[COOT] CeBEM-CCP4 Macromolecular Crystallography Workshop 2013 at Montevideo: Application deadline extended

2013-02-08 Thread Alejandro Buschiazzo

Dear Colleagues,

Due to the application deadline originally scheduled for February 10, 
overlapping with Summer holiday dates in several South American 
countries, we have decided to extend the course application deadline 
UNTIL FEBRUARY 17, 2013.



We invite all of you interested in this workshop, especially the ones 
that have contacted us, to take advantage of this opportunity and send 
your application forms (plus CV and letter of your supervisor): last 
days for applications open!!



Find all details about the workshop and application form in 
www.pasteur.edu.uy/mx2013 http://www.pasteur.edu.uy/mx2013- for 
further inquiries and applications contact mx2...@pasteur.edu.uy 
mailto:mx2...@pasteur.edu.uy!



*Second Macromolecular Crystallography School 2013 *at the Institut 
Pasteur de Montevideo (Uruguay).


*Title:*

Macromolecular Crystallography School 2013: From data processing to 
structure refinement and beyond


*Dates:*April 9th-17th, 2013.

*Site:*Institut Pasteur de Montevideo (Montevideo), Uruguay

*The workshop content:*

Conceived to provide theoretical background and hands-on abilities in 
the use of computational tools to exploit X ray diffraction data. 
Through lectures, tutorials and hands-on trouble-shooting, the students 
will be trained in state-of-the-art macromolecular crystallography. 
Particular emphasis will be given to data processing, phasing/structure 
determination and model refinement/validation.


The workshop will feature authors and experts of many modern 
crystallographic software packages.


This workshop represents the continuation within the series started in 
2010 (http://www.pasteur.edu.uy/mxcourse) on Macromolecular 
Crystallography.


In this opportunity it is being co-organized by the Center for 
Structural Biology of the Mercosur CeBEM (www.cebem.org.ar 
http://www.cebem.org.ar), jointly with the Collaborative Computational 
Project Number 4 (CCP4 -- UK www.ccp4.ac.uk http://www.ccp4.ac.uk). 
Support from the Institut Pasteur International Network, the 
International Union of Crystallography and Institut Pasteur de 
Montevideo is also greatly acknowledged.


*Applicants:*

Graduate students, postdoctoral researchers and young scientists are 
encouraged to apply. Only 20 applicants will be selected for 
participation. Participants of the workshop are strongly encouraged to 
bring their own problem data sets so they can be used during the 
workshop's hands-on sessions.


There is no registration fee.

Support for accommodation, per diem and local transportation will be 
provided to all participants from abroad.


Support to cover travel expenses will be considered on a case-by-case 
basis. Specific requests should be well-grounded as we will only be able 
to select a limited number.


*Application:*

Application *deadline has now been extended until February 17, 2013*. 
Application form, the program, contact info and other details can be 
found at www.pasteur.edu.uy/mx2013 http://www.pasteur.edu.uy/mx2013


Please address further inquiries to mx2...@pasteur.edu.uy 
mailto:mx2...@pasteur.edu.uy


Ronan Keegan and Alejandro Buschiazzo

--
Alejandro Buschiazzo, PhD
Research Scientist
Unit of Protein Crystallography
Institut Pasteur de Montevideo
Mataojo 2020
Montevideo 11400
URUGUAY
Phone: +598 25220910 int. 120
Fax:   +598 25224185
http://www.pasteur.edu.uy/pxf



[COOT] coot crushes in the beginning

2013-02-08 Thread Arto
Hey,

My coot does not start up anymore. Yesterday I done fink selfupdate and added:
(define *probe-command* probe)
(define *reduce-command* reduce)
(set-find-hydrogen-torsion 1)
(set-do-probe-dots-on-rotamers-and-chis 1)
(set-do-probe-dots-post-refine 1)
(set-rotamer-lowest-probability 0.5)

to use Probe Clashes. It worked fine yesterday, but today, when typing coot in 
my terminal then it starts to read up and then crashes suddenly (it even in 
short moment shows my previous map and coordinates and floating center) but 
then it crashes. Any idea to fix it? The last output in terminal is:

INFO:: loading preferences file 
/Users/pulk/.coot-preferences/0-coot-history.scm 
(filter-fileselection-filenames-state)
(get-active-map-drag-flag)
(use-graphics-interface-state)
(set-display-intro-string Good Evening Pulk, Welcome to Coot. 0.7 (revision 
4459)  [with guile 1.8.8 embedded] [with python 2.7.3 embedded])
(set-filter-fileselection-filenames 0)
(unset-sticky-sort-by-date)
(set-colour-map-rotation-on-read-pdb 21.00)
 update_additional_representations() 0
(set-colour-map-rotation-on-read-pdb-c-only-flag 1)
(set-density-size 25.00)
(set-swap-difference-map-colours 0)
Backtrace:
In /Users/pulk/.coot-preferences/0-coot-history.scm:
  11: 0* (set-colour-map-rotation-for-maps 14.0)

/Users/pulk/.coot-preferences/0-coot-history.scm:11:1: In expression 
(set-colour-map-rotation-for-maps 14.0):
/Users/pulk/.coot-preferences/0-coot-history.scm:11:1: Unbound variable: 
set-colour-map-rotation-for-maps

Some deprecated features have been used.  Set the environment
variable GUILE_WARN_DEPRECATED to detailed and rerun the
program to get more information.  Set it to no to suppress
this message.
ObjectCache: Leaked 0001 refs to P 1 Nuvw = ( 168, 288, 162)
ObjectCache: Leaked 0001 refs to P 1


Best,
Arto


Re: [COOT] coot crushes in the beginning

2013-02-08 Thread William G. Scott
On Feb 8, 2013, at 3:29 PM, Arto artop...@berkeley.edu wrote:

 /Users/pulk/.coot-preferences/0-coot-history.scm

Try moving or deleting that file and see if it works again.