Re: [COOT] subversion build on ubuntu 9.04 fails : [: =: unary operator expected error
Hello , The jaunty 32 bit build seems to fail ( with subversion revision 2002 as well) It seems like based on what Ed Pozharsky wrote in ..its a problem with guile in Ubuntu jaunty (9.04) .. On my 32 bit , 9.04 installation , the build-it-gtk2-simple script chugs along fine and then declares the following contradictory message checking for Clipper... yes Congratulations, you are using Guile checking for guile... no configure: error: guile required but not found Regardless ..I will try Bill Scots or the CCP4 wiki methodhttp://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Custom_building_Coot_from_source_codeof separately compiling all the coot dependencies . But though I would wrote in to inquire if there was already a simpler fix. Thanks Hari On Fri, May 8, 2009 at 7:35 PM, Paul Emsley paul.ems...@bioch.ox.ac.ukwrote: hari jayaram wrote: Hi ..I tried a coot subversion (revision 1994) built-it-simple python on the newest ubuntu 9.04 The build crashes just after it builds guile and ( 16-coot.txt in the build directory ) reads : checking for Clipper... yes Congratulations, you are using Guile checking for guile... no configure: error: guile required but not found ./build-it-gtk2-simple: line 2742: [: =: unary operator expected NO need to update libtool /home/hari/autobuild/ex-charlie_2009-05-08__T20_14_49/coot-0.6-pre-1 make: *** No targets specified and no makefile found. Stop. This happens only on the new ubuntu (on a 32 bit 9.04 system) . I was able to build this revision without any problem on Ubuntu 8.04 64 bit Thanks update_libtool is not set sometimes, so using it as in 1994 is wrong. I've tweaked the script. But the problem for you lies above that.. checking for guile... no configure: error: guile required but not found Hmm! what went wrong there..? I'll try to build from scratch on Jaunty myself. Cheers, Paul.
Re: [COOT] subversion build on ubuntu 9.04 fails : [: =: unary operator expected error
I have the following guile-like stuff installed, if it is of any help:
diablo-% which dpkg-list
dpkg-list () {
dpkg --list \...@\*
}
diablo-% dpkg-list guile | grep ii
ii guile-1.6-libs
1.6.8-6.3ubuntu1 Main Guile libraries
ii guile-1.8
1.8.5+1-4.1ubuntu1 The GNU extension language
and Scheme interp
ii guile-1.8-dev
1.8.5+1-4.1ubuntu1 Development files for Guile 1.8
ii guile-1.8-doc
1.8.5+1-4.1ubuntu1 Documentation for Guile 1.8
ii guile-1.8-libs
1.8.5+1-4.1ubuntu1 Main Guile libraries
ii guile-g-wrap
1.9.11-1.1build1 scripting interface generator
for C - Guile
ii guile-gnome0-canvas
2.15.95-2ubuntu1 Guile bindings for
libgnomecanvas
ii guile-gnome0-glib
2.15.95-2ubuntu1 Guile bindings for GLib
ii guile-goosh
1.3-1Installs goosh
ii guile-gui
0.2-2Installs guile-gui for
guile-1.8
ii guile-lib
0.1.6Installs guile-lib
ii guile-net-http
0.3.1-1 Installs the net-http scm file
ii guile18-gtk
2.0 guile-gtk-2.0 for guile18
ii libguile-ltdl-1
1.6.8-6.3ubuntu1 Guile's patched version of
libtool's libltdl
I've also noticed that sometimes what the configure error reports
isn't accurate when you look at the log files -- it might be choking
on something else.
On May 12, 2009, at 8:11 AM, hari jayaram wrote:
Hello ,
The jaunty 32 bit build seems to fail ( with subversion revision
2002 as
well)
It seems like based on what Ed Pozharsky wrote in ..its a problem
with guile
in Ubuntu jaunty (9.04) ..
