Re: [CF-metadata] non-standard standard_names

2010-05-13 Thread Lowry, Roy K
Dear All,

The 'fast track' approach being discussed has promise and is pretty much in 
line with the ISO vocabulary model (in which terms have proposed, accepted, 
deprecated or deleted) used in resources like the GEMET thesaurus. However, 
there are important details to consider, such as version management (what event 
triggers the publication of a new version of the vocabulary?).

I am more uncomfortable with concept of community namespace Standard Name lists 
- I see this as the route to data ghettos (and don't truly believe that the 
Semantic Web would prevent this as nobody will bother doing the mappings)- and 
specialized standard names (in my view its either a Standard Name or it isn't 
and we have to accept that the nature of Standard Name is moving away from the 
purity of a geophysical phenomenon).

Cheers, Roy 

From: cf-metadata-boun...@cgd.ucar.edu [cf-metadata-boun...@cgd.ucar.edu] On 
Behalf Of Nan Galbraith [ngalbra...@whoi.edu]
Sent: 12 May 2010 20:35
To: cf-metadata@cgd.ucar.edu
Subject: Re: [CF-metadata] non-standard standard_names

The original proposal was to include names that have been rejected by
CF for being too specialized - these would be permanent parts of the
project vocabulary, not deprecated.

Many in situ instruments produce non-geophysical variables that fall
into this category; although this isn't what Martin had in mind,  his
proposal - or something along the same lines - would help us get to
a standard naming scheme for this kind of data too.

- Nan

 So my proposal was to create a vocabulary, or more precisely an RDF
 store, that lets us:
  1) declare a name that may be proposed as a CF candidate
  2) make a statement that the name has been (or even 'is being')
 submitted to CF for consideration
  3a) make a statement that the name has been accepted as a CF name,
 and therefore is deprecated as a proposed name
  3b) make a statement that the name has been rejected as a CF name,
 and therefore is deprecated as a proposed name
 In either 3a or 3b,
  4) make a statement that the replacement representation of the name
 is xyz in some other vocabulary




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* Nan Galbraith(508) 289-2444 *
* Upper Ocean Processes GroupMail Stop 29 *
* Woods Hole Oceanographic Institution*
* Woods Hole, MA 02543*
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[CF-metadata] standard name grammar for version 14 of the table

2010-05-13 Thread Jonathan Gregory
Dear all

Encouraged by comments on my standard name grammar, I have updated it for
version 14 of the standard name table, published yesterday. Doing the update
was an interesting exercise. Initially most of the new names could not be
parsed, but it was fairly straightforward to add new phrases to the lexicon
until the parsing succeeded. The new version is at
http://www.met.reading.ac.uk/~jonathan/CF_metadata/14.1/

You can imagine that proposals for standard names could be guided by such a
grammar, in which proposers would indicate how the lexicon and syntax should
be extended if required, as part of their proposal. If no such extensions are
needed, an automatic tool could help proposers construct standard names from
existing grammar, and you'd expect they would be acceptable once they'd passed
through a manual anti-green-dog filter.

In another email, I will comment on some specific issues with version 14.

Cheers

Jonathan
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[CF-metadata] proposed changes to various standard names

2010-05-13 Thread Jonathan Gregory
Dear all

In preparing the grammar for CF standard names for version 13 of the table,
I made proposals to modify various existing standard names. These proposals
apply to version 14 as well, and I repeat them below. In addition, version 14
raises some new issues. These are questions that I didn't think of when we
were working on the proposed standard names; adding new phrases to the lexicon
made them more obvious. I think that shows a benefit of having a lexicon.
(But maybe we did discuss them, and I've forgotten! If so, apologies.)

* We have introduced the phrase sinking_mole_flux. Could that be
downwelling_mole_flux instead? I think sinking and downwelling mean the
same thing, and downwelling was already in the lexicon.

* What's the difference between inorganic_phosphorus and inorganic_phosphate,
and likewise inorganic_silicon and inorganic_silicate?

* For elemental_nitrogen, could we say molecular_nitrogen, which would be
consistent with molecular_hydrogen and molecular_oxygen?

* What's the difference between sulfate_dry_aerosol and sulfur_dry_aerosol?

* What's the difference between large_scale and stratiform?

* We have an existing name of surface_carbon_dioxide_mole_flux, whose sign
convention is not clear. Could we change this to
surface_up|downward_mole_flux_of_carbon_dioxide
to be consistent with some newly introduced names?

