Re: [COOT] trouble with autoinstaller
On 14/08/13 18:24, Paul Emsley wrote: On 14/08/13 07:37, John Bruning wrote: Hi, I have CentOS 6.4. I am trying to use the autoinstaller script to install the 0.8 pre-release. After the ./configure command it fails saying it can’t find clipper. Yum says I have the most recent release of clipper (2.1.11) and I have all the dependencies needed to run clipper. Any thoughts? Hi John, It is not clear to me if you are using build-it-gtk2-simple https://code.google.com/p/coot/source/browse/trunk/build-it-gtk2-simple I presume that you are reporting text in the 16-coot.txt file, is that the case? Just give me a day or so and I will throw up a 64-bit RHEL 6.4 binary. Regards, Paul. You can find a 64-bit RHEL 6.4 binary here: http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/binaries/pre-release/ Paul.
Re: [COOT] trouble with autoinstaller
On 14/08/13 07:37, John Bruning wrote: Hi, I have CentOS 6.4. I am trying to use the autoinstaller script to install the 0.8 pre-release. After the ./configure command it fails saying it can’t find clipper. Yum says I have the most recent release of clipper (2.1.11) and I have all the dependencies needed to run clipper. Any thoughts? Hi John, It is not clear to me if you are using build-it-gtk2-simple https://code.google.com/p/coot/source/browse/trunk/build-it-gtk2-simple I presume that you are reporting text in the 16-coot.txt file, is that the case? Just give me a day or so and I will throw up a 64-bit RHEL 6.4 binary. Regards, Paul.
Re: [COOT] RPM coot on Fedora 19
On Wed, Aug 14, 2013 at 9:58 AM, Paul Emsley wrote: > On 14/08/13 17:42, David Schuller wrote: > >> The RPM version of COOT on Fedora 19 appears to have some dependency >> issues with libssm and libclipper. >> >> # yum install coot >> Loaded plugins: langpacks, refresh-packagekit >> Resolving Dependencies >> --> Running transaction check >> ---> Package coot.x86_64 0:0.7-1.20120929svn4458.fc18 will be installed >> --> Processing Dependency: libssm.so.0()(64bit) for package: >> coot-0.7-1.20120929svn4458.**fc18.x86_64 >> --> Processing Dependency: libclipper.so.2()(64bit) for package: >> coot-0.7-1.20120929svn4458.**fc18.x86_64 >> --> Finished Dependency Resolution >> Error: Package: coot-0.7-1.20120929svn4458.**fc18.x86_64 (fedora) >>Requires: libssm.so.0()(64bit) >>Available: ssm-1.1-5.fc19.x86_64 (fedora) >>libssm.so.0()(64bit) >>Installed: ssm-1.3-1.fc19.x86_64 (@updates) >> ~libssm.so.1()(64bit) >> Error: Package: coot-0.7-1.20120929svn4458.**fc18.x86_64 (fedora) >>Requires: libclipper.so.2()(64bit) >>Available: clipper-2.1-18.20100511cvs.**fc19.x86_64 (fedora) >>libclipper.so.2()(64bit) >>Installed: clipper-2.1-22.20130601.fc19.**x86_64 (@updates) >>Not found >> You could try using --skip-broken to work around the problem >> You could try running: rpm -Va --nofiles --nodigest >> >> > This looks like a Tim Fenn problem. > > Having said that I should ease his task by using ssm-1.1. > > It is my problem! :P There is a fix on the way (I hope!): Package coot-0.7-5.20120929svn4458.fc19: * should fix your issue, * was pushed to the Fedora 19 testing repository, * should be available at your local mirror within two days. Update it with: # su -c 'yum update --enablerepo=updates-testing coot-0.7-5.20120929svn4458.fc19' as soon as you are able to. Please go to the following url: https://admin.fedoraproject.org/updates/FEDORA-2013-14664/coot-0.7-5.20120929svn4458.fc19 then log in and leave karma (feedback).
Re: [COOT] RPM coot on Fedora 19
On 14/08/13 17:42, David Schuller wrote: The RPM version of COOT on Fedora 19 appears to have some dependency issues with libssm and libclipper. # yum install coot Loaded plugins: langpacks, refresh-packagekit Resolving Dependencies --> Running transaction check ---> Package coot.x86_64 0:0.7-1.20120929svn4458.fc18 will be installed --> Processing Dependency: libssm.so.0()(64bit) for package: coot-0.7-1.20120929svn4458.fc18.x86_64 --> Processing Dependency: libclipper.so.2()(64bit) for package: coot-0.7-1.20120929svn4458.fc18.x86_64 --> Finished Dependency Resolution Error: Package: coot-0.7-1.20120929svn4458.fc18.x86_64 (fedora) Requires: libssm.so.0()(64bit) Available: ssm-1.1-5.fc19.x86_64 (fedora) libssm.so.0()(64bit) Installed: ssm-1.3-1.fc19.x86_64 (@updates) ~libssm.so.1()(64bit) Error: Package: coot-0.7-1.20120929svn4458.fc18.x86_64 (fedora) Requires: libclipper.so.2()(64bit) Available: clipper-2.1-18.20100511cvs.fc19.x86_64 (fedora) libclipper.so.2()(64bit) Installed: clipper-2.1-22.20130601.fc19.x86_64 (@updates) Not found You could try using --skip-broken to work around the problem You could try running: rpm -Va --nofiles --nodigest This looks like a Tim Fenn problem. Having said that I should ease his task by using ssm-1.1. Paul.
[COOT] RPM coot on Fedora 19
The RPM version of COOT on Fedora 19 appears to have some dependency issues with libssm and libclipper. # yum install coot Loaded plugins: langpacks, refresh-packagekit Resolving Dependencies --> Running transaction check ---> Package coot.x86_64 0:0.7-1.20120929svn4458.fc18 will be installed --> Processing Dependency: libssm.so.0()(64bit) for package: coot-0.7-1.20120929svn4458.fc18.x86_64 --> Processing Dependency: libclipper.so.2()(64bit) for package: coot-0.7-1.20120929svn4458.fc18.x86_64 --> Finished Dependency Resolution Error: Package: coot-0.7-1.20120929svn4458.fc18.x86_64 (fedora) Requires: libssm.so.0()(64bit) Available: ssm-1.1-5.fc19.x86_64 (fedora) libssm.so.0()(64bit) Installed: ssm-1.3-1.fc19.x86_64 (@updates) ~libssm.so.1()(64bit) Error: Package: coot-0.7-1.20120929svn4458.fc18.x86_64 (fedora) Requires: libclipper.so.2()(64bit) Available: clipper-2.1-18.20100511cvs.fc19.x86_64 (fedora) libclipper.so.2()(64bit) Installed: clipper-2.1-22.20130601.fc19.x86_64 (@updates) Not found You could try using --skip-broken to work around the problem You could try running: rpm -Va --nofiles --nodigest -- === All Things Serve the Beam === David J. Schuller modern man in a post-modern world MacCHESS, Cornell University schul...@cornell.edu
