Previously-functional Octave software routine now mysteriously failing - Please help!
Hello. I just tried performing a correlation matrix calculation with Cygwin's Octave software (having successfully performed this calculation previously on other similar data sets) using the following commands within Cygwin: *(start of commands)* [vansc@LAPTOP-OHN2RCVM ~/PKG_domB_CHESCA_analysis_-_apo-cG-cA-RpcG-RpcA_4_Rp-ligs_manu_-_Jul_2023]$ octave GNU Octave, version 5.2.0 Copyright (C) 2020 John W. Eaton and others. This is free software; see the source code for copying conditions. There is ABSOLUTELY NO WARRANTY; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. For details, type 'warranty'. Octave was configured for "x86_64-pc-cygwin". Additional information about Octave is available at https://www.octave.org. Please contribute if you find this software useful. For more information, visit https://www.octave.org/get-involved.html Read https://www.octave.org/bugs.html to learn how to submit bug reports. For information about changes from previous versions, type 'news'. octave:1> load dm octave:2> cdmt = cor(dm.') octave:3> save dm.octave *(end of commands)* However, when I tried executing the "cdmt = cor(dm.')" command, I got the following error message: octave:2> cdmt = cor(dm.') error: 'cor' undefined near line 1 column 8 octave:2> For reference, I have attached a copy of the input "dm" matrix data file that I was trying to use in the calculations within Octave (see attached file). Do you have any idea what is going on here, and if there is a way to fix it (or work around it)?? dm Description: Binary data -- Problem reports: https://cygwin.com/problems.html FAQ: https://cygwin.com/faq/ Documentation:https://cygwin.com/docs.html Unsubscribe info: https://cygwin.com/ml/#unsubscribe-simple
Error encountered in Octave software - Please help!!
Hello. I just tried performing an analysis in the Octave software (GNU Octave, version 5.2.0), using the attached "dm" input file, and the following commands: load dm cdmt = cor(dm.') However, I encountered the following error message: error: 'cor' undefined near line 1 column 8 What is going on here?? dm Description: Binary data -- Problem reports: https://cygwin.com/problems.html FAQ: https://cygwin.com/faq/ Documentation:https://cygwin.com/docs.html Unsubscribe info: https://cygwin.com/ml/#unsubscribe-simple
Previously-functional gawk script now failing to execute - PLEASE HELP!!!
Hello. I just tried executing an old, previously-functional awk script using a version of gawk that I had downloaded last year, and a command of the following format (as recommended in a previous communication with the Cygwin mailing list): gawk -vRS="\r\n" -f data_collect_e_-_FF_4-state.awk but this time, the script failed to execute!! Upon closer examination, the script appears to be failing after successfully reading the first line of data from the input data file, even though the input file has NOT been modified since it was last used. (I should point out that while the files were copied over from my old computer, another awk script execution that I had attempted recently with older files worked fine!) (For reference, I have attached copies of the script and input files.) What the heck is going on with this software, and is there a way to fix it?! 224 0.595851431 0.09369783 225 0.889062608 0.033480286 226 0.835640914 0.024667245 228 0.926425963 0.100830335 229 1.647598528 0.053075286 230 1.342667163 0.049740591 231 1.23487811 0.303661798 232 0.918372444 0.201229278 233 1.073620187 0.038863171 234 1.282736478 0.092083566 237 1.198194998 0.061451225 238 1.517388582 0.183405758 239 0.777250185 0.042951855 240 1.442106405 0.071534566 242 1.127683833 0.180393161 243 0.75826546 0.10362625 