Library Issues

2011-02-23 Thread Adarsh Sharma

Dear all,

I am confused about the concepts used while running map-reduce jobs in 
Hadoop Cluster.
I attached a program that is used to run in Hadoop Cluster. Please find 
the attachment.


I used to run this program successfully through below command in 
/home/hadoop/project/hadoop-0.20.2 directory of both master & slave node:


[hadoop@cuda1 hadoop-0.20.2]$ javac EnumDevices.java
[hadoop@cuda1 hadoop-0.20.2]$ java EnumDevices
Total number of devices: 1
Name: Tesla C1060
Version: 1.3
Clock rate: 1296000 MHz
Threads per block: 512

but when I used the same code ( jcuda libraries in map-reduce job ) , i 
result in the below errors :



[hadoop@ws37-mah-lin hadoop-0.20.2]$ bin/hadoop jar wordcount1.jar 
org.myorg.WordCount /user/hadoop/gutenberg /user/hadoop/output1
11/02/22 09:59:21 INFO input.FileInputFormat: Total input paths to 
process : 3

11/02/22 09:59:22 INFO mapred.JobClient: Running job: job_201102220937_0001
11/02/22 09:59:23 INFO mapred.JobClient:  map 0% reduce 0%
11/02/22 09:59:33 INFO mapred.JobClient: Task Id : 
attempt_201102220937_0001_m_00_0, Status : FAILED


11/02/22 09:59:33 INFO mapred.JobClient: Task Id : 
attempt_201102220937_0001_m_01_0, Status : FAILED

java.lang.RuntimeException: java.lang.reflect.InvocationTargetException
   at 
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:115)

   at org.apache.hadoop.mapred.MapTask.runNewMapper(MapTask.java:569)
   at org.apache.hadoop.mapred.MapTask.run(MapTask.java:305)
   at org.apache.hadoop.mapred.Child.main(Child.java:170)
Caused by: java.lang.reflect.InvocationTargetException
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native 
Method)
   at 
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at 
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)

   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at 
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:113)

   ... 3 more
*Caused by: java.lang.UnsatisfiedLinkError: no jcuda in java.library.path*
   at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1734)
   at java.lang.Runtime.loadLibrary0(Runtime.java:823)
   at java.lang.System.loadLibrary(System.java:1028)
   at jcuda.driver.CUDADriver.(CUDADriver.java:909)
   at jcuda.CUDA.init(CUDA.java:62)
   at jcuda.CUDA.(CUDA.java:42)
   at org.myorg.WordCount$TokenizerMapper.(WordCount.java:28)
   ... 8 more

11/02/22 09:59:42 INFO mapred.JobClient: Task Id : 
attempt_201102220937_0001_m_01_1, Status : FAILED

java.lang.RuntimeException: java.lang.reflect.InvocationTargetException
   at 
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:115)

   at org.apache.hadoop.mapred.MapTask.runNewMapper(MapTask.java:569)
   at org.apache.hadoop.mapred.MapTask.run(MapTask.java:305)
   at org.apache.hadoop.mapred.Child.main(Child.java:170)
Caused by: java.lang.reflect.InvocationTargetException
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native 
Method)
   at 
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at 
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)

   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at 
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:113)

   ... 3 more
*Caused by: java.lang.UnsatisfiedLinkError: no jcuda in java.library.path*
   at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1709)
   at java.lang.Runtime.loadLibrary0(Runtime.java:823)
   at java.lang.System.loadLibrary(System.java:1028)
   at jcuda.driver.CUDADriver.(CUDADriver.java:909)
   at jcuda.CUDA.init(CUDA.java:62)
   at jcuda.CUDA.(CUDA.java:42)
   at org.myorg.WordCount$TokenizerMapper.(WordCount.java:28)
   ... 8 more

11/02/22 09:59:42 INFO mapred.JobClient: Task Id : 
attempt_201102220937_0001_m_00_1, Status : FAILED

java.lang.RuntimeException: java.lang.reflect.InvocationTargetException
   at 
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:115)

   at org.apache.hadoop.mapred.MapTask.runNewMapper(MapTask.java:569)
   at org.apache.hadoop.mapred.MapTask.run(MapTask.java:305)
   at org.apache.hadoop.mapred.Child.main(Child.java:170)
Caused by: java.lang.reflect.InvocationTargetException
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native 
Method)
   at 
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at 
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)

   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at 
org.apache.hadoop.util.ReflectionUti

Re: Library Issues

2011-02-23 Thread Harsh J
Hey,

On Thu, Feb 24, 2011 at 10:13 AM, Adarsh Sharma
 wrote:
> Dear all,
>
> I am confused about the concepts used while running map-reduce jobs in
> Hadoop Cluster.
> I attached a program that is used to run in Hadoop Cluster. Please find the
> attachment.
> My PATH Variable shows that it includes all libraries as
>
> [hadoop@cuda1 ~]$ echo $PATH
> /usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/home/hadoop/project/hadoop-0.20.2/jcuda.jar:/usr/local/cuda/lib:/home/hadoop/bin
> [hadoop@cuda1 ~]$

AFAIK, on Linux, java.library.path is loaded from LD_LIBRARY_PATH and
on Windows it is PATH.
Also, build/lib/native or lib/native folders are added if available to
Hadoop's java.library.path if launched using the bin scripts. You can
place your native libraries there (under the proper Java platform).

-- 
Harsh J
www.harshj.com