Re: [COOT] Centos issues
Thanks Paul, This this seems to have solved the problem. Best, Alan From: Mailing list for users of COOT Crystallographic Software On Behalf Of Paul Emsley Sent: Friday, February 18, 2022 3:16 PM To: COOT@JISCMAIL.AC.UK Subject: Re: Centos issues EXTERNAL EMAIL – Use caution with any links or file attachments. Hi Alan, I updated my machine to match yours and the CentOS7 binaries for 0.9.7 are now on-line https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/binaries/release/coot-0.9.7-binary-Linux-x86_64-centos-7-python-gtk2.tar.gz Regards, Paul. p.s. Quadro P4000... nice On 15/02/2022 20:53, Hruza, Alan wrote: Hi all, Recently we (IT) tried to upgrade our Linux box to a newer version of Centos7 and it seemed to break the graphics. By breaking, I mean when Coot is launched, there are no errors (except for a library that was missing and was installed now) But as I use Coot the display ( Sequence ) gets garbled and is not viable. Anyone else come across this issue before. Thanks for any help. Alan PS we are running: Coot 0.9.4 Operating System: CentOS Linux 7 (Core) CPE OS Name: cpe:/o:centos:centos:7 Kernel: Linux 3.10.0-1160.45.1.el7.x86_64 Architecture: x86-64 +-+ | NVIDIA-SMI 470.82.00Driver Version: 470.82.00CUDA Version: 11.4 | |---+--+--+ | GPU NamePersistence-M| Bus-IdDisp.A | Volatile Uncorr. ECC | | Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. | | | | MIG M. | |===+==+==| | 0 Quadro P4000Off | :18:00.0 On | N/A | | 46% 34CP8 7W / 105W |170MiB / 8119MiB | 0% Default | | | | N/A | +---+--+--+ To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 Notice: This e-mail message, together with any attachments, contains information of Merck & Co., Inc. (2000 Galloping Hill Road, Kenilworth, New Jersey, USA 07033), and/or its affiliates Direct contact information for affiliates is available at http://www.merck.com/contact/contacts.html) that may be confidential, proprietary copyrighted and/or legally privileged. It is intended solely for the use of the individual or entity named on this message. If you are not the intended recipient, and have received this message in error, please notify us immediately by reply e-mail and then delete it from your system. To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [COOT] Centos issues
Hi Alan, I updated my machine to match yours and the CentOS7 binaries for 0.9.7 are now on-line https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/binaries/release/coot-0.9.7-binary-Linux-x86_64-centos-7-python-gtk2.tar.gz Regards, Paul. p.s. Quadro P4000... nice On 15/02/2022 20:53, Hruza, Alan wrote: Hi all, Recently we (IT) tried to upgrade our Linux box to a newer version of Centos7 and it seemed to break the graphics. By breaking, I mean when Coot is launched, there are no errors (except for a library that was missing and was installed now) But as I use Coot the display ( Sequence ) gets garbled and is not viable. Anyone else come across this issue before. Thanks for any help. Alan PS we are running: Coot 0.9.4 Operating System: CentOS Linux 7 (Core) CPE OS Name: cpe:/o:centos:centos:7 Kernel: Linux 3.10.0-1160.45.1.el7.x86_64 Architecture: x86-64 +-+ | NVIDIA-SMI 470.82.00 Driver Version: 470.82.00 CUDA Version: 11.4 | |---+--+--+ | GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC | | Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. | | | | MIG M. | |===+==+==| | 0 Quadro P4000 Off | :18:00.0 On | N/A | | 46% 34C P8 7W / 105W | 170MiB / 8119MiB | 0% Default | | | | N/A | +---+--+--+ To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [COOT] Centos issues
On 15/02/2022 20:53, Hruza, Alan wrote: Hi all, Recently we (IT) tried to upgrade our Linux box to a newer version of Centos7 and it seemed to break the graphics. By breaking, I mean when Coot is launched, there are no errors (except for a library that was missing and was installed now) But as I use Coot the display ( Sequence ) gets garbled and is not viable. Anyone else come across this issue before. Hi Alan, I have not yet uploaded the CentOS binaries for 0.9.7 so it is not clear which binaries you are using. My CentOS virtual machine is down at the moment. For the record, which OS version are you using? (if it is more recent that mine, I will upgrade to match). Regards, Paul. To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [COOT] Centos issues
