Re: [CF-metadata] CMIP5 carbon cycle standard names

2010-09-29 Thread Pierre Friedlingstein
on the face of it they
   

appear
 

to be alternative way of expressing the same quantity.

I presume that there is a principle that, where possible, names
   

should
be constructed according to a consistent pattern (especially in the
light of>  Jonathan's work on rules for formulating names), so my
 

guess
   

is that there are some reasons for the above differences but I am not
sure
 

what they are.   As you've probably guessed, my interest in this
   

relates
 

to my own work on developing a grammar for standard names, and it is
   

clearly desirable to reduce the number of grammar rules to a minimum.

I agree that wherever possible we should stick to using a small set of
grammar rules.  However, there are occasions where being too rigid
about
the syntax can result in immensely long and unwieldy (and therefore
difficult to understand) names.  Often it is just a question of
readability.

I think we could call the second quantity

 

surface_upward_mass_flux_of_carbon[_due_to_emission_from_natural_source
   

s
]
to make it more consistent with the first without any loss of
readability.  Does anyone object to this change?

Looking at the third name and trying to squeeze it into the same
pattern
would give something like:

 

surface_upward_carbon_mass_flux_due_to_emission_from_plant_respiration_
   

f
or_biomass_growth
which I think is less readable, so I prefer the syntax without the
'emission'.  Do others agree?
(Incidentally, this would also affect another related name:

 

surface_upward_carbon_mass_flux_due_to_plant_respiration_for_biomass_ma
   

i
ntenance).

Robert's email has caused me to re-read the names more carefully and I
realise that I have neglected to make clear that many of the carbon
fluxes are in fact mass fluxes (as opposed to mole fluxes, for
example).
I would like to slightly revise some of the names already accepted to
include the word 'mass':


 

surface_upward_mass_flux_of_carbon_dioxide_expressed_as_carbon_due_to_e
   

m
ission_from_fires_excluding_land_use_change; kg m-2 s-1

 

surface_upward_mass_flux_of_carbon_dioxide_expressed_as_carbon_due_to_e
   

m
ission_from_grazing; kg m-2 s-1

 

surface_upward_mass_flux_of_carbon_dioxide_expressed_as_carbon_due_to_e
   

m
ission_from_crop_harvesting; kg m-2 s-1

 

surface_net_upward_mass_flux_of_carbon_dioxide_expressed_as_carbon_due_
   

t
o_emission_from_anthropogenic_land_use_change; kg m-2 s-1

 

surface_net_downward_mass_flux_of_carbon_dioxide_expressed_as_carbon_du
   

e

 

_to_photosynthesis_and_respiration_and_fires_including_land_use_change;
   

kg m-2 s-1
carbon_mass_flux_into_soil_from_litter; kg m-2 s-1
carbon_mass_flux_into_soil_from_vegetation_excluding_litter; kg m-2
 

s-1
   
 

surface_upward_carbon_mass_flux_due_to_plant_respiration_for_biomass_gr
   

o
wth; kg m-2 s-1

 

surface_upward_carbon_mass_flux_due_to_plant_respiration_for_biomass_ma
   

i
ntenance; kg m-2 s-1

 

surface_net_downward_mass_flux_of_carbon_dioxide_expressed_as_carbon_du
   

e

 

_to_photosynthesis_and_respiration_and_fires_excluding_land_use_change;
   

kg m-2 s-1.

Best wishes,
Alison

--
Alison Pamment  Tel: +44 1235 778065
NCAS/British Atmospheric Data CentreFax: +44 1235 446314
Rutherford Appleton Laboratory  Email:
alison.pamm...@stfc.ac.uk
Chilton, Didcot, OX11 0QX, U.K.


 

-Original Message-
From: Cameron-smith, Philip [mailto:cameronsmi...@llnl.gov]
Sent: 23 September 2010 19:48
To: Pierre Friedlingstein; Pamment, Alison (STFC,RAL,SSTD)
Cc: cf-metadata@cgd.ucar.edu
Subject: RE: [CF-metadata] CMIP5 carbon cycle standard names

Hi Pierre,

Sorry for causing confusion.

