[cytoscape/cytoscape-admin-scripts] dea30e: set max version to 17 since it is the only safe on...
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-admin-scripts Commit: dea30e886d6c8303dbee36ec9dc23b5eb17b2bd0 https://github.com/cytoscape/cytoscape-admin-scripts/commit/dea30e886d6c8303dbee36ec9dc23b5eb17b2bd0 Author: Chris Churas Date: 2024-02-14 (Wed, 14 Feb 2024) Changed paths: M system-checker/windows.bat Log Message: --- set max version to 17 since it is the only safe one to use. also updated java 17 download link. fix for CYTOSCAPE-13130 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-admin-scripts/push/refs/heads/master/19a8c1-dea30e%40github.com.
[cytoscape/cytoscape-admin-scripts] 19a8c1: updated link for java download to version 17. part...
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-admin-scripts Commit: 19a8c11989b30b6a463ef48a7a91baf15e74412e https://github.com/cytoscape/cytoscape-admin-scripts/commit/19a8c11989b30b6a463ef48a7a91baf15e74412e Author: Chris Churas Date: 2024-02-14 (Wed, 14 Feb 2024) Changed paths: M system-checker/linux.sh Log Message: --- updated link for java download to version 17. partial fix for CYTOSCAPE-13130 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-admin-scripts/push/refs/heads/master/1f6144-19a8c1%40github.com.
[cytoscape/cytoscape-admin-scripts] 1f6144: updated to let user know they need java 17 instead...
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-admin-scripts Commit: 1f614456cd8f7cae83ee5b92f821d0cb175f70ba https://github.com/cytoscape/cytoscape-admin-scripts/commit/1f614456cd8f7cae83ee5b92f821d0cb175f70ba Author: Chris Churas Date: 2024-02-14 (Wed, 14 Feb 2024) Changed paths: M system-checker/mac.sh Log Message: --- updated to let user know they need java 17 instead of 11. partial fix for CYTOSCAPE-13130 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-admin-scripts/push/refs/heads/master/1b33ff-1f6144%40github.com.
[cytoscape/cytoscape.js] c24c50: :bug: Fix loop on collinear points
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: c24c50a6a806f9d1fd9a522ebcad9e79944fec56 https://github.com/cytoscape/cytoscape.js/commit/c24c50a6a806f9d1fd9a522ebcad9e79944fec56 Author: EliotRagueneau Date: 2024-01-31 (Wed, 31 Jan 2024) Changed paths: M src/round.js Log Message: --- :bug: Fix loop on collinear points Commit: 70262b95e4f8b484fff324a13da0fcd80eb6030d https://github.com/cytoscape/cytoscape.js/commit/70262b95e4f8b484fff324a13da0fcd80eb6030d Author: EliotRagueneau Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M src/collection/dimensions/bounds.js Log Message: --- :bug: Fix disappearing edge on zooming because wrong bounding box Commit: e6b675e58145ce2a6993bfba79e7623786c02398 https://github.com/cytoscape/cytoscape.js/commit/e6b675e58145ce2a6993bfba79e7623786c02398 Author: EliotRagueneau Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M src/extensions/renderer/base/coord-ele-math/edge-control-points.js M src/extensions/renderer/canvas/drawing-edges.js M src/round.js M src/style/properties.js Log Message: --- :zap: Cache edge round corners + include new strategy for acute corners Commit: afd68be8daf2128c72a477fe7b77ebb7927ca4e2 https://github.com/cytoscape/cytoscape.js/commit/afd68be8daf2128c72a477fe7b77ebb7927ca4e2 Author: EliotRagueneau Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M src/round.js Log Message: --- :zap: Use radius 0 instead of ignore flag to ignore round corner Commit: a82f06b7ad7ae0b807d93b3863e91b32a186b055 https://github.com/cytoscape/cytoscape.js/commit/a82f06b7ad7ae0b807d93b3863e91b32a186b055 Author: