Re: [COOT] Symbol not found: _iconv

2013-09-20 Thread William G. Scott
On Sep 20, 2013, at 6:54 AM, Daniele de Sanctis de.sanct...@gmail.com wrote:

 I already tried everything I found on the web (Reinstall OS, Repair disk
 etc). Thanks in advance for your help
 
 Daniele

Hi Daniele:

This is usually due to setting 

$DYLD_LIBRARY_PATH

which is best avoided.  I think the ccp4 shell initialization scripts do this 
still. 

If /Applications/coot.app  requires that, it is broken.

Before doing anything radical like reinstalling OS X, unsetting 
$DYLD_LIBRARY_PATH is at least worth a try, i.e.,

export DYLD_LIBRARY_PATH=  

on bash or zsh, or 

unsetenv DYLD_LIBRARY_PATH

on tcsh should do it.

Also, you could try installing coot from here, as a control (or an alternative):

http://scottlab.ucsc.edu/~wgscott/xtal/wiki/index.php/Stand-Alone_Coot

Good luck.

Bill




William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer Laboratories
University of California at Santa Cruz
Santa Cruz, California 95064
USA
 


Re: [COOT] Symbol not found: _iconv

2013-09-20 Thread Daniele de Sanctis
Hi Bill,

the stand-alone installation worked perfectly and runs smoothly.

thanks for your help

Daniele


On Fri, Sep 20, 2013 at 10:41 PM, William G. Scott wgsc...@ucsc.edu wrote:


 On Sep 20, 2013, at 6:54 AM, Daniele de Sanctis de.sanct...@gmail.com
 wrote:

  I already tried everything I found on the web (Reinstall OS, Repair disk
  etc). Thanks in advance for your help
 
  Daniele

 Hi Daniele:

 This is usually due to setting

 $DYLD_LIBRARY_PATH

 which is best avoided.  I think the ccp4 shell initialization scripts do
 this still.

 If /Applications/coot.app  requires that, it is broken.

 Before doing anything radical like reinstalling OS X, unsetting
 $DYLD_LIBRARY_PATH is at least worth a try, i.e.,

 export DYLD_LIBRARY_PATH=

 on bash or zsh, or

 unsetenv DYLD_LIBRARY_PATH

 on tcsh should do it.

 Also, you could try installing coot from here, as a control (or an
 alternative):

 http://scottlab.ucsc.edu/~wgscott/xtal/wiki/index.php/Stand-Alone_Coot

 Good luck.

 Bill




 William G. Scott
 Professor
 Department of Chemistry and Biochemistry
 and The Center for the Molecular Biology of RNA
 228 Sinsheimer Laboratories
 University of California at Santa Cruz
 Santa Cruz, California 95064
 USA





-- 
ἀρετή
---
Daniele de Sanctis, PhD

Structural Biology Group
ESRF, Grenoble, France
Tel 33 (0)4 76 88 2869