I understood that the question was whether to introduce the
   

following
   

two standard names (for your purpose)


   
 

tendency_of_atmosphere_mass_content_of_carbon_dioxide_expressed_as_carb
   

on_due_to_anthropogenic_emission; kg m-2 s-1

   
 

tendency_of_atmosphere_mass_content_of_carbon_dioxide_expressed_as_carb
   

on_due_to_emission_from_fossil_fuel_combustion; kg m-2 s-1

Or these two,


   
 

surface_upward_mass_flux_of_carbon_dioxide_expressed_as_carbon_due_to_a
   

nthropogenic_emission; kg m-2 s-1

   
 

surface_upward_mass_flux_of_carbon_dioxide_expressed_as_carbon_due_to_e
   

mission_from_fossil_fuel_combustion; kg m-2 s-1.

Alison had originally proposed the former (tendency_), and you
   

(Pierre)
 

argued for the latter (surface_).

What I liked was Alison's description of why these tendency_ and
surface_ quantities are physically different because the tendency_
quantity also includes non-surface emissions.

My first point was that your application included aircraft emissions
   

so
 

that the tendency_ quantity is the correct physical quantity for
   

your
   

applicati

Re: [CF-metadata] CMIP5 carbon cycle standard names

2010-09-23 Thread Pierre Friedlingstein

Hi all,
I'm getting confused now.
I understood Alison last proposal as keeping only one name :

surface_upward_mass_flux_of_carbon_dioxide_expressed_as_carbon_due_to_anthropogenic_emission;
 kg m-2 s-1
surface_upward_mass_flux_of_carbon_dioxide_expressed_as_carbon_due_to_emission_from_fossil_fuel_combustion;
 kg m-2 s-1.

 Philip's mail, seemed to imply that both names could be used as he 
liked Alison's distinction...


Could you clarify what the final decision?

For info, yes the data do include aircraft, chimneys,... emissions as 
these data are derived from country based reporting of fossil fuel trades.
Hence the aircraft emissions from US carriers are in the US numbers and 
hence assigned on the US territory.  This might be OK for US as most of 
the flight are domestic, but I'm sure this is 99.9 % wrong for Belgium ;-).
Saying emissions are a vertical integral here would imply that planes 
are only flying up and down !


Anyway, I will leave with either or definition (you'll just have to 
explain what the "tendency" one mean to non-chemists...)


Best
Pierre



On 22/09/2010 17:28, Cameron-smith, Philip wrote:

Hi All,

Even if the dataset doesn't have vertical information, if it includes aircraft 
emissions then the physical quantity it is quantifying is the vertical integral 
rather than the surface emission.  In which case I would favour 
tendency_of_atmosphere_mass_content_

If there are no aircraft in the data, then do smoke stacks produce 'surface 
emissions'?  An interesting question that could be debated.  Hence, another 
advantage of tendency_of_atmosphere_mass_content_ is that it makes the question 
moot.

BTW, FWIW, I note that the closest related standard name already in the table 
specifies the downward direction 
(surface_downward_mass_flux_of_carbon_dioxide_expressed_as_carbon).

On a different note, I like Alison's distinction between

tendency_of_atmosphere_mass_content_of_..._due_to_anthropogenic_emission

and

surface_upward_mass_flux_of_..._due_to_anthropogenic_emission

Perhaps we should cross-reference such standard names in their descriptions to 
help future users?

Best wishes,

  Philip


Dr Philip Cameron-Smith,  p...@llnl.gov,  Lawrence Livermore Nat. Lab.



   

-Original Message-
From: cf-metadata-boun...@cgd.ucar.edu [mailto:cf-metadata-
boun...@cgd.ucar.edu] On Behalf Of Pierre Friedlingstein
Sent: Wednesday, September 22, 2010 6:01 AM
To: alison.pamm...@stfc.ac.uk
Cc: cf-metadata@cgd.ucar.edu
Subject: Re: [CF-metadata] CMIP5 carbon cycle standard names

Alison,
I see your point.
As far as I know the anthropogenic emissions data will be surface
fluxes. Data are based on country level consumption of fossil fuel,
they don't have the info on where in the air it is released...
Pierre

 On 22/09/2010 13:04, alison.pamm...@stfc.ac.uk wrote:
 

Hi Pierre,

My thinking here was that 'anthropegenic emissions' (which presumably
include fossil fuel emissions) and 'fossil fuel' emissions themselves
do not necessarily always occur at the earth's surface.  For example,
emissions from tall chimneys and aircraft may occur at many levels in
the atmosphere.  It was not clear to me that these particular
quantities in the CMIP5 tables are intended only to account for
   

surface emissions.
 