On my 32 bit , 9.04 installation , the build-it-gtk2-simple script
chugs
along fine and then declares the following contradictory message
checking for Clipper... yes
Congratulations, you are using Guile
checking for guile... no
configure: error: guile required but not found
Regardless ..I will try Bill Scots or the CCP4 wiki
methodhttp://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Custom_building_Coot_from_source_code
of
separately compiling all the coot dependencies . But though I would
wrote
in to inquire if there was already a simpler fix.
Thanks
Hari
On Fri, May 8, 2009 at 7:35 PM, Paul Emsley paul.ems...@bioch.ox.ac.uk
wrote:
hari jayaram wrote:
Hi ..I tried a coot subversion (revision 1994) built-it-simple
python on
the newest ubuntu 9.04
The build crashes just after it builds guile and ( 16-coot.txt in
the
build directory ) reads :
checking for Clipper... yes
Congratulations, you are using Guile
checking for guile... no
configure: error: guile required but not found
./build-it-gtk2-simple: line 2742: [: =: unary operator expected
NO need to update libtool
/home/hari/autobuild/ex-charlie_2009-05-08__T20_14_49/coot-0.6-pre-1
make: *** No targets specified and no makefile found. Stop.
This happens only on the new ubuntu (on a 32 bit 9.04 system) .
I was able to build this revision without any problem on Ubuntu
8.04 64
bit
Thanks update_libtool is not set sometimes, so using it as in 1994 is
wrong. I've tweaked the script.
But the problem for you lies above that..
checking for guile... no
configure: error: guile required but not found
Hmm! what went wrong there..?
I'll try to build from scratch on Jaunty myself.
Cheers,
Paul.
[COOT] subversion build on ubuntu 9.04 fails : [: =: unary operator expected error
Hi ..I tried a coot subversion (revision 1994) built-it-simple python on the newest ubuntu 9.04 The build crashes just after it builds guile and ( 16-coot.txt in the build directory ) reads : checking for Clipper... yes Congratulations, you are using Guile checking for guile... no configure: error: guile required but not found ./build-it-gtk2-simple: line 2742: [: =: unary operator expected NO need to update libtool /home/hari/autobuild/ex-charlie_2009-05-08__T20_14_49/coot-0.6-pre-1 make: *** No targets specified and no makefile found. Stop. This happens only on the new ubuntu (on a 32 bit 9.04 system) . I was able to build this revision without any problem on Ubuntu 8.04 64 bit Just thought I would write in , in case anybody was seeing the same problem or has a solution SOme of the other stuff also spooled to screen before the failure to build is pasted below: Thanks for your help Hari --2009-05-08 16:14:52-- http://www.mirrorservice.org/sites/ftp.gnu.org/gnu/guile/guile-1.8.5.tar.gz Resolving www.mirrorservice.org... 212.219.56.133, 212.219.56.134, 212.219.56.138, ... Connecting to www.mirrorservice.org|212.219.56.133|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 3933369 (3.8M) [application/x-gzip] Server file no newer than local file `/home/hari/autobuild//sources/guile-1.8.5.tar.gz' -- not retrieving. ./build-it-gtk2-simple: line 2395: 127: command not found --2009-05-08 16:16:05-- http://www.ysbl.york.ac.uk/~emsley/software/extras/net-http-0.3.1.tar.gz Resolving www.ysbl.york.ac.uk... 144.32.72.243 Connecting to www.ysbl.york.ac.uk|144.32.72.243|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 26907 (26K) [application/x-gzip] Server file no newer than local file `/home/hari/autobuild//sources/net-http-0.3.1.tar.gz' -- not retrieving. configure: warning: cannot execute guile-config configure: warning: cannot execute NONE-guile-config configure: warning: cannot execute NONE-guile-config ./configure: 580: is: not found sed: can't read Makefile: No such file or directory make: *** No rule to make target `install'. Stop. --2009-05-08 