[COOT] phi/psi angles
Hello all, is it possible to get a listing of all phi/psi angles in the peptide? When I click on the Ramachandran plot they are printed to the console - how to I get the entire list non-interactively? Cheers, Tim -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A signature.asc Description: OpenPGP digital signature
Re: [COOT] phi/psi angles
On 11/03/14 11:13, Tim Gruene wrote: is it possible to get a listing of all phi/psi angles in the peptide? When I click on the Ramachandran plot they are printed to the console - how to I get the entire list non-interactively? Hi Tim, I've been wanting to add this for a while. But it's not done. You have access to the atoms coordinates of course with residue_info() but after that you're on your own :-( Paul.
Re: [COOT] phi/psi angles
Hi Tim, CCP4 program ANGLES will compute phi,psi for you, is this helps. Andrew On 11 Mar 2014, at 11:13, Tim Gruene wrote: > Hello all, > > is it possible to get a listing of all phi/psi angles in the peptide? > When I click on the Ramachandran plot they are printed to the console - > how to I get the entire list non-interactively? > > Cheers, Tim > -- > Dr Tim Gruene > Institut fuer anorganische Chemie > Tammannstr. 4 > D-37077 Goettingen > > GPG Key ID = A46BEE1A >
Re: [COOT] phi/psi angles
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Great! Thanks a lot, Andrew! Cheers, Tim On 03/11/2014 02:04 PM, Andrew Leslie wrote: > Hi Tim, > > CCP4 program ANGLES will compute phi,psi for you, is this helps. > > Andrew > > > On 11 Mar 2014, at 11:13, Tim Gruene > wrote: > >> Hello all, >> >> is it possible to get a listing of all phi/psi angles in the >> peptide? When I click on the Ramachandran plot they are printed >> to the console - how to I get the entire list non-interactively? >> >> Cheers, Tim -- Dr Tim Gruene Institut fuer anorganische Chemie >> Tammannstr. 4 D-37077 Goettingen >> >> GPG Key ID = A46BEE1A >> > - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.12 (GNU/Linux) Comment: Using GnuPG with Icedove - http://www.enigmail.net/ iD8DBQFTHxHJUxlJ7aRr7hoRAiXEAJ9kk2tOpR2uPNcbqR97HjqXtWT9ZgCdEVjO 5gumgMQicS8PV5foCLUPKJY= =3tHu -END PGP SIGNATURE-