Re: [COOT] Add other solvent molecules setting

2013-02-14 Thread Debreczeni, Judit
Yes, it can be added to the .coot file like this:

(append! *solvent-ligand-list* (list TRS))

or like this for multiple molecules:

(append! *solvent-ligand-list* (list TRS XXX YYY))





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-Original Message-
 From: Mailing list for users of COOT Crystallographic Software
 [mailto:COOT@JISCMAIL.AC.UK] On Behalf Of Ulrich Gohlke
 Sent: 14 February 2013 10:48
 To: COOT@JISCMAIL.AC.UK
 Subject: [COOT] Add other solvent molecules setting

 Dear crystalleagues,

  in Extensions - Modelling - Add Other Solvent Molecules..., is there
 a way to add common compounds such as TRS to the pre-selected molecules
 permanently, i.e. one doesn't have to Add a new Residue Type every
 time Coot is started? Can this be added to the .coot file or something?

 Cheers,

  Uli

 ---
 

 dr ulrich gohlke

 staff scientist - macromolecular structure and interaction

 max-delbrück-center for molecular medicine (mdc)

 +49 30 9406 - 2725 (w)

 +49 30 9406 - 2548 (fax)

 ulrich.goh...@mdc-berlin.de

 http://www.mdc-
 berlin.de/en/research/research_teams/macromolecular_structure_and_inter
 action/


Re: [COOT] Add other solvent molecules setting

2013-02-14 Thread Bernhard Lohkamp

Just for completeness, there is actually an extra function for this:

(define *additional-solvent-ligands* '())

which can be added to the .coot file.

B

On 14/02/2013 17:10, Debreczeni, Judit wrote:

Yes, it can be added to the .coot file like this:

(append! *solvent-ligand-list* (list TRS))

or like this for multiple molecules:

(append! *solvent-ligand-list* (list TRS XXX YYY))







--
AstraZeneca UK Limited is a company incorporated in England and Wales with 
registered number: 03674842 and a registered office at 2 Kingdom Street, 
London, W2 6BD.
Confidentiality Notice: This message is private and may contain confidential, 
proprietary and legally privileged information. If you have received this 
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and may be unlawful.
Disclaimer: Email messages may be subject to delays, interception, non-delivery 
and unauthorised alterations. Therefore, information expressed in this message 
is not given or endorsed by AstraZeneca UK Limited unless otherwise notified by 
an authorised representative independent of this message. No contractual 
relationship is created by this message by any person unless specifically 
indicated by agreement in writing other than email.
Monitoring: AstraZeneca UK Limited may monitor email traffic data and content 
for the purposes of the prevention and detection of crime, ensuring the 
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Conduct and Policies.
-Original Message-

From: Mailing list for users of COOT Crystallographic Software
[mailto:COOT@JISCMAIL.AC.UK] On Behalf Of Ulrich Gohlke
Sent: 14 February 2013 10:48
To: COOT@JISCMAIL.AC.UK
Subject: [COOT] Add other solvent molecules setting

Dear crystalleagues,

  in Extensions - Modelling - Add Other Solvent Molecules..., is there
a way to add common compounds such as TRS to the pre-selected molecules
permanently, i.e. one doesn't have to Add a new Residue Type every
time Coot is started? Can this be added to the .coot file or something?

Cheers,

  Uli

---


dr ulrich gohlke

staff scientist - macromolecular structure and interaction

max-delbrück-center for molecular medicine (mdc)

+49 30 9406 - 2725 (w)

+49 30 9406 - 2548 (fax)

ulrich.goh...@mdc-berlin.de

http://www.mdc-
berlin.de/en/research/research_teams/macromolecular_structure_and_inter
action/


--
***

Dr. Bernhard Lohkamp
Assistant Professor
Div. Molecular Structural Biology
Dept. of Medical Biochemistry and Biophysics (MBB)
Karolinska Institutet
S-17177 Stockholm
Sweden

phone: (+46) 08-52487651
fax:   (+46) 08-327626
email: bernhard.lohk...@ki.se