[ccp4bb] trouble with imosflm cell refinement
Dear all, I cannot get imosflm refining any cell, the program simply stalls: all you have is the little E at the top right rotating, but no messages, no errors, no crashes. 'Abort' doesn't have any effect either, nor it has the sequence 'Pause'-'Continue'. I have this problem with: OS: Mac (intel) 10.5.8 ccp4: 6.1.2-4 (compiled via fink, this is imosflm 1.0.0 with ipmosflm 7.0.5) OR: OS: Mac (intel) 10.5.8 imosflm: 1.0.3-1 (compiled via fink, it also uses ipmosflm 7.0.5) In the second case there is a warning: /sw/bin/imosflm: line 204: type: /sw/bin/wish8.5: not found Environment variable MOSFLM_WISH does not point to a valid wish8.4 executable! Testing default wish8.4 executable (/sw/bin/wish8.4). Running imosflm with default wish8.4 executable (/sw/bin/wish8.4). which does not prevent the program to otherwise run. All other functions (indexation, strategy, integration) work. Any ideas? Best regards, -- Miguel Architecture et Fonction des Macromolécules Biologiques (UMR6098) CNRS, Universités d'Aix-Marseille I II Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France Tel : +33(0) 491 82 55 93 Fax: +33(0) 491 26 67 20 e-mail: miguel.ortiz-lombar...@afmb.univ-mrs.fr Web: http://www.pangea.org/mol/spip.php?rubrique2 -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean.
Re: [ccp4bb] trouble with imosflm cell refinement
Dear Miguel, You may find that replacing the ipmosflm binary with the one from Harry's web page may be more reliable - typically these sorts of things come down to gfortran or g77 being a little keen in optimization. http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ Cheers, Graeme 2009/9/30 Miguel Ortiz Lombardia miguel.ortiz-lombar...@afmb.univ-mrs.fr: Dear all, I cannot get imosflm refining any cell, the program simply stalls: all you have is the little E at the top right rotating, but no messages, no errors, no crashes. 'Abort' doesn't have any effect either, nor it has the sequence 'Pause'-'Continue'. I have this problem with: OS: Mac (intel) 10.5.8 ccp4: 6.1.2-4 (compiled via fink, this is imosflm 1.0.0 with ipmosflm 7.0.5) OR: OS: Mac (intel) 10.5.8 imosflm: 1.0.3-1 (compiled via fink, it also uses ipmosflm 7.0.5) In the second case there is a warning: /sw/bin/imosflm: line 204: type: /sw/bin/wish8.5: not found Environment variable MOSFLM_WISH does not point to a valid wish8.4 executable! Testing default wish8.4 executable (/sw/bin/wish8.4). Running imosflm with default wish8.4 executable (/sw/bin/wish8.4). which does not prevent the program to otherwise run. All other functions (indexation, strategy, integration) work. Any ideas? Best regards, -- Miguel Architecture et Fonction des Macromolécules Biologiques (UMR6098) CNRS, Universités d'Aix-Marseille I II Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France Tel : +33(0) 491 82 55 93 Fax: +33(0) 491 26 67 20 e-mail: miguel.ortiz-lombar...@afmb.univ-mrs.fr Web: http://www.pangea.org/mol/spip.php?rubrique2 -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean.
Re: [ccp4bb] trouble with imosflm cell refinement
Le 30 sept. 09 à 17:27, Graeme Winter a écrit : Dear Miguel, You may find that replacing the ipmosflm binary with the one from Harry's web page may be more reliable - typically these sorts of things come down to gfortran or g77 being a little keen in optimization. http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ Cheers, Graeme Dear Greame, Indeed, the pre-built binary from Harry's page did the trick. Thanks! -- Miguel Architecture et Fonction des Macromolécules Biologiques (UMR6098) CNRS, Universités d'Aix-Marseille I II Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France Tel : +33(0) 491 82 55 93 Fax: +33(0) 491 26 67 20 e-mail: miguel.ortiz-lombar...@afmb.univ-mrs.fr Web: http://www.pangea.org/mol/spip.php?rubrique2 -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean.
