If your application is NSPersistentDocument-based, the document file *is* the persistent store. If you application isn't document-based, your application delegate probably contains a method that specifies the path to the persistent store. (In the Xcode Core Data application template, the boilerplate code puts it in a folder inside the Application Support folder.)
Thanks. I found the persistent store and deleted it. That of course removed the error message. Now I can continue developing my app.
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