Already reported by Me. upgrade to 0.9.6 or 0.9.7. Although it still does not work correctly in 3D, since the windows are connected to 3D and the text is grabled. Centos 7 with Mate desktop works in 3D because stereo is associated with a window (stereo-in-a-window) which the Gnome desktop does stereo-in-a-desktop, so everything on the desktop is affected. set_sequence_view_is_docked(0) kas Kenneth A. Satyshur, M.S., Ph.D. Senior Scientist, College of Ag and Life Sciences: Department of Bacteriology; School of Medicine and Public Health: Departments of Biomolecular Chemistry, Neuroscience, Oncology, and Carbone Cancer Center (Small Molecule Screening Facility) University of Wisconsin-Madison Madison, Wisconsin, 53706 608-215-5207 From: Mailing list for users of COOT Crystallographic Software on behalf of Hruza, Alan <5e71eea46e75-dmarc-requ...@jiscmail.ac.uk> Sent: Tuesday, February 15, 2022 2:53 PM To: COOT@JISCMAIL.AC.UK Subject: Centos issues Hi all, Recently we (IT) tried to upgrade our Linux box to a newer version of Centos7 and it seemed to break the graphics. By breaking, I mean when Coot is launched, there are no errors (except for a library that was missing and was installed now) But as I use Coot the display ( Sequence ) gets garbled and is not viable. Anyone else come across this issue before. Thanks for any help. Alan PS we are running: Coot 0.9.4 Operating System: CentOS Linux 7 (Core) CPE OS Name: cpe:/o:centos:centos:7 Kernel: Linux 3.10.0-1160.45.1.el7.x86_64 Architecture: x86-64 +-+ | NVIDIA-SMI 470.82.00Driver Version: 470.82.00CUDA Version: 11.4 | |---+--+--+ | GPU NamePersistence-M| Bus-IdDisp.A | Volatile Uncorr. ECC | | Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. | | | | MIG M. | |===+==+==| | 0 Quadro P4000Off | :18:00.0 On | N/A | | 46% 34CP8 7W / 105W |170MiB / 8119MiB | 0% Default | | | | N/A | +---+--+--+ +-+ | Processes: | | GPU GI CIPID Type Process name GPU Memory | |ID ID Usage | |=| |0 N/A N/A 1837 G /usr/bin/X138MiB | |0 N/A N/A 25781 G ...A= --shared-files 29MiB | +-+ Notice: This e-mail message, together with any attachments, contains information of Merck & Co., Inc. (2000 Galloping Hill Road, Kenilworth, New Jersey, USA 07033), and/or its affiliates Direct contact information for affiliates is available at http://www.merck.com/contact/contacts.html) that may be confidential, proprietary copyrighted and/or legally privileged. It is intended solely for the use of the individual or entity named on this message. If you are not the intended recipient, and have received this message in error, please notify us immediately by reply e-mail and then delete it from your system. To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
[COOT] Centos issues
Hi all, Recently we (IT) tried to upgrade our Linux box to a newer version of Centos7 and it seemed to break the graphics. By breaking, I mean when Coot is launched, there are no errors (except for a library that was missing and was installed now) But as I use Coot the display ( Sequence ) gets garbled and is not viable. Anyone else come across this issue before. Thanks for any help. Alan PS we are running: Coot 0.9.4 Operating System: CentOS Linux 7 (Core) CPE OS Name: cpe:/o:centos:centos:7 Kernel: Linux 3.10.0-1160.45.1.el7.x86_64 Architecture: x86-64 +-+ | NVIDIA-SMI 470.82.00Driver Version: 470.82.00CUDA Version: 11.4 | |---+--+--+ | GPU NamePersistence-M| Bus-IdDisp.A | Volatile Uncorr. ECC | | Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. | | | | MIG M. | |===+==+==| | 0 Quadro P4000Off | :18:00.0 On | N/A | | 46% 34CP8 7W / 105W |170MiB / 8119MiB | 0% Default | | | | N/A | +---+--+--+ +-+ | Processes: | | GPU GI CIPID Type Process name GPU Memory | |ID ID Usage | |=| |0 N/A N/A 1837 G /usr/bin/X138MiB | |0 N/A N/A 25781 G ...A= --shared-files 29MiB | +-+ Notice: This e-mail message, together with any attachments, contains information of Merck & Co., Inc. (2000 Galloping Hill Road, Kenilworth, New Jersey, USA 07033), and/or its affiliates Direct contact information for affiliates is available at http://www.merck.com/contact/contacts.html) that may be confidential, proprietary copyrighted and/or legally privileged. It is intended solely for the use of the individual or entity named on this message. If you are not the intended recipient, and have received this message in error, please notify us immediately by reply e-mail and then delete it from your system. To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