Proposals already made (on version 13, still applicable to version 14):

snow_soot_content - soot_content_of_surface_snow
snow_thermal_energy_content - thermal_energy_content_of_surface_snow
snow_temperature - temperature_in_snow
liquid_water_content_of_snow_layer - liquid_water_content_of_surface_snow

snow can refer both to lying snow (a medium) and falling snow (a species).
Existing standard names generally use surface_snow for the former, but not
always. I propose these changes to remove the ambiguity.

water_vapor_pressure - water_vapor_partial_pressure

This quantity is really a partial pressure, and making this change is
consistent with the use of partial_pressure for carbon_dioxide in other
names.

dissipation_in_atmosphere_boundary_layer - 
kinetic_energy_dissipation_in_atmosphere_boundary_layer

This change is proposed because dissipation alone is vague, and it makes the
name consistent with other names that contain the phrase
kinetic_energy_dissipation referring to the ocean.

sea_ice_displacement - magnitude_of_sea_ice_displacement

This change is proposed so that sea_ice_displacement is definitely a vector,
with components e.g. eastward_sea_ice_displacement; at present, it is both a
scalar and a vector. 

Cheers

Jonathan
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Re: [CF-metadata] proposed changes to various standard names

2010-05-13 Thread John . Dunne
Hi Jonathan,

Here are some thoughts:

 * We have introduced the phrase sinking_mole_flux. Could that be
 downwelling_mole_flux instead? I think sinking and downwelling 
 mean the
 same thing, and downwelling was already in the lexicon.

The two definitions have different reference frames - Sinking is a
velocity relative to the fluid, while downwelling is a velocity of the
fluid itself.

 * What's the difference between inorganic_phosphorus and 
 inorganic_phosphate,and likewise inorganic_silicon and 
 inorganic_silicate?

phosphorus and silicon is more general, but I think they are intended to
mean the same things in each case.

 * For elemental_nitrogen, could we say molecular_nitrogen, which 
 would be
 consistent with molecular_hydrogen and molecular_oxygen?

molecular nitrogen is only appropriate for N2 gas, like for H2 and O2,
distinct from nitrogen in other forms.

 * We have an existing name of surface_carbon_dioxide_mole_flux, 
 whose sign
 convention is not clear. Could we change this to
 surface_up|downward_mole_flux_of_carbon_dioxide
 to be consistent with some newly introduced names?

This flux was previously aggreed to be positive up from the atmospheric
folks wanting consistency between the land and ocean estimates, but for
an ocean output alone, seems like there would be more flexibility.

Cheers, John

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Re: [CF-metadata] proposed changes to various standard names

2010-05-13 Thread Jonathan Gregory
Dear Jonathan

  downwelling_mole_flux instead? I think sinking and downwelling 
  mean the same thing, and downwelling was already in the lexicon.
 
 The two definitions have different reference frames - Sinking is a
 velocity relative to the fluid, while downwelling is a velocity of the
 fluid itself.

Fine. That is a clear distinction.

  * What's the difference between inorganic_phosphorus and 
  inorganic_phosphate,and likewise inorganic_silicon and 
  inorganic_silicate?
 
 phosphorus and silicon is more general, but I think they are intended to
 mean the same things in each case.

In that case, I think we should change inorganic phosphate and silicate (one
occurrence of each) to inorganic phosphorus and silicon (two occurrences of
each) in the newly added names. 

  * For elemental_nitrogen, could we say molecular_nitrogen, which 
  would be consistent with molecular_hydrogen and molecular_oxygen?
 
 molecular nitrogen is only appropriate for N2 gas, like for H2 and O2,
 distinct from nitrogen in other forms.

We say dissolved_molecular_oxygen_in_sea_water in some other standard names.
Could we do the same for nitrogen?

  * We have an existing name of surface_carbon_dioxide_mole_flux, 
  whose sign
  convention is not clear. Could we change this to
  surface_up|downward_mole_flux_of_carbon_dioxide
  to be consistent with some newly introduced names?
 
 This flux was previously aggreed to be positive up from the atmospheric
 folks wanting consistency between the land and ocean estimates, but for
 an ocean output alone, seems like there would be more flexibility.

Yes, one could define it either way, and it would be fine to have standard
names for both up and down. Which one to choose is an issue for the users of
the standard, not the standard itself. If the existing ambiguous name is
likely to mean up, I suggest we make it an alias for
surface_upward_mole_flux_of_carbon_dioxide

Thanks for your advice and best wishes

Jonathan
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