Re: [ccp4bb] Visualize symmetry operations
Hi Aaron may be this tool can be helpful https://symd.nci.nih.gov/ or in the pymol there is script https://pymolwiki.org/index.php/Symmetry_Axis Visualizing the transformation between two selections/objects https://pymolwiki.org/index.php/RotationAxis PDB has a symmetry browser http://www.rcsb.org/pdb/staticHelp.do?p=help/advancedsearch/proteinSymmetryBrowser.html may be it will be helpful best Jiri On Wed, Jan 4, 2017 at 5:20 PM, Aaron Finke wrote: > Dear CCP4-keteers, > > Is there a program that can visualize symmetry operation positions (e.g. > twofold screws, fourfolds) in protein structures, like CCDC Mercury does > for small molecules? > > Thanks in advance, > Aaron > > -- > Aaron Finke > Staff Scientist, MacCHESS > Cornell University > e-mail: af...@cornell.edu > >
Re: [ccp4bb] Visualize symmetry operations
Explore this: http://cci.lbl.gov/cctbx/ Pavel On Wed, Jan 4, 2017 at 8:20 AM, Aaron Finke wrote: > Dear CCP4-keteers, > > Is there a program that can visualize symmetry operation positions (e.g. > twofold screws, fourfolds) in protein structures, like CCDC Mercury does > for small molecules? > > Thanks in advance, > Aaron > > -- > Aaron Finke > Staff Scientist, MacCHESS > Cornell University > e-mail: af...@cornell.edu > >
Re: [ccp4bb] Visualize symmetry operations
Hi Aaron, I have a PyMOL plugin based on cctbx (i.e. it requires the installation of cctbx) that will do this. This allows one to make images like this: http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/pymol_symmetry.png The script is called draw_symops_cctbx.py and is available here: http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/ (this may site may already be listed in the repositories of the PyMOL plugin manager). Cheers, Rob On Wed, 2017-01-04 12:38 -0800, Pavel Afonine wrote: > Explore this: > > http://cci.lbl.gov/cctbx/ > > Pavel > > On Wed, Jan 4, 2017 at 8:20 AM, Aaron Finke wrote: > > > Dear CCP4-keteers, > > > > Is there a program that can visualize symmetry operation positions > > (e.g. twofold screws, fourfolds) in protein structures, like CCDC > > Mercury does for small molecules? > > > > Thanks in advance, > > Aaron > > > > -- > > Aaron Finke > > Staff Scientist, MacCHESS > > Cornell University > > e-mail: af...@cornell.edu > > > > -- Robert L. Campbell, Ph.D. Adjunct Assistant Professor Dept. of Biomedical & Molecular Sciences, Botterell Hall Rm 644 Queen's University, Kingston, ON K7L 3N6 Canada Tel: 613-533-6821 http://pldserver1.biochem.queensu.ca/~rlc