[cellml-discussion] ABI CellML team meeting minutes 2008-05-32

2008-05-22 Thread James Lawson

Dear all,

The ABI CellMl team meeting minutes are now up at:

http://www.cellml.org/meeting_minutes/abi-meeting-minutes-2008-05-21/?portal_status_message=Changes%20saved.

Kind regards,
James Lawson
begin:vcard
fn:James Lawson
n:Lawson;James
org:Auckland Bioengineering Institute;CellML Model Repository Curator, CellML Team
adr:;;University of AucklandNew Zealand
email;internet:[EMAIL PROTECTED]
title:James Lawson 
url:http://www.cellml.org
version:2.1
end:vcard

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Re: [cellml-discussion] ABI CellML team meeting minutes 2008-05-32

2008-05-22 Thread James Lawson
Apologies, that link should be 
http://www.cellml.org/meeting_minutes/abi-meeting-minutes-2008-05-21/


James

James Lawson wrote:

Dear all,

The ABI CellMl team meeting minutes are now up at:

http://www.cellml.org/meeting_minutes/abi-meeting-minutes-2008-05-21/?portal_status_message=Changes%20saved. 



Kind regards,
James Lawson
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begin:vcard
fn:James Lawson
n:Lawson;James
org:Auckland Bioengineering Institute;CellML Model Repository Curator, CellML Team
adr:;;University of AucklandNew Zealand
email;internet:[EMAIL PROTECTED]
title:James Lawson 
url:http://www.cellml.org
version:2.1
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Re: [cellml-discussion] ABI CellML team meeting minutes 2008-05-32

2008-05-22 Thread Peter Hunter

Hi James,

Excellent notes!
Frank Sachse's name is misspelt near the end.

Cheers,
Peter

James Lawson wrote:
Apologies, that link should be 
http://www.cellml.org/meeting_minutes/abi-meeting-minutes-2008-05-21/


James

James Lawson wrote:

Dear all,

The ABI CellMl team meeting minutes are now up at:

http://www.cellml.org/meeting_minutes/abi-meeting-minutes-2008-05-21/?portal_status_message=Changes%20saved. 



Kind regards,
James Lawson
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fn:Peter Hunter FRS
n:Hunter;Peter
org:University of Auckland;Auckland Bioengineering Institute (ABI)
adr:70 Symonds St;;Level 6;Auckland;;;New Zealand
email;internet:[EMAIL PROTECTED]
title:Director
tel;work:+649 373 7599 x88395
tel;fax:+649 367 7157
tel;home:+649 307 6662
tel;cell:+6421 505033
url:http://www.bioeng.auckland.ac.nz/
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[cellml-discussion] FW: Representing stochastic models in CellML

2008-05-22 Thread Mike Cooling
Just a note, for some reason you don't now need the SOCKs proxy from in the
ABI.

> -Original Message-
> From: [EMAIL PROTECTED]
> [mailto:[EMAIL PROTECTED] On Behalf Of Randall Britten
> Sent: Monday, 19 May 2008 4:59 p.m.
> To: 'CellML Discussion List'
> Cc: 'Kevin Burrage'
> Subject: Re: [cellml-discussion] Representing stochastic models in CellML
> 
> Hi
> 
> I'd prefer Skype at that time.  
> 
> I've found the Skype conference calls work fairly well, easiest if one
> person initiates the call, and all others make sure that the initiator
knows
> their skype-name, and that they want to be called to join in.  Also, Skype
> from within the ABI works well too, though you'll need IT to explain how
to
> use the SOCKS proxy, or to set it up for you if you have not done it
before.
> 
> Regards,
> Randall
> 
>> -Original Message-
>> From: [EMAIL PROTECTED] [mailto:cellml-discussion-
>> [EMAIL PROTECTED] On Behalf Of Andrew
>> Sent: Monday, 19 May 2008 4:17 p.m.
>> To: Kevin Burrage
>> Cc: cellml-discussion@cellml.org
>> Subject: Re: [cellml-discussion] Representing stochastic models in
>> CellML
>>
>> Kevin Burrage wrote:
>>> Andrew
>>>
>>> i am at conference early next week and then lectures and meetings
>>> wednesday and thursday - i am free friday 23 at say 8.30am - but how
>>> are we going to do it.  I am not sure that i can access the grid room
>>> - can skype work?
>>> BW
>> Hi Kevin,
>>
>> I am happy with 7:30 PM NZST (8:30 AM for you) on Friday the 23rd.
>>
>> I have got Skype working at home (and I have seen it working on the UoA
>> network for other people although not always); we could try running it
>> as a conference call and this might allow more people to participate
>> (but may also be more prone to not working).
>>
>> Perhaps the best thing would be for everyone who is interested, and
>> whether they would be happy with the time, and whether they would
>> rather
>> conference call in or (for people in Auckland) be in the same room at
>> the ABI.
>>
>> Best regards,
>> Andrew
>>
>>> Kevin
>>> -
>>> Kevin Burrage
>>> Professor of Computational Systems Biology, COMLAB, University of
>> Oxford
>>> and Professor of Computational Mathematics, IMB, University of
>> Queensland
>>> -
>>>
>>>
>>>
>>> On Wed, 14 May 2008 11:58:03 +1200
>>>  Andrew Miller <[EMAIL PROTECTED]> wrote:
>>>  Kevin Burrage wrote:
 Andrew

 I have lots of ideas on this - but email not a good way of doing it.
 Am in oxford at the moment but could skype you if you were
>> interested.
>>>  Hi Kevin,
>>>
>>>  Sorry for the delay in getting back to you about this.
>>>
>>>  There seems to be a lot of interest amongst members of
>>> the CellML community in Auckland about hearing your views
>>> on this; one suggestion I heard was to use the BestGRID
>>> rather than Skype so more people could be involved at this
>>> end (although I am not sure how convenient it would be for
>>> you to access the BestGRID facilities in Oxford so the
>>> timezones would work out).
>>>
>>>  When would be the most convenient for you? Given that
>>> there are a number of people who have indicated a desire
>>> to be involved in these discussion, and also a few that
>>> are interested in sitting in to listen, I would suggest
>>> making it at earliest next week, to ensure everyone can
>>> get their schedules to fit, and to ensure that software is
>>> working ahead of time. Since you are, I presume, in a
>>> GMT+1 timezone, and we are in GMT+12, the best time would
>>> probably be early in the morning for you / night time for
>>> us, e.g. 7-8 AM Oxford / 6-7 PM NZ, 8-9 AM Oxford / 7-8 PM
>>> NZ , or 9-10 AM Oxford / 8-9 PM NZ.
>>>
>>>  Best regards,
>>>  Andrew
>>>
 BW

 Kevin
 -
 Kevin Burrage
 Professor of Computational Systems Biology, COMLAB, University of
>> Oxford
 and Professor of Computational Mathematics, IMB, University of
 Queensland
 -



 On Wed, 23 Apr 2008 17:31:26 +1200
  Andrew Miller <[EMAIL PROTECTED]> wrote:
  Hi all,

  I have spent some time looking into how we might be able
 to represent stochastic models in CellML. This is
 something that would be useful to ensure we have properly
 contemplated for CellML 1.2. I have pasted in the notes I
 wrote on this below.

  Please let me know if you have any suggestions, comments,
 or criticisms of the below document. At some point, this
 will obviously need to be transformed into a more robust
 proposal, but for now, I just want to make sure we keep
 the option open to use the CellML 1.2 core to represent
 stochastic models.

  Best regards,
  Andrew

  -

  Overall goal:
   Describe a framework which can be used in CellML 1.2 to