Hi Hari,
To make it easy on Macs, we usually download and install CCP4, which comes with
pre-compiled binaries for coot as well. In terms of size of the package it is
an overkill but it is usually straight forward to install and it also provides
a lot of other useful programs. You could try under Linux.
Cheers,
christian
From: Mailing list for users of COOT Crystallographic Software
on behalf of hari jayaram
Date: Wednesday, May 24, 2023 at 09:24
To: COOT@JISCMAIL.AC.UK
Subject: [EXTERNAL] Re: (Re)beginner question about coot binary version on
Linux Ubuntu
Hi All
I am making some progress--but still cant get any of the binaries working
I have the openssl libraries installed but still get the following error with
coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python
Thanks for your help
Hari
"hari@LT-Hari-Linux:/usr/lib/x86_64-linux-gnu$
~/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/bin/coot
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin:
libcrypto.so.1.1: version `OPENSSL_1_1_0' not found (required by
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libcurl.so.4)
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin:
/lib/libssl.so.1.1: version `OPENSSL_1_1_1' not found (required by
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libcurl.so.4)
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin:
/lib/libssl.so.1.1: version `OPENSSL_1_1_0' not found (required by
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libcurl.so.4)
. -- Coot crashed - trying to diagnose -
ldd -r on guile gives:
linux-vdso.so.1 (0x7ffdbdfae000)
libguile.so.17 =>
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libguile.so.17
(0x7f6d85ccc000)
libc.so.6 (0x7f6d85aa4000)
libgmp.so.10 =>
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libgmp.so.10
(0x7f6d85a2b000)
libcrypt.so.1 (0x7f6d859ef000)
libm.so.6 (0x7f6d85908000)
libltdl.so.3 =>
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libltdl.so.3
(0x7f6d858fd000)
libpthread.so.0 (0x7f6d858f8000)
/lib64/ld-linux-x86-64.so.2 (0x7f6d85dd2000)
libdl.so.2 (0x7f6d858f3000)
Guile 1.8.8
Copyright (c) 1995, 1996, 1997, 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007,
2008 Free Software Foundation
Guile may be distributed under the terms of the GNU General Public Licence;
certain other uses are permitted as well. For details, see the file
`COPYING', which is included in the Guile distribution.
There is no warranty, to the extent permitted by law.
catching the crash log:
coot-exe:
"/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin"
/usr/bin/ls
-rwxr-xr-x 1 hari hari 423402112 Mar 10 2022
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin
coot-version:
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin:
libcrypto.so.1.1: version `OPENSSL_1_1_0' not found (required by
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libcurl.so.4)
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin:
/lib/libssl.so.1.1: version `OPENSSL_1_1_1' not found (required by
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libcurl.so.4)
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/libexec/coot-bin:
/lib/libssl.so.1.1: version `OPENSSL_1_1_0' not found (required by
/home/hari/coot-Linux-x86_64-ubuntu-20.04.4-gtk2-python/lib/libcurl.so.4)
platform:
/usr/bin/uname
Linux LT-Hari-Linux 5.15.0-56-generic #62-Ubuntu SMP Tue Nov 22 19:54:14 UTC
2022 x86_64 x86_64 x86_64 GNU/Linux
core: #f
No core file found. No debugging
"
On Tue, May 23, 2023 at 9:13 PM hari jayaram
mailto:hari...@gmail.com>> wrote:
Hi All
I want to get back to using coot to build some models after a gap of 8 years.
I have access to a Linux laptop and can put any OS version on it.
I was wondering what the easiest way forward is —get the most recent Ubuntu
and pull the latest binary ( 0.9.8.6 with binary for 20.04) or put the iso that
coot was built for (20.04) on the laptop and start using it.
Asking because I just tried using the newest mint distro ( Mint 21.1 Vera) and
one of the binaries (coot-Linux-x86_64-scientific-linux-7.6-gtk2-python) and
it runs aground without OpenSSL and ldap.so versions are being mismatched.
When I switched to coot-0.9.8-binary-Linux-x86_64-ubuntu-20.04.4-python-gtk2
then it complained of a version mismatch for libssl.so.1.1
Thanks for your help in advance
Hari
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