If that is the case, then we certainly need to make it clear and I
agree with your suggestion to label them as surface fluxes. So
   

instead
 

of introducing


   

tendency_of_atmosphere_mass_content_of_carbon_dioxide_expressed_as_car
 

bo n_due_to_anthropogenic_emission; kg m-2 s-1

   

tendency_of_atmosphere_mass_content_of_carbon_dioxide_expressed_as_car
 

bo n_due_to_emission_from_fossil_fuel_combustion; kg m-2 s-1

I will add

   

surface_upward_mass_flux_of_carbon_dioxide_expressed_as_carbon_due_to_
 

an
thropogenic_emission; kg m-2 s-1

   

surface_upward_mass_flux_of_carbon_dioxide_expressed_as_carbon_due_to_
 

em ission_from_fossil_fuel_combustion; kg m-2 s-1.

OK?

Best wishes,
Alison

--
Alison Pamment  Tel: +44 1235 778065
NCAS/British Atmospheric Data CentreFax: +44 1235 446314
Rutherford Appleton Laboratory  Email:
   

alison.pamm...@stfc.ac.uk
 

Chilton, Didcot, OX11 0QX, U.K.



   

-Original Message-
From: Pierre Friedlingstein [mailto:p.friedlingst...@exeter.ac.uk]
Sent: 21 September 2010 16:41
To: Pamment, Alison (STFC,RAL,SSTD)
Cc: j.m.greg...@reading.ac.uk; cf-metadata@cgd.ucar.edu
Subject: Re: [CF-metadata] CMIP5 carbon cycle standard names

Hi Alison,
Just wondering, why are the first two variables below named as
"tendency_of_atmosphere_mass_content_of..."
while all others are named as  "surfac

Re: [CF-metadata] CMIP5 carbon cycle standard names

2010-09-22 Thread Pierre Friedlingstein

Alison,
I see your point.
As far as I know the anthropogenic emissions data will be surface 
fluxes. Data are based on country level consumption of fossil fuel,  
they don't have the info on where in the air it is released...

Pierre

   On 22/09/2010 13:04, alison.pamm...@stfc.ac.uk wrote:

Hi Pierre,

My thinking here was that 'anthropegenic emissions' (which presumably
include fossil fuel emissions) and 'fossil fuel' emissions themselves do
not necessarily always occur at the earth's surface.  For example,
emissions from tall chimneys and aircraft may occur at many levels in
the atmosphere.  It was not clear to me that these particular quantities
in the CMIP5 tables are intended only to account for surface emissions.
If that is the case, then we certainly need to make it clear and I agree
with your suggestion to label them as surface fluxes. So instead of
introducing

tendency_of_atmosphere_mass_content_of_carbon_dioxide_expressed_as_carbo
n_due_to_anthropogenic_emission; kg m-2 s-1
tendency_of_atmosphere_mass_content_of_carbon_dioxide_expressed_as_carbo
n_due_to_emission_from_fossil_fuel_combustion; kg m-2 s-1

I will add
surface_upward_mass_flux_of_carbon_dioxide_expressed_as_carbon_due_to_an
thropogenic_emission; kg m-2 s-1
surface_upward_mass_flux_of_carbon_dioxide_expressed_as_carbon_due_to_em
ission_from_fossil_fuel_combustion; kg m-2 s-1.

OK?

Best wishes,
Alison

--
Alison Pamment  Tel: +44 1235 778065
NCAS/British Atmospheric Data CentreFax: +44 1235 446314
Rutherford Appleton Laboratory  Email: alison.pamm...@stfc.ac.uk
Chilton, Didcot, OX11 0QX, U.K.


   

-----Original Message-----
From: Pierre Friedlingstein [mailto:p.friedlingst...@exeter.ac.uk]
Sent: 21 September 2010 16:41
To: Pamment, Alison (STFC,RAL,SSTD)
Cc: j.m.greg...@reading.ac.uk; cf-metadata@cgd.ucar.edu
Subject: Re: [CF-metadata] CMIP5 carbon cycle standard names

Hi Alison,
Just wondering, why are the first two variables below named as
"tendency_of_atmosphere_mass_content_of..."
while all others are named as  "surface_upward_mass_flux_of_ ..."
Any reason ?
I know the "tendency..." is used for other chemical species... But
 

here
   

for CO2 variables, I think intra-consistency should be favoured. No ?

