[COOT] Coot 0.5.2 released
We are pleased to announce the release of Coot-0.5.2. This is mostly a bug-fix release (of 0.5/0.5.1) but a few new features sneaked in too. source: http://www.ysbl.york.ac.uk/~emsley/software/coot-0.5.2.tar.gz binaries: http://www.ysbl.york.ac.uk/~emsley/software/binaries/stable/ Thanks, Paul Bernhard Kevin -- o FEATURE: A "Delete Molecule" button is now available in the Display Manager [TJS]. o FEATURE: show-rotamer-dialog is now available from the scripting layer (hence `quick rotamer' keybinding) [FvD]. o FEATURE: Manual definition of NCS ghost matrices - GUI added. o FEATURE: overlay-my-ligands function introduced - GUI added. o FEATURE: A simple interface to electrostatic surfaces has been introduced (Extensions -> Representations). o FEATURE: rotate-chi feature introduced. For use with a PowerMate. o FEATURE: keyboard-based Go To Residue for quicker navigation. o CHANGE: NCS ghost work using LSQ to get the matrix, not SSM. o CHANGE: Display manager toggle buttons replaced with check buttons. o CHANGE: make-dynamically-transformed-ncs-maps takes an extra argument specifying if new maps should overwrite previous maps of the same name. o CHANGE: Extensions menu re-worked. o CHANGE: Keyboard zooming is now smoothed. o BUG-FIX: the chi angle bond highlighting works again. o BUG-FIX: The Cancel button in Save Restraints now works. o BUG-FIX: Check/Delete waters in Check mode no longer causes a crash when the "Close" button is clicked. o BUG-FIX: Atom elements are inferred from the atom name. o BUG-FIX: writing of cifs from the Restraints editor has been improved [JED]. o BUG-FIX: chiral restraints specified as "BOTH" can now be edited. o BUG-FIX: "Flip peptide" now flips the peptide H atom too [Joel Bard]. o BUG-FIX: Ligands can now have their torsions manipulated in CA+Ligands mode [Ingo Korndoerfer]. o BUG-FIX: NCS residue range edits now apply to more than the first peer. o BUG-FIX: Coot now can read PART cards with a site occupancy factor from a SHELXL .res file [Mirek Gilski]. o BUG-FIX: Fixed crash on using multiple geometry (Distance and Angles) dialogs. o BUG-FIX: The Reset View button has been reworked. o BUG-FIX: Ball & Stick additional representations has been reworked and now move as the molecule gets updated. o BUG-FIX: Ramachandran improvement function has been improved. o BUG-FIX: Rotamers and simple refinement now work with residues with insertion codes. o BUG-FIX: The rotamer graph no longer rescales on updating a molecule.
Re: [COOT] coot for 10.4 and 10.5 intel
The only difference should be the version of coot. On Dec 15, 2008, at 10:23 AM, Nathaniel Echols wrote: Hey Bill, this has the correct and complete Python module search paths too (although /usr/local/xtal/coot/share/coot/python is repeated four times, but this doesn't appear to break anything). What's the difference between this and the coot-0.5-pre1 build you sent out on Thursday? thanks, Nat (still no coot_python, but I'm pretty sure that's a different problem.) On Fri, Dec 12, 2008 at 9:40 PM, William Scott wrote: Is this one any better? http://sage.ucsc.edu/~wgscott/xtal/wiki/index.php/Coot-0.5.1-pre1_revision_1661_for_intel-10.4-10.5 On Fri, December 12, 2008 2:53 am, Valerie Biou wrote: Hi Bill, I installed it this morning and it starts ok. all I tried is SSM, it still crashes. Do you want me to test other things? all the best Valerie William G. Scott Contact info: http://chemistry.ucsc.edu/~wgscott/
Re: [COOT] coot for 10.4 and 10.5 intel
Hey Bill, this has the correct and complete Python module search paths too (although /usr/local/xtal/coot/share/coot/python is repeated four times, but this doesn't appear to break anything). What's the difference between this and the coot-0.5-pre1 build you sent out on Thursday? thanks, Nat (still no coot_python, but I'm pretty sure that's a different problem.) On Fri, Dec 12, 2008 at 9:40 PM, William Scott wrote: > Is this one any better? > > > http://sage.ucsc.edu/~wgscott/xtal/wiki/index.php/Coot-0.5.1-pre1_revision_1661_for_intel-10.4-10.5 > > > > On Fri, December 12, 2008 2:53 am, Valerie Biou wrote: > > Hi Bill, > > > > I installed it this morning and it starts ok. all I tried is SSM, it > still > > crashes. Do you want me to test other things? > > all the best > > > > Valerie > > > > > > > > William G. Scott > > Contact info: > http://chemistry.ucsc.edu/~wgscott/ >