16:16:08-- http://www.ysbl.york.ac.uk/~emsley/software/extras/greg-2.0.0-pe.tar.gz Resolving www.ysbl.york.ac.uk... 144.32.72.243 Connecting to www.ysbl.york.ac.uk|144.32.72.243|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 453770 (443K) [application/x-gzip] Server file no newer than local file `/home/hari/autobuild//sources/greg-2.0.0-pe.tar.gz' -- not retrieving. --2009-05-08 16:16:17-- http://www.mirrorservice.org/sites/ftp.gnu.org/gnu/guile-gtk/guile-gtk-2.1.tar.gz Resolving www.mirrorservice.org... 212.219.56.138, 212.219.56.139, 212.219.56.153, ... Connecting to www.mirrorservice.org|212.219.56.138|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 781985 (764K) [application/x-gzip] Server file no newer than local file `/home/hari/autobuild//sources/guile-gtk-2.1.tar.gz' -- not retrieving. --2009-05-08 16:16:23-- http://www.ysbl.york.ac.uk/~emsley/software/extras/guile-gui-0.2.tar.gz Resolving www.ysbl.york.ac.uk... 144.32.72.243 Connecting to www.ysbl.york.ac.uk|144.32.72.243|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 33885 (33K) [application/x-gzip] Server file no newer than local file `/home/hari/autobuild//sources/guile-gui-0.2.tar.gz' -- not retrieving. --2009-05-08 16:16:24-- http://www.ysbl.york.ac.uk/~emsley/software/extras/neil-jerram.guile-gui.patch Resolving www.ysbl.york.ac.uk... 144.32.72.243 Connecting to www.ysbl.york.ac.uk|144.32.72.243|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 3779 (3.7K) [text/plain] Server file no newer than local file `/home/hari/autobuild//sources/neil-jerram.guile-gui.patch' -- not retrieving. --2009-05-08 16:16:24-- http://www.ysbl.york.ac.uk/~emsley/software/extras/guile-gui-patch-post-neil.patch Resolving www.ysbl.york.ac.uk... 144.32.72.243 Connecting to www.ysbl.york.ac.uk|144.32.72.243|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 3799 (3.7K) [text/plain] Server file no newer than local file `/home/hari/autobuild//sources/guile-gui-patch-post-neil.patch' -- not retrieving. --2009-05-08 16:16:25-- http://download.gna.org/guile-lib/guile-lib-0.1.6.tar.gz Resolving download.gna.org... 78.40.121.79 Connecting to download.gna.org|78.40.121.79|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 508682 (497K) [application/x-tar] Server file no newer than local file `/home/hari/autobuild//sources/guile-lib-0.1.6.tar.gz' -- not retrieving. BUILDING coot: version coot-0.6-pre-1-revision-1994, python=yes --2009-05-08 16:16:27-- http://www.ysbl.york.ac.uk/~emsley/software/pre-release/coot-0.6-pre-1-revision-1994.tar.gz Resolving www.ysbl.york.ac.uk... 144.32.72.243 Connecting to www.ysbl.york.ac.uk|144.32.72.243|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 10851590 (10M)
Re: [COOT] subversion build on ubuntu 9.04 fails : [: =: unary operator expected error
hari jayaram wrote: Hi ..I tried a coot subversion (revision 1994) built-it-simple python on the newest ubuntu 9.04 The build crashes just after it builds guile and ( 16-coot.txt in the build directory ) reads : checking for Clipper... yes Congratulations, you are using Guile checking for guile... no configure: error: guile required but not found ./build-it-gtk2-simple: line 2742: [: =: unary operator expected NO need to update libtool /home/hari/autobuild/ex-charlie_2009-05-08__T20_14_49/coot-0.6-pre-1 make: *** No targets specified and no makefile found. Stop. This happens only on the new ubuntu (on a 32 bit 9.04 system) . I was able to build this revision without any problem on Ubuntu 8.04 64 bit Thanks update_libtool is not set sometimes, so using it as in 1994 is wrong. I've tweaked the script. But the problem for you lies above that.. checking for guile... no configure: error: guile required but not found Hmm! what went wrong there..? I'll try to build from scratch on Jaunty myself. Cheers, Paul.