244 0.806582369 0.053810549 245 0.782472863 0.089712654 246 0.7665594 0.063004719 247 1.133027476 0.116433654 248 0.228653463 0.054674445 250 1.03832007 0.057555951 251 0.207643515 0.045497989 252 0.89097942 0.065711892 253 1.382205043 0.041019712 254 1.624161735 0.097996896 255 0.102011133 0.017824426 257 0.243916847 0.030898216 258 1.401842211 0.167043419 259 1.367403732 0.089365097 260 1.011543148 0.241393784 261 0.331122492 0.084430871 262 1.247481409 0.012064997 263 0.164144595 0.015874666 264 0.29124209 0.023159954 265 1.155980147 0.007664518 267 1.327231572 0.088667225 269 1.630417096 0.091432252 272 0.837876582 0.088357396 276 0.126347248 0.021352854 278 0.281248041 0.04460507 279 1.507370692 0.055864662 280 0.099307529 0.023337928 282 0.078283134 0.015679097 285 1.396978738 0.041014414 286 1.639489181 0.021233884 287 1.358795349 0.166693354 290 1.034468946 0.071941536 291 1.042912979 0.161347016 292 1.243638613 0.186114384 294 1.465291389 0.080129079 295 1.498983157 0.261019123 297 1.020960822 0.039127181 298 1.014076358 0.055905146 299 0.10474365 0.025701761 300 1.164509327 0.06490821 301 1.581053193 0.117554464 302 1.198070393 0.279390802 304 1.030638676 0.098787267 306 1.892887325 0.148397402 307 1.180718504 0.269259715 308 1.250687158 0.220505404 309 1.389652687 0.061317639 310 1.071337559 0.071155291 311 0.655741784 0.083834781 312 0.757954775 0.06606795 315 1.861485087 0.302438971 316 1.543650517 0.131453064 317 0.590790541 0.17252546 318 1.360237347 0.017090096 319 0.092471202 0.03160355 322 0.160293668 0.018528699 323 1.498177719 0.063140897 324 1.33747325 0.077138118 325 1.135054625 0.14033561 326 0.106286087 0.010054509 327 0.172350731 0.062090642 332 1.599736857 0.07364121 333 0.719466407 0.104815196 334 0.95050495 0.042289463 335 0.950136142 0.102065088 337 0.930073299 0.164582827 338 0.931813131 0.083700864 339 0.797003512 0.019929439 340 0.948011214 0.025551098 341 1.158923159 0.115968704 342 1.151928768 0.090588751 343 1.558238511 0.070125811 345 1.78478822 0.203931487 346 1.184805052 0.015907815 347 0.918694163 0.016359047 348 0.334625526 0.081083201 349 1.330240541 0.108204132 350 1.23117168 0.128820577 353 0.822391221 0.060853522 354 0.84578441 0.133596858 data_collect_e_-_FF_4-state.awk Description: Binary data 224 0.509749968 0.177160603 225 0.558302662 0.133600275 226 0.691840552 0.051067741 227 1.233597604 0.283456681 228 0.421856797 0.148593149 229 0.718569048 0.172281526 230 0.873414173 0.141360943 232 0.814583694 0.116116109 233 0.545530204 0.10546754 234 0.99700609 0.169893273 237 1.147039778 0.248435675 238 1.212524735 0.136625425 239 0.815957312 0.154361412 240 1.002183096 0.097622672 242 0.685532137 0.195614404 243 0.690542903 0.177536237 244 1.067802596 0.299976054 245 0.611368407 0.087569393 246 1.294782866 0.320160689 247 1.355992615 0.162978753 249 0.992940868 0.202092716 250 0.837372727 0.104691616 251 0.545193505 0.129523309 252 0.751120079 0.141558128 258 1.596453745 0.293675409 259 0.790301838 0.126762602 260 0.968986106 0.098652785 261 0.842054028 0.073642471 262 1.152477734 0.101408622 265 1.139992142 0.098671518 266 1.338325639 0.216312478 267 1.463659157 0.236418172 268 0.927751272 0.123255266 270 0.86399925 0.138745433 272 0.520219938 0.170853123 278 0.704652944 0.09522493 279 1.890656381 0.499643642 280 0.398963117 0.118476991 284 0.122517329 0.049364492 285 1.134970966 0.106429413 286 1.176698565 0.201348106 287 1.07703454 0.157882271 288 0.969053608 0.147946755 290 0.634496025 0.186587724 291 0.990315215 0.116076617 294 1.315796916 0.222188321 295 1.241466428 0.161521586 296 1.060798921 0.087565525 297 1.331018926 0.110648457 298 1.213718667 0.335101144 300 1.0742
Previously-functional gawk script now failing to execute - PLEASE HELP!!!
