Re: [COOT] set Coot download folder path in preferences
On 24/03/18 18:28, Kenneth Satyshur wrote: > > coot 0.8.9 crashes when reading cif file. I tried reading my G4P.cif > file and coot crashed with the following output: > > For the moment try using Modern fileselector dialogs (Edit Preferences General). Paul.
Re: [COOT] set Coot download folder path in preferences
coot 0.8.9 crashes when reading cif file. I tried reading my G4P.cif file and coot crashed with the following output: ** (coot-bin:167556): WARNING **: Widget not found: cif_dictionary_file_selector_create_molecule_checkbutton /home/xray/ccp4/ccp4-7.0/ccp4-7.0/bin/coot: line 288: 167556 Segmentation fault (core dumped) $coot_bin "$@" catching the crash log: Gtk-Message: Failed to load module "canberra-gtk-module" Gtk-Message: Failed to load module "pk-gtk-module" coot-exe: "/home/xray/ccp4/ccp4-7.0/ccp4-7.0/libexec/coot-bin" coot-version: /home/xray/ccp4/ccp4-7.0/ccp4-7.0/libexec/coot-bin platform: /bin/uname core: #f No core file found. No debugging Appears to crash for reading any cif restraints file. kas Kenneth A. Satyshur, M.S., Ph.D. Senior Scientist, Depts. Bacteriology, Bio Molecular Chemistry, Neuroscience, Oncology, Carbone Cancer Center, and the School of Pharmacy University of Wisconsin-Madison Madison, Wisconsin, 53706 608-215-5207 From: Mailing list for users of COOT Crystallographic Software on behalf of Paul Emsley Sent: Wednesday, March 21, 2018 8:42:49 PM To: COOT@JISCMAIL.AC.UK Subject: Re: set Coot download folder path in preferences On 19/03/2018 17:34, Xiao Lei wrote: > > I would like to change the default Coot download folder path (let's say after > fetch a pdb, Coot saved the > pdb in the default download folder). I looked into the Edit--> Preferences in > Coot and I could not find a > place to change the PATH. How could I find this option in Coot? > You could create a link from your chosen directory to coot-download in the current directory before coot creates the directory. Alternatively, you could use the dirty hack attached - edit it to set the directory that you choose and put this script in your ~/.coot-preferences directory. Paul.
Re: [COOT] set Coot download folder path in preferences
On 19/03/2018 17:34, Xiao Lei wrote: I would like to change the default Coot download folder path (let's say after fetch a pdb, Coot saved the pdb in the default download folder). I looked into the Edit--> Preferences in Coot and I could not find a place to change the PATH. How could I find this option in Coot? You could create a link from your chosen directory to coot-download in the current directory before coot creates the directory. Alternatively, you could use the dirty hack attached - edit it to set the directory that you choose and put this script in your ~/.coot-preferences directory. Paul. (define (my-chosen-download-directory) "/home/xiaolei/coot-download" ;; or some such ) (define (get-directory dir-name) (if (string? dir-name) (if (string=? dir-name "coot-download") (set! dir-name (my-chosen-download-directory (if (file-exists? dir-name) (if (is-directory? dir-name) dir-name #f) (let ((status (make-directory-maybe dir-name))) (if (= status 0) dir-name (let ((h (getenv "HOME"))) (if (not (string? h)) #f ;; couldnt find home. Baah. (begin (let ((new-dir (append-dir-dir h dir-name))) (let ((status (make-directory-maybe new-dir))) (if (= status 0) new-dir #f))
Re: [COOT] set Coot download folder path in preferences
This is currently not possible. Maybe something for the wishlist... B On 19/03/2018 18:34, Xiao Lei wrote: Dear Coot users, I would like to change the default Coot download folder path (let's say after fetch a pdb, Coot saved the pdb in the default download folder). I looked into the Edit--> Preferences in Coot and I could not find a place to change the PATH. How could I find this option in Coot? Thanks ahead. -- *** Dr. Bernhard Lohkamp Associate Professor/Docent Div. Molecular Structural Biology Dept. of Medical Biochemistry and Biophysics (MBB) Karolinska Institutet S-17177 Stockholm Sweden phone: (+46) 08-52487695 fax: (+46) 08-327626 email: bernhard.lohk...@ki.se
[COOT] set Coot download folder path in preferences
Dear Coot users, I would like to change the default Coot download folder path (let's say after fetch a pdb, Coot saved the pdb in the default download folder). I looked into the Edit--> Preferences in Coot and I could not find a place to change the PATH. How could I find this option in Coot? Thanks ahead.