EliotRagueneau Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M documentation/md/style.md M src/extensions/renderer/base/coord-ele-math/edge-control-points.js M src/round.js M src/style/properties.js Log Message: --- :truck: Change `acute-corner-strategy` to `radius-type` + add documentation Commit: 1f7efaee0053f2bd98d1c141c871f65e0c17e8ab https://github.com/cytoscape/cytoscape.js/commit/1f7efaee0053f2bd98d1c141c871f65e0c17e8ab Author: EliotRagueneau Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M src/extensions/renderer/base/coord-ele-math/edge-control-points.js Log Message: --- :rotating_light: Fix lint Commit: fada8545a824a1048cc1b21e328acb7b381ff96d https://github.com/cytoscape/cytoscape.js/commit/fada8545a824a1048cc1b21e328acb7b381ff96d Author: Eliot Ragueneau <42945601+eliotraguen...@users.noreply.github.com> Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M documentation/css/style.css M documentation/md/getting-started.md M documentation/md/intro.md Log Message: --- Merge branch 'cytoscape:unstable' into border-radius Commit: 1ca5a71cd89839b547c4f28a7c5f1f41c082085c https://github.com/cytoscape/cytoscape.js/commit/1ca5a71cd89839b547c4f28a7c5f1f41c082085c Author: EliotRagueneau Date: 2024-02-02 (Fri, 02 Feb 2024) Changed paths: A documentation/demos/radius-types/code.js A documentation/demos/radius-types/cy-style.json A documentation/demos/radius-types/data.json A documentation/demos/radius-types/index.html A documentation/demos/radius-types/style.css M documentation/md/style.md Log Message: --- :memo: Add demo for radius type Commit: 33d3c7debb630b63bd1dace710db856fc9cbbbef https://github.com/cytoscape/cytoscape.js/commit/33d3c7debb630b63bd1dace710db856fc9cbbbef Author: EliotRagueneau Date: 2024-02-02 (Fri, 02 Feb 2024) Changed paths: M documentation/css/style.css M documentation/md/getting-started.md M documentation/md/intro.md Log Message: --- Merge remote-tracking branch 'origin/border-radius' into border-radius Commit: f45142794da18a49836032f8d2bd7b335f2254b9 https://github.com/cytoscape/cytoscape.js/commit/f45142794da18a49836032f8d2bd7b335f2254b9 Author: EliotRagueneau Date: 2024-02-13 (Tue, 13 Feb 2024) Changed paths: M documentation/demos/radius-types/index.html M documentation/docmaker.json A documentation/img/demos/radius-types.png Log Message: --- :memo: Add demo for radius type to demos list Commit: b81d341f1d74c940f7229883167f8de1564775dd https://github.com/cytoscape/cytoscape.js/commit/b81d341f1d74c940f7229883167f8de1564775dd Author: EliotRagueneau Date: 2024-02-14 (Wed, 14 Feb 2024) Changed paths: M src/round.js Log Message: --- :bug: Fix collinear points using previous coords Commit: 759ef49d3eeb5e52f5c624ccac45d0dad84ea600 https://github.com/cytoscape/cytoscape.js/commit/759ef49d3eeb5e52f5c624ccac45d0dad84ea600 Author: Max Franz Date: 2024-02-14 (Wed, 14 Feb 2024) Changed
[cytoscape/cytoscape-impl] f82607: Minor tweaks to: size of session panels; borders, ...
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: f8260754c692bb036113f613fae9fbd16bec74f9 https://github.com/cytoscape/cytoscape-impl/commit/f8260754c692bb036113f613fae9fbd16bec74f9 Author: Christian Lopes Date: 2024-02-14 (Wed, 14 Feb 2024) Changed paths: M swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java Log Message: --- Minor tweaks to: size of session panels; borders, gradients and preferred size of session lists -- CYTOSCAPE-13129 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/release/3.10.2/31cba0-f82607%40github.com.
[cytoscape/cytoscape-impl] e17651: CYTOSCAPE-13121 Make (default) more visible in lay...