Hello. I just tried executing an old, previously-functional awk script using a version of gawk that I had downloaded last year, and a command of the following format (as recommended in a previous communication with the Cygwin mailing list): gawk -vRS="\r\n" -f data_collect_e_-_FF_4-state.awk but this time, the script failed to execute!! Upon closer examination, the script appears to be failing after successfully reading the first line of data from the input data file, even though the input file has NOT been modified since it was last used. (I should point out that while the files were copied over from my old computer, another awk script execution that I had attempted recently with older files worked fine!) WHAT THE HECK IS GOING ON WITH THIS SOFTWARE?! -- Problem reports: https://cygwin.com/problems.html FAQ: https://cygwin.com/faq/ Documentation:https://cygwin.com/docs.html Unsubscribe info: https://cygwin.com/ml/#unsubscribe-simple
Re: Problem with output from gawk software in recent Cygwin installation
Just out of curiosity: Could this "" issue be something new for
Windows 10? I ask because I don't recall having this issue with my old
Windows 7 computer.
Bryan
On Tue, Jul 28, 2020 at 12:06 AM Brian Inglis <
brian.ing...@systematicsw.ab.ca> wrote:
> On 2020-07-27 15:58, Bryan VanSchouwen wrote:
> > On Mon, Jul 27, 2020 at 4:20 PM Brian Inglis wrote:
> >> On 2020-07-27 11:50, Michel LaBarre wrote:
> >>> On July 27, 2020 12:52 PM, Eliot Moss wrote:
> On 7/27/2020 11:47 AM, Bryan VanSchouwen wrote:
> > I just tried executing an awk script using the most recent version
> > of gawk, but the output did not turn out the way that it was supposed
> > to.
> > This script uses the following command to print the output data to
> > the output file:
> > print(cai[i], rpi[i], i) >
> > "Fit_Height_correln_plot_-_cPuMP_vs_2NH2-cPuMP.dat"
> > and previously, this command always printed the values of the three
> > variables on a single line, separated by spaces; however, now the
> > gawk software is automatically adding hard-returns between the
> > values, resulting in the three values being printed on separate lines
> > within the data file.
> > What is going on here, and how do I permanently make it stop??
>
> >>> Here's a wondering: Could it have to do with line endings? If Windows
> >>> CRLF is getting in there, then the variables might get a CR in them,
> >>> which might do weird things. This assumes those are string variables,
> >>> not numeric.
>
> >> Better yet, how about an example using manifest constants in a one line
> >> sample to eliminate impact of arrays or changes in input data as in:
> gawk
> >> 'BEGIN {print(1,2,3)}' or gawk 'BEGIN {print(1,2,3) > "xxx.txt"}'>
> > No problem with awk or gawk:
> > $ for ((i = 0; i < 10; ++i))
> > do
> > printf "%d %d %d %d\n" $((i+1)) $((i+2)) $((i+3)) $((i+4))
> > done > test.txt
> > $ awk '{print($1, $2, $3)}' test.txt
> > 1 2 3
> > 2 3 4
> > 3 4 5
> > 4 5 6
> > 5 6 7
> > 6 7 8
> > 7 8 9
> > 8 9 10
> > 9 10 11
> > 10 11 12
> > So the issue appears to be with your command line, script, or input data
> > file: please show the command line used to execute the script, attach
> the
> > complete awk script, and input data file for diagnosis, or selections of
> the
> > latter piped through or output using cat -A to show control characters.