Best
Pierre

On 21/09/2010 13:40, alison.pamm...@stfc.ac.uk wrote:
 

Dear Jonathan and Pierre,

Thank you both for your comments on the CMIP5 carbon cycle names.
Looking back through this thread I think we have resolved all the
outstanding issues and so the following names are now accepted for
inclusion in the standard name table:


   

tendency_of_atmosphere_mass_content_of_carbon_dioxide_expressed_as_car
 

bo n_due_to_anthropogenic_emission; kg m-2 s-1

   

tendency_of_atmosphere_mass_content_of_carbon_dioxide_expressed_as_car
 

bo n_due_to_emission_from_fossil_fuel_combustion; kg m-2 s-1
surface_upward_mass_flux_of_carbon_due_to_natural_emission; kg m-
   

2
 

s-1
atmosphere_mass_of_carbon_dioxide; kg
carbon_content_of_products_of_land_use_change; kg m-2

   

surface_upward_flux_of_carbon_dioxide_expressed_as_carbon_due_to_emiss
 

io n_from_fires_excluding_land_use_change; kg m-2 s-1

   

surface_upward_flux_of_carbon_dioxide_expressed_as_carbon_due_to_emiss
 

io
n_from_grazing; kg m-2 s-1

   

surface_upward_flux_of_carbon_dioxide_expressed_as_carbon_due_to_emiss
 

io
n_from_crop_harvesting; kg m-2 s-1

   

surface_net_upward_flux_of_carbon_dioxide_expressed_as_carbon_due_to_e
 

mi ssion_from_anthropogenic_land_use_change; kg m-2 s-1

   

surface_net_downward_flux_of_carbon_dioxide_expressed_as_carbon_due_to
 

_p
   

hotosynthesis_and_respiration_and_fires_including_land_use_change;
   

kg
m-2 s-1
carbon_flux_into_soil_from_litter; kg m-2 s-1
carbon_flux_into_soil_from_vegetation_excluding_litter; kg m-2 s-1
leaf_carbon_content; kg m-2 wood_carbon_content; kg m-2
root_carbon_content; kg m-2
carbon_content_of_miscellaneous_living_matter; kg m-2 (N.B.
'miscellaneous' means carbon content of living matter apart from
   

those
 

individually named in the preceding three items)
wood_debris_carbon_content; kg m-2 surface_litter_carbon_content; kg
m-2 subsurface_litter_carbon_content; kg m-2
fast_soil_pool_carbon_content; kg m-2
   

medium_soil_pool_carbon_content;
 

kg m-2 slow_soil_pool_carbon_content; kg m-2

   

surface_upward_carbon_flux_due_to_plant_respiration_for_biomass_growth
 

;
kg m-2 s-1

   

surface_upward_carbon_flux_due_to_plant_respiration_for_biomass_mainte
 

na
nce; kg m-2 s-1
net_primary_productivity_of_carbon_accumulated_in_leaves; kg m-2 s-1
net_primary_productivity_of_carbon_accumulated_in_wood; kg m-2 s-1
net_primary_productivity_of_carbon_accumulated_in_roots; kg m-2 s-1

   

surface_ne

Re: [CF-metadata] CMIP5 carbon cycle standard names

2010-09-21 Thread Pierre Friedlingstein

Hi Alison,
Just wondering, why are the first two variables below named as
"tendency_of_atmosphere_mass_content_of..."
while all others are named as  "surface_upward_mass_flux_of_ ..."
Any reason ?
I know the "tendency..." is used for other chemical species... But here 
for CO2 variables, I think intra-consistency should

be favoured. No ?

Best
Pierre

On 21/09/2010 13:40, alison.pamm...@stfc.ac.uk wrote:

