[COOT] Nucleic acids residue names
Dear all, Is there a way to ask Coot to write pdb coordinate files with nucleic acid residue names in 'standard' PDB format? That is: DA, DC, DG, DT, A, C, G, T... Sorry, this may have been solved already, but I just found an old message (http://www.ysbl.york.ac.uk/~emsley/coot/mbox-2006/0227.html) with a perl solution put forward by Bill Scott. I wonder if a preference setting could be changed so there is no need to resort to external file editing. Thanks! -- Miguel Architecture et Fonction des Macromolécules Biologiques (UMR6098) CNRS, Universités d'Aix-Marseille I II Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France Tel: +33(0) 491 82 55 93 Fax: +33(0) 491 26 67 20 e-mail: miguel.ortiz-lombar...@afmb.univ-mrs.fr Web: http://www.pangea.org/mol/spip.php?rubrique2 smime.p7s Description: S/MIME cryptographic signature
[COOT] rigid-body fit by residue ranges
Dear experts I'm interested in the newly implemented rigid-body fit by residue ranges (not a zone). Could anyone tell me how to get it to work in guile/python, which doesn't seem to be documented online? Thanks very much for you time in advance, kami Tatsuya KAMINISHI, Ph.D.
Re: [COOT] Nucleic acids residue names
Miguel Ortiz Lombardia wrote: Dear all, Is there a way to ask Coot to write pdb coordinate files with nucleic acid residue names in 'standard' PDB format? That is: DA, DC, DG, DT, A, C, G, T... No. It's on the list. I will use the PDB-approved nomenclature. Sorry, this may have been solved already, but I just found an old message (http://www.ysbl.york.ac.uk/~emsley/coot/mbox-2006/0227.html) with a perl solution put forward by Bill Scott. I wonder if a preference setting could be changed so there is no need to resort to external file editing. Not yet. Paul.
