Re: [COOT] Coot 0.6.0 and sequence view
Paul Emsley wrote: Stefan Becker wrote: recently I installed Coot 0.6.0 and had so far no problems using it. Now I wanted to use it combined with shelxl refinement but encounter the problem that the Sequence view window in the Coot 0.6.0 version doesn´t present the chains as in earlier versions. I must number chains in Coot e.g. 1001, 2001, 3001 etc. for creating the shelxl .ins file. Now the sequence view in the new Coot version positions the chains along a number line and this line stops after 3245, so that I cannot see e.g. the glycerols that are in the 3000 range and the waters that are in the 4000 range. With the older Coot versions this was not an issue. There all chains were listed in rows below each other and there was no number line. Confirmed - even in the latest 0.6.2 pre. Stefan and others, This was due to a limitation - perhaps in X11, perhaps in the canvas widget, that allowed the maximum size of the canvas to be 2^16 pixels. Given that there are 8+2 pixels per letter and allowing for a bit of decoration, that implies a maximum residue number of 3250 or so in the new-style sequence viewer. I have reworked the logic of menu item select so that now for large SHELX molecules you get the old-style (without axes) sequence view. Thanks, Paul.
Re: [COOT] Coot 0.6.0 and sequence view
Stefan Becker wrote: recently I installed Coot 0.6.0 and had so far no problems using it. Now I wanted to use it combined with shelxl refinement but encounter the problem that the Sequence view window in the Coot 0.6.0 version doesn´t present the chains as in earlier versions. I must number chains in Coot e.g. 1001, 2001, 3001 etc. for creating the shelxl .ins file. Now the sequence view in the new Coot version positions the chains along a number line and this line stops after 3245, so that I cannot see e.g. the glycerols that are in the 3000 range and the waters that are in the 4000 range. With the older Coot versions this was not an issue. There all chains were listed in rows below each other and there was no number line. Confirmed - even in the latest 0.6.2 pre. This needs to be fixed. Thanks, Paul.
[COOT] Coot 0.6.0 and sequence view
Dear all, recently I installed Coot 0.6.0 and had so far no problems using it. Now I wanted to use it combined with shelxl refinement but encounter the problem that the Sequence view window in the Coot 0.6.0 version doesn´t present the chains as in earlier versions. I must number chains in Coot e.g. 1001, 2001, 3001 etc. for creating the shelxl .ins file. Now the sequence view in the new Coot version positions the chains along a number line and this line stops after 3245, so that I cannot see e.g. the glycerols that are in the 3000 range and the waters that are in the 4000 range. With the older Coot versions this was not an issue. There all chains were listed in rows below each other and there was no number line. Is there maybe a bugfix for the 0.6.0 version? Best wishes, Stefan Becker Dr. Stefan Becker Max Planck Institute for Biophysical Chemistry Dept. 10300 Am Fassberg 11 37077 Goettingen Germany Phone: +49 551 201 Fax: +49 551 201 2202 s...@nmr.mpibpc.mpg.de