Branch: refs/heads/release/3.10.2 Home: https://github.com/cytoscape/cytoscape-impl Commit: e17651cff1c7bcbd72648287c0572c43f5f6bd1c https://github.com/cytoscape/cytoscape-impl/commit/e17651cff1c7bcbd72648287c0572c43f5f6bd1c Author: Mike Kucera Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/LayoutSettingsDialog.java Log Message: --- CYTOSCAPE-13121 Make (default) more visible in layout settings dialog Commit: 6061da09d767623e4c765ac6aee4b4b8603a1c23 https://github.com/cytoscape/cytoscape-impl/commit/6061da09d767623e4c765ac6aee4b4b8603a1c23 Author: Scooter Morris Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLParser.java Log Message: --- Modified GMLParser to wrap whitespace around start and end list. Fixes CYTOSCAPE-13107 Commit: c70ea37f4268b3a56d717f472e82627df53b1ad5 https://github.com/cytoscape/cytoscape-impl/commit/c70ea37f4268b3a56d717f472e82627df53b1ad5 Author: Scooter Morris Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M linkout-impl/src/main/resources/linkout.props Log Message: --- OK, adjusted URI format. For some reason, the uniprot web site doesn't load using CyBrowser, so this will only work if you use the system browser. CYTOSCAPE-13104 Commit: b38f5866dbe74419bf16ac6eabfd8325f5c16193 https://github.com/cytoscape/cytoscape-impl/commit/b38f5866dbe74419bf16ac6eabfd8325f5c16193 Author: Scooter Morris Date: 2024-01-08 (Mon, 08 Jan 2024) Changed paths: M linkout-impl/src/main/resources/linkout.props Log Message: --- CYTOSCAPE-13104 -- just removed the gene: to do a more generic search Commit: 20cf9161147fb7d3f69d88a685c9be3df953706e https://github.com/cytoscape/cytoscape-impl/commit/20cf9161147fb7d3f69d88a685c9be3df953706e Author: Christian Lopes Date: 2024-01-11 (Thu, 11 Jan 2024) Changed paths: M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java M ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/VisualPropertyIconFactory.java M vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/IconCellRenderer.java Log Message: --- Fixes the icons for edge arrows on the VizMapper: incorrect proportions (e.g. CIRCLE, SQUARE), misalignments (HALF_TOP, HALF_BOTTOM), incorrect edge intersection (ARROWs). Commit: 1576051b0176e3883786b0d29175d4f16c33a678 https://github.com/cytoscape/cytoscape-impl/commit/1576051b0176e3883786b0d29175d4f16c33a678 Author: Mike Kucera Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M search2-impl/src/main/java/org/cytoscape/search/internal/index/CustomMultiFieldQueryParser.java Log Message: --- CYTOSCAPE-13113 allow leading wildcard in lucene search Commit: 20a25f79cbc810a757e5adffa7f189a48584549e https://github.com/cytoscape/cytoscape-impl/commit/20a25f79cbc810a757e5adffa7f189a48584549e Author: Mike Kucera Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/SwingTaskMonitor.java Log Message: --- CYTOSCAPE-13126 Move history.addMessage() off the EDT. Reformat code. Commit: fa24c1f32f31398cfe4fd120e5afd5e0fd3ef03f https://github.com/cytoscape/cytoscape-impl/commit/fa24c1f32f31398cfe4fd120e5afd5e0fd3ef03f Author: Mike Kucera Date: 2024-02-01 (Thu, 01 Feb 2024) Changed paths: M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/TaskHistory.java M work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/view/TaskHistoryWindow.java Log Message: --- CYTOSCAPE-13126 TaskHistory max size. TaskHistoryWindow debounce. Reformat code. Commit: 24895b04555744f9dbaa672244e750c47764119a https://github.com/cytoscape/cytoscape-impl/commit/24895b04555744f9dbaa672244e750c47764119a Author: Scooter Morris Date: 2024-02-05 (Mon, 05 Feb 2024) Changed paths: M group-impl/src/main/java/org/cytoscape/group/internal/CyActivator.java M group-impl/src/main/java/org/cytoscape/group/internal/view/NodeChangeListener.java Log Message: --- Possible fix for CYTOSCAPE-13125 We registered the SessionLoaded listener, which clears all of the maps and we added a NetworkViewAboutToBeDestroyed listener to remove the keys from the maps as the view goes away. Commit: d3b2afbbded887c6c24c2c081057f8aacce0d0a9 https://github.com/cytoscape/cytoscape-impl/commit/d3b2afbbded887c6c24c2c081057f8aacce0d0a9 Author: Christian Lopes Date: 2024-02-08 (Thu, 08 Feb 2024) Changed paths: M swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java M
