Re: [COOT] Novel maps...

2009-06-23 Thread Maia Cherney

Hi all, Is it possible to change residue or atom occupancies in coot?

Maia


Re: [COOT] Novel maps...

2009-06-23 Thread Paul Emsley


Maia Cherney wrote:

Hi all, Is it possible to change residue or atom occupancies in coot?

Maia



Yes.


http://www.ysbl.york.ac.uk/~emsley/coot/doc/chapters/user-manual_5.html#SEC147


[COOT] Alternate chains

2009-06-23 Thread SIPPEL,KATHERINE H

Hi all,

I have a high resolution structure and some of the loops have dual 
conformations.  Is there a way to build strings of alternate 
conformation residues all at once rather than building individual 
alternate conformation residues or deleting the old loop, building 
the new loop and then manually putting the pdb files together?


It would be extra awesome if there was a build alternate chain 
button where you can click a range of residues.  Instead of 
offering optional rotamers it could go into real space refine 
allowing you to jiggle into the difference map.  Just an idea.


Thanks in advance,

Katherine Sippel

--
SIPPEL,KATHERINE H
Ph. D. candidate
McKenna Lab
Department of Biochemistry and Molecular Biology
College of Medicine
University of Florida


Re: [COOT] Novel maps...

2009-06-23 Thread chern

Dear all,

Thank you  for your help with occupancies.

Maia


- Original Message - 
From: Paul Emsley paul.ems...@bioch.ox.ac.uk

To: COOT@JISCMAIL.AC.UK
Sent: Tuesday, June 23, 2009 9:38 AM
Subject: Re: Novel maps...





Maia Cherney wrote:

Hi all, Is it possible to change residue or atom occupancies in coot?

Maia



Yes.


http://www.ysbl.york.ac.uk/~emsley/coot/doc/chapters/user-manual_5.html#SEC147



Re: [COOT] Mac version of coot

2009-06-23 Thread chern

Hi,
I am trying to find the latest version (0.6) of coot for Mac with nice 
icons. Is there such a version?


Maia



- Original Message - 
From: Paul Emsley paul.ems...@bioch.ox.ac.uk

To: COOT@JISCMAIL.AC.UK
Sent: Tuesday, June 23, 2009 9:38 AM
Subject: Re: Novel maps...





Maia Cherney wrote:

Hi all, Is it possible to change residue or atom occupancies in coot?

Maia



Yes.


http://www.ysbl.york.ac.uk/~emsley/coot/doc/chapters/user-manual_5.html#SEC147