script. It has less features than SuperSym but does
not require cctbx module.

http://pymolwiki.org/index.php/Supercell

Cheers,
  Thomas


--
Yuri Pompeu

Re: [ccp4bb] Symmetry related molecules

2011-08-05 Thread Ramanuj Banerjee 
symmetry related molecules can be generated in pymol by :
1. opening the coordinates in pymol
2. Actions, generate, symmetry mates, radius

Re: [ccp4bb] Symmetry Related molecules

2011-08-05 Thread Thomas Holder 

On 08/05/2011 05:22 AM, Albert Guskov wrote:

have a look at SuperSym plugin for pymol
http://www.pymolwiki.org/index.php/SuperSym


Or the Supercell script. It has less features than SuperSym but does not 
require cctbx module.


http://pymolwiki.org/index.php/Supercell

Cheers,
  Thomas

--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen

Re: [ccp4bb] Symmetry Related molecules

2011-08-04 Thread Albert Guskov 
Hi Yuri,
have a look at SuperSym plugin for pymol
http://www.pymolwiki.org/index.php/SuperSym
Best regards,
Albert
*Albert GUSKOV (Dr) *| Research Fellow | Division of Structural &
Computational Biology | Nanyang Technological University
Proteos 7-01, Biopolis Drive 61, Singapore 138673 Tel: (65) 6586-9690 GMT+8h
 | Cell: (65) 8366-2779 | Email: a.gus...@ntu.edu.sg | Web: www.ntu.edu.sg

2011/8/5 Yuri 

> Whats the best way to visualize all the symmetry related molecules, I know
> COOT will show them as backbone.
> I was looking for publication quality images...PyMol maybe?
> thank you for suggestions
>
> --
> Yuri Pompeu
>

[ccp4bb] Symmetry Related molecules

2011-08-04 Thread Yuri 
Whats the best way to visualize all the symmetry related molecules, I 
know COOT will show them as backbone.

I was looking for publication quality images...PyMol maybe?
thank you for suggestions

--
Yuri Pompeu