> > Here they are (attached). The script was executed with the following
> > command:> gawk -f peak_intensity_correln_plot_compile.awk
> Input files have \r\n line terminators and those
> are
> carried thru at the ends of the string fields:
>
> $ gawk -f peak_intensity_correln_plot_compile.awk
> $ file *cPuMP*.dat
> 2NH2-cPuMP_nh_-_pk_Fit_Height_data.dat:ASCII text, with CRLF
> line
> terminators
> cPuMP_nh_-_pk_Fit_Height_data.dat: ASCII text, with CRLF
> line
> terminators
> Fit_Height_correln_plot_-_cPuMP_vs_2NH2-cPuMP.dat: ASCII text, with CR, LF
> line
> terminators
> $ cat -A Fit_Height_correln_plot_-_cPuMP_vs_2NH2-cPuMP.dat | head
> 1571697^M 1716833^M 224$
> 2672863^M 2894992^M 225$
> 2184902^M 9710015^M 226$
> 4393362^M 4095908^M 227$
> 3828609^M 4218978^M 229$
> 6285045^M 4008320^M 233$
> 3936959^M 4104667^M 234$
> 1698322^M 1942553^M 237$
> 4144791^M 4346435^M 238$
> 2546328^M 2804338^M 239$
>
> You could change your input line terminators to "\r\n" e.g. option
> -vRS="\r\n",
> insert '{ sub( /\r$/, ""); before each 'split(x, s, " ")', convert your
> input
> fields from strings to numbers by adding zero i.e. cai[i] += 0; rpi[i] +=
> 0; or
> use belts, braces, and suspenders with all three, e.g.
>
> $ gawk -vRS="\r\n" -f peak_intensity_correln_plot_compile.awk
> $ file *cPuMP*.dat
> 2NH2-cPuMP_nh_-_pk_Fit_Height_data.dat:ASCII text, with CRLF
> line
> terminators
> cPuMP_nh_-_pk_Fit_Height_data.dat: ASCII text, with CRLF
> line
> terminators
> Fit_Height_correln_plot_-_cPuMP_vs_2NH2-cPuMP.dat: ASCII text
> $ cat -A Fit_Height_correln_plot_-_cPuMP_vs_2NH2-cPuMP.dat | head
> 1571697 1716833 224$
> 2672863 2894992 225$
> 2184902 9710015 226$
> 4393362 4095908 227$
> 3828609 4218978 229$
> 6285045 4008320 233$
> 3936959 4104667 234$
> 1698322 1942553 237$
> 4144791 4346435 238$
> 2546328 2804338 239$
>
> --
> Take care. Thanks, Brian Inglis, Calgary, Alberta, Canada
>
> This email may be disturbing to some readers as it contains
> too much technical detail. Reader discretion is advised.
> [Data in IEC units and prefixes, physical quantities in SI.]
> --
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Problem with output from gawk software in recent Cygwin installation
Hello. I just tried executing an awk script using the most recent version of gawk, but the output did not turn out the way that it was supposed to. This script uses the following command to print the output data to the output file: print(cai[i], rpi[i], i) > "Fit_Height_correln_plot_-_cPuMP_vs_2NH2-cPuMP.dat" and previously, this command always printed the values of the three variables on a single line, separated by spaces; however, now the gawk software is automatically adding hard-returns between the values, resulting in the three values being printed on separate lines within the data file. What is going on here, and how do I permanently make it stop?? -- Problem reports: https://cygwin.com/problems.html FAQ: https://cygwin.com/faq/ Documentation:https://cygwin.com/docs.html Unsubscribe info: https://cygwin.com/ml/#unsubscribe-simple
Problem with "xmgrace" graphing software in recent Cygwin installation
Hello. I recently installed a copy of the Cygwin software package on my new Windows 10 laptop. However, whenever I try to access the "xmgrace" graphing software (by entering the command "xmgrace &" in the xterm command shell, as I did on my old Windows 7 laptop), I get the following error message: [vansc@LAPTOP-OHN2RCVM ~]$ xmgrace & [1] 1183 [vansc@LAPTOP-OHN2RCVM ~]$ --> Broken or incomplete installation - read the FAQ! [1]Exit 1xmgrace [vansc@LAPTOP-OHN2RCVM ~]$ I tried reading the FAQ, but it was unhelpful for this particular issue. Does anyone have any ideas about why this might be happening?? Also, if it is an incomplete installation, then does anyone know what set of Cygwin utilities I need to install to obtain a fully-functioning copy of the "xmgrace" graphing software? -- Problem reports: https://cygwin.com/problems.html FAQ: https://cygwin.com/faq/ Documentation:https://cygwin.com/docs.html Unsubscribe info: https://cygwin.com/ml/#unsubscribe-simple
