[COOT] ScalarValue display Electrostatic Surfaces
When I display an electrostatic surface via extensions - representations, is there a default flag I can toggle to display colourbyScalarValues in the Coot viewing area, or is there some way that I can manually change the colouring scheme so I can include it in a ray png? Thank you for your time, Emil Sanchez Washington State University
[COOT] Problem with Extension- Phosphorylate this Residue
Hello all, this is my first post and I apologize if there is redundancy, but from previous searches of the archives on this board, I did not find an issue similar to mine. I am attempting to phosphorylate a threonine residue, however, I get this error: monomer-molecule-from-3-let-code TPO ) /usr/local/src/Coot/bin/libcheck /usr/local/src/Coot/bin/libcheck ERROR: cant open (lib) list/mon_lib_list exit status: 0 INFO:: libcheck status: 0 libcheck failed to write the output cif file. (get-monomer TPO) The full log is in the attached part. I therefore tried to circumvent this by loading in a clean TPO.cif and TPO.pdb and manually deleting the threonine and renaming / renumbering / merging into the original PDB. When I do a subsequent refinement, I want to edit the sidechain angles, the selection window for choosing which bond angles to modify, there are no applicable selections. I appreciate any feedback the community has to offer and thank you for your time E. Sanchez
[COOT] My mistake, 2nd attempt Extension - Phosphorylate this residue
Hello all, this is my first post and I apologize if there is redundancy, but from previous searches of the archives on this board, I did not find an issue similar to mine. I am attempting to phosphorylate a threonine residue, however, I get this error: monomer-molecule-from-3-let-code TPO ) /usr/local/src/Coot/bin/libcheck /usr/local/src/Coot/bin/libcheck ERROR: cant open (lib) list/mon_lib_list exit status: 0 INFO:: libcheck status: 0 libcheck failed to write the output cif file. (get-monomer TPO) The full log is in the attached part. I therefore tried to circumvent this by loading in a clean TPO.cif and TPO.pdb and manually deleting the threonine and renaming / renumbering / merging into the original PDB. When I do a subsequent refinement, I want to edit the sidechain angles, the selection window for choosing which bond angles to modify, there are no applicable selections. I appreciate any feedback the community has to offer and thank you for your time E. Sanchez
