[cytoscape/cytoscape-impl] 3d89fe: CYTOSCAPE-13079 Fix NPE from Label Position discre...

2023-12-12 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/release/3.10.2
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 3d89fe0d32086a72bdda42e50244dbffdf9ee727
  
https://github.com/cytoscape/cytoscape-impl/commit/3d89fe0d32086a72bdda42e50244dbffdf9ee727
  Author: Mike Kucera 
  Date:   2023-12-12 (Tue, 12 Dec 2023)

  Changed paths:
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ObjectPlacerGraphic.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ObjectPositionCellRenderer.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ObjectPositionIcon.java
M 
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/EdgeBendCellRenderer.java

  Log Message:
  ---
  CYTOSCAPE-13079 Fix NPE from Label Position discreet mapping icon.


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[cytoscape/cytoscape-impl] 465541: Merge pull request #49 from mesvam/patch-1

2023-12-12 Thread 'Mike Kucera' via cytoscape-cvs
  Branch: refs/heads/release/3.10.2
  Home:   https://github.com/cytoscape/cytoscape-impl
  Commit: 46554154f44988de296b164da52b70bd9d52d900
  
https://github.com/cytoscape/cytoscape-impl/commit/46554154f44988de296b164da52b70bd9d52d900
  Author: Scooter Morris 
  Date:   2023-12-11 (Mon, 11 Dec 2023)

  Changed paths:
M 
layout-cytoscape-impl/src/main/java/csapps/layout/algorithms/bioLayout/BioLayoutFRAlgorithmTask.java

  Log Message:
  ---
  Merge pull request #49 from mesvam/patch-1

Fix wrong attractive force in Edge-weighted Force directed layout


  Commit: 247c5893e28b82881ecce146fe2d72880f13d45e
  
https://github.com/cytoscape/cytoscape-impl/commit/247c5893e28b82881ecce146fe2d72880f13d45e
  Author: yihangx 
  Date:   2023-12-11 (Mon, 11 Dec 2023)

  Changed paths:
M app-impl/src/main/java/org/cytoscape/app/internal/task/AppManagerTask.java

  Log Message:
  ---
  Fixed CYTOSCAPE-13103


  Commit: 1eafa1379cc6f7ed304732fed04cfd45f826ed42
  
https://github.com/cytoscape/cytoscape-impl/commit/1eafa1379cc6f7ed304732fed04cfd45f826ed42
  Author: yihangx 
  Date:   2023-12-11 (Mon, 11 Dec 2023)

  Changed paths:
M app-impl/src/main/resources/AppManager/AppManager.html

  Log Message:
  ---
  Merge branch 'develop' of github.com:cytoscape/cytoscape-impl into develop


  Commit: 7f4a26a1fb1711963474ff763ccdb110999014ac
  
https://github.com/cytoscape/cytoscape-impl/commit/7f4a26a1fb1711963474ff763ccdb110999014ac
  Author: yihangx 
  Date:   2023-12-11 (Mon, 11 Dec 2023)

  Changed paths:
M 
app-impl/src/main/java/org/cytoscape/app/internal/action/UpdateNotificationAction.java

  Log Message:
  ---
  Fixed CYTOSCAPE-13103


  Commit: fdfd2933e7bba79111e6d34cc3cdab7faee3e0ed
  
https://github.com/cytoscape/cytoscape-impl/commit/fdfd2933e7bba79111e6d34cc3cdab7faee3e0ed
  Author: Scooter Morris 
  Date:   2023-12-11 (Mon, 11 Dec 2023)

  Changed paths:
M 
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/CyActivator.java
A 
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/RotateTask.java
A 
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/RotateTaskFactory.java
A 
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/ScaleTask.java
A 
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/ScaleTaskFactory.java

  Log Message:
  ---
  Implementation of commands for rotate and scale.  CYTOSCAPE-13105


  Commit: 5584232a097472cf3f3d629140accff222c55bb4
  
https://github.com/cytoscape/cytoscape-impl/commit/5584232a097472cf3f3d629140accff222c55bb4
  Author: Scooter Morris 
  Date:   2023-12-11 (Mon, 11 Dec 2023)

  Changed paths:
M 
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/tasks/ScaleTask.java

  Log Message:
  ---
  Don't use pow to adjust the scale -- just pass the value along directly. 
CYTOSCAPE-13105


  Commit: 4dcbedb171b4142e5e253deeb3a4e57dc315f17b
  
https://github.com/cytoscape/cytoscape-impl/commit/4dcbedb171b4142e5e253deeb3a4e57dc315f17b
  Author: Mike Kucera 
  Date:   2023-12-11 (Mon, 11 Dec 2023)

  Changed paths:
M 
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/charts/AbstractChart.java

  Log Message:
  ---
  CYTOSCAPE-13111 Avoid NPE from chart when column contains error equation


  Commit: 2a91f480e157e530f938f389382e7cc5ffa93173
  
https://github.com/cytoscape/cytoscape-impl/commit/2a91f480e157e530f938f389382e7cc5ffa93173
  Author: Christian Lopes 
  Date:   2023-12-11 (Mon, 11 Dec 2023)

  Changed paths:
M 
model-impl/impl/src/main/java/org/cytoscape/model/internal/CyNetworkTableManagerImpl.java
M 
session-impl/src/main/java/org/cytoscape/session/internal/CySessionManagerImpl.java

  Log Message:
  ---
  Disposes unregistered networks (that have the SESSION_FILE SavePolicy) when 
closing a session -- CYTOSCAPE-13112


  Commit: 6482b4677d5f6fd3cf38699bfa74d0f4933fa205
  
https://github.com/cytoscape/cytoscape-impl/commit/6482b4677d5f6fd3cf38699bfa74d0f4933fa205
  Author: Scooter Morris 
  Date:   2023-12-11 (Mon, 11 Dec 2023)

  Changed paths:
M 
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java

  Log Message:
  ---
  Attempted fix for CSD-1012 -- make sure to select the proper property
sheet before we createa ll of the visual property shett items


  Commit: 00281bd6cfa42c32551aecbb8cdaa7be8659f195
  
https://github.com/cytoscape/cytoscape-impl/commit/00281bd6cfa42c32551aecbb8cdaa7be8659f195
  Author: Scooter Morris 
  Date:   2023-12-11 (Mon, 11 Dec 2023)

  Changed paths:
M 
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/SVGWriter.java

  Log Message:
  ---
  Partial fix for CSD-999.  The SVG problem was caused by writing the date
in the  line in 16-bit Unicode.  To avoid that, we simply set