Re: [COOT] Coot 1.0 installation
If you must try Coot 1, there is a binary available in the science repo for OpenSUSE Tumbleweed. That's the only Coot 1 binary I am aware of. Jul 11, 2023 3:03:54 AM Charles BARCHET : Dear all, I am currently trying to compile Coot 1.0 on Ubuntu 22.04. After downloading all the necessary binaries, I end up with a python version error message : *:1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -I/usr/include/python3.10 checking for Python library path... :4: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :4: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead :3: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :3: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead :2: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :2: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -L/usr/lib/x86_64-linux-gnu -lpython3.10 checking for Python site-packages path... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead /usr/lib/python3/dist-packages checking python extra libraries... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -lcrypt -ldl -lm -lm checking python extra linking flags... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions checking consistency of all components of python development environment... no configure: error: in `/home/barchetc/Downloads/coot1/coot-1': configure: error: Could not link test program to Python. Maybe the main Python library has been installed in some non-standard library path. If so, pass it to configure, via the LIBS environment variable. Example: ./configure LIBS="-L/usr/non-standard-path/python/lib" ERROR! You probably have to install the development version of the Python package for your distribution. The exact name of this package varies among them. * I have tried using "update-alternatives" to fix this issue but it didn't work. Is it possible to get a precompiled version somewhere or to help me fix this problem ? Thank you, Charles To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 -- Best Regards, Colin Gauvin Sent from my mobile device. To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [COOT] Coot 1.0 installation
On 11/07/2023 09:53, Charles BARCHET wrote: Dear all, I am currently trying to compile Coot 1.0 on Ubuntu 22.04. After downloading all the necessary binaries, I end up with a python version error message : *:1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -I/usr/include/python3.10 * I am presuming that you ran this script: https://raw.githubusercontent.com/pemsley/coot/gtk3/build-it-3-3 Is that right? For the record, although that should work (I'd like that to work) I have spend little time on it over the past year. Ubuntu 22.04 comes with GTK4, I think, so you should be able to use https://raw.githubusercontent.com/pemsley/coot/main/build-it-3-3. Anyway, it is not clear to me what you did to make the above message happen. It certainly doesn't look like a standard Coot startup message. What did you do to make that happen? > I have tried using "update-alternatives" to fix this issue but it didn't work. I don't know what this means. > Is it possible to get a pre-compiled version somewhere or to help me fix this problem ? Sadly not. Building binaries is practically a full-time job and I just don't have time to fit it into my day at the moment. Regards, Paul. To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
[COOT] Coot 1.0 installation
Dear all, I am currently trying to compile Coot 1.0 on Ubuntu 22.04. After downloading all the necessary binaries, I end up with a python version error message : :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -I/usr/include/python3.10 checking for Python library path... :4: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :4: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead :3: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :3: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead :2: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :2: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -L/usr/lib/x86_64-linux-gnu -lpython3.10 checking for Python site-packages path... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead /usr/lib/python3/dist-packages checking python extra libraries... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -lcrypt -ldl -lm -lm checking python extra linking flags... :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions checking consistency of all components of python development environment... no configure: error: in `/home/barchetc/Downloads/coot1/coot-1': configure: error: Could not link test program to Python. Maybe the main Python library has been installed in some non-standard library path. If so, pass it to configure, via the LIBS environment variable. Example: ./configure LIBS="-L/usr/non-standard-path/python/lib" ERROR! You probably have to install the development version of the Python package for your distribution. The exact name of this package varies among them. I have tried using "update-alternatives" to fix this issue but it didn't work. Is it possible to get a precompiled version somewhere or to help me fix this problem ? Thank you, Charles To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/