Dear Jonathan and Pierre,

Thank you both for your comments on the CMIP5 carbon cycle names.
Looking back through this thread I think we have resolved all the
outstanding issues and so the following names are now accepted for
inclusion in the standard name table:

tendency_of_atmosphere_mass_content_of_carbon_dioxide_expressed_as_carbo
n_due_to_anthropogenic_emission; kg m-2 s-1
tendency_of_atmosphere_mass_content_of_carbon_dioxide_expressed_as_carbo
n_due_to_emission_from_fossil_fuel_combustion; kg m-2 s-1
surface_upward_mass_flux_of_carbon_due_to_natural_emission; kg m-2
s-1
atmosphere_mass_of_carbon_dioxide; kg
carbon_content_of_products_of_land_use_change; kg m-2
surface_upward_flux_of_carbon_dioxide_expressed_as_carbon_due_to_emissio
n_from_fires_excluding_land_use_change; kg m-2 s-1
surface_upward_flux_of_carbon_dioxide_expressed_as_carbon_due_to_emissio
n_from_grazing; kg m-2 s-1
surface_upward_flux_of_carbon_dioxide_expressed_as_carbon_due_to_emissio
n_from_crop_harvesting; kg m-2 s-1
surface_net_upward_flux_of_carbon_dioxide_expressed_as_carbon_due_to_emi
ssion_from_anthropogenic_land_use_change; kg m-2 s-1
surface_net_downward_flux_of_carbon_dioxide_expressed_as_carbon_due_to_p
hotosynthesis_and_respiration_and_fires_including_land_use_change; kg
m-2 s-1
carbon_flux_into_soil_from_litter; kg m-2 s-1
carbon_flux_into_soil_from_vegetation_excluding_litter; kg m-2 s-1
leaf_carbon_content; kg m-2
wood_carbon_content; kg m-2
root_carbon_content; kg m-2
carbon_content_of_miscellaneous_living_matter; kg m-2 (N.B.
'miscellaneous' means carbon content of living matter apart from those
individually named in the preceding three items)
wood_debris_carbon_content; kg m-2
surface_litter_carbon_content; kg m-2
subsurface_litter_carbon_content; kg m-2
fast_soil_pool_carbon_content; kg m-2
medium_soil_pool_carbon_content; kg m-2
slow_soil_pool_carbon_content; kg m-2
surface_upward_carbon_flux_due_to_plant_respiration_for_biomass_growth;
kg m-2 s-1
surface_upward_carbon_flux_due_to_plant_respiration_for_biomass_maintena
nce; kg m-2 s-1
net_primary_productivity_of_carbon_accumulated_in_leaves; kg m-2 s-1
net_primary_productivity_of_carbon_accumulated_in_wood; kg m-2 s-1
net_primary_productivity_of_carbon_accumulated_in_roots; kg m-2 s-1
surface_net_downward_flux_of_carbon_dioxide_expressed_as_carbon_due_to_p
hotosynthesis_and_respiration_and_fires_excluding_land_use_change; kg
m-2 s-1.

To cope with the various fractional vegetation coverage quantities we
will use the existing standard name area_fraction and introduce new
entries of primary_evergreen_trees, secondary_deciduous_trees,
secondary_evergreen_trees, C3_plant_functional_types,
C4_plant_functional_types into the area_type table.

Best wishes,
Alison

--
Alison Pamment  Tel: +44 1235 778065
NCAS/British Atmospheric Data CentreFax: +44 1235 446314
Rutherford Appleton Laboratory  Email: alison.pamm...@stfc.ac.uk
Chilton, Didcot, OX11 0QX, U.K.

   


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Re: [CF-metadata] CMIP5 carbon cycle standard names

2010-09-17 Thread Pierre Friedlingstein

Again, OK for me.

On 17/09/2010 13:26, Jonathan Gregory wrote:

Sorry, one other one which Pierre didn't remark on. This name is rather
obscure, even bizarre :-)
   miscellaneous_living_compartments_carbon_content
I wonder if we could convey this meaning any more plainly? What about
   carbon_content_of_miscellaneous_living_matter
?

Jonathan
   


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Re: [CF-metadata] CMIP5 carbon cycle standard names

2010-09-17 Thread Pierre Friedlingstein

Fine for me!
Cheers
Pierre

On 17/09/2010 13:20, Jonathan Gregory wrote:

Dear Alison and Pierre

I have one late comment on these C-cycle names, about this one:

   

1) products_of_land_use_change_carbon_content
 

 From the discussion I understand what it means and it is well-defined. However
as an English phrase I found it opaque. Although not quite systematic, would
it be OK to turn it round, making it
carbon_content_of_products_of_land_use_change
There are other instances where we have alternative syntaxes X_Y and Y_of_X,
depending on how long X is! The difficulty with understanding the above phrase
is that it is unclear how much of it "products_of" applies to.

Best wishes

Jonathan
   


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