[cytoscape/cytoscape-impl] a0b99a: CYTOSCAPE-13083 Catch exception in ding caused by ...

2023-06-29 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/release/3.10.1
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: a0b99a5396fda32278522b0887b77f14f5f28494
  
https://github.com/cytoscape/cytoscape-impl/commit/a0b99a5396fda32278522b0887b77f14f5f28494
  Author: Mike Kucera 
  Date:   2023-06-28 (Wed, 28 Jun 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingNetworkViewFactory.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingRenderingEngineFactory.java
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMainPanel.java

  Log Message:
  ---
  CYTOSCAPE-13083 Catch exception in ding caused by race condition.


  Commit: c2f3bfdf691612ab51017076bf8d8477f3d387f4
  
https://github.com/cytoscape/cytoscape-impl/commit/c2f3bfdf691612ab51017076bf8d8477f3d387f4
  Author: Mike Kucera 
  Date:   2023-06-28 (Wed, 28 Jun 2023)

  Changed paths:
M 
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMediator.java

  Log Message:
  ---
  CYTOSCAPE-13083 Catch exception in ding caused by race condition, again


Compare: 
https://github.com/cytoscape/cytoscape-impl/compare/ef34ff51c410...c2f3bfdf6916

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[PathwayCommons/factoid] b6fbb8: Declare a named complex entity type.

2023-06-29 Thread 'Jeffrey' via cytoscape-cvs
  Branch: refs/heads/unstable
  Home:   https://github.com/PathwayCommons/factoid
  Commit: b6fbb8ac1da97d97e1163296f5a7979577a26780
  
https://github.com/PathwayCommons/factoid/commit/b6fbb8ac1da97d97e1163296f5a7979577a26780
  Author: Jeffrey Wong 
  Date:   2023-06-19 (Mon, 19 Jun 2023)

  Changed paths:
M src/model/element/entity-type.js

  Log Message:
  ---
  Declare a named complex entity type.


  Commit: e7a3694af004cf3ab91d28b7cd6aeeaefd2c082f
  
https://github.com/PathwayCommons/factoid/commit/e7a3694af004cf3ab91d28b7cd6aeeaefd2c082f
  Author: Jeffrey Wong 
  Date:   2023-06-19 (Mon, 19 Jun 2023)

  Changed paths:
M src/client/components/element-info/entity-assoc-display.js

  Log Message:
  ---
  Allow gene/products to have a summary; display named complex using protein 
template


  Commit: e8d7e9b44d6fa4fde8c363a1bc5dcb13c40a041f
  
https://github.com/PathwayCommons/factoid/commit/e8d7e9b44d6fa4fde8c363a1bc5dcb13c40a041f
  Author: Jeffrey Wong 
  Date:   2023-06-27 (Tue, 27 Jun 2023)

  Changed paths:
M src/model/element/entity.js

  Log Message:
  ---
  Distinguish complex, namedComplex and other with specific BioPAX template 
attributes.


  Commit: 35775eb6f08b5d85e0aa83c698806054bc8bbe70
  
https://github.com/PathwayCommons/factoid/commit/35775eb6f08b5d85e0aa83c698806054bc8bbe70
  Author: Jeffrey Wong 
  Date:   2023-06-27 (Tue, 27 Jun 2023)

  Changed paths:
M src/client/components/element-info/entity-info.js

  Log Message:
  ---
  Remove unused variables added for #1183


  Commit: ab0291ef2a6fdc15b1dd055bcc980bfa4e7e92f2
  
https://github.com/PathwayCommons/factoid/commit/ab0291ef2a6fdc15b1dd055bcc980bfa4e7e92f2
  Author: Jeffrey Wong 
  Date:   2023-06-27 (Tue, 27 Jun 2023)

  Changed paths:
M src/client/components/element-info/entity-info.js

  Log Message:
  ---
  linting corrections.


  Commit: 683af832aed2f9d6fbb041b939d41ddad40d1c67
  
https://github.com/PathwayCommons/factoid/commit/683af832aed2f9d6fbb041b939d41ddad40d1c67
  Author: Jeffrey Wong 
  Date:   2023-06-28 (Wed, 28 Jun 2023)

  Changed paths:
M src/model/element/entity.js

  Log Message:
  ---
  Convert a namedComplex to a complex for BioPAX template.


  Commit: efef1d34ce511145a60f67e34c22eb0228242b65
  
https://github.com/PathwayCommons/factoid/commit/efef1d34ce511145a60f67e34c22eb0228242b65
  Author: Jeffrey Wong 
  Date:   2023-06-28 (Wed, 28 Jun 2023)

  Changed paths:
M src/model/element/entity.js

  Log Message:
  ---
  Not necessary to set empty components list.


  Commit: c7052d5a95388c092bf6c0b6920fc0b08b886153
  
https://github.com/PathwayCommons/factoid/commit/c7052d5a95388c092bf6c0b6920fc0b08b886153
  Author: Jeffrey 
  Date:   2023-06-29 (Thu, 29 Jun 2023)

  Changed paths:
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/model/element/entity-type.js
M src/model/element/entity.js

  Log Message:
  ---
  Merge pull request #1187 from PathwayCommons/iss1181_named-complex

Famplex: Named complex


Compare: 
https://github.com/PathwayCommons/factoid/compare/f9bc6740bdb7...c7052d5a9538

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