[PathwayCommons/factoid] 081742: AuthorProfiles: Provide error handling, fallback (...
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 081742857525371420174f70c5702bfc979ca992 https://github.com/PathwayCommons/factoid/commit/081742857525371420174f70c5702bfc979ca992 Author: metincansiper Date: 2021-01-05 (Tue, 05 Jan 2021) Changed paths: M src/server/routes/api/document/index.js Log Message: --- AuthorProfiles: Provide error handling, fallback (for orcid) #923 Commit: a1510669526ee0c99e90c9bd5a8d995730a9ba4c https://github.com/PathwayCommons/factoid/commit/a1510669526ee0c99e90c9bd5a8d995730a9ba4c Author: Max Franz Date: 2021-01-06 (Wed, 06 Jan 2021) Changed paths: M src/server/routes/api/document/index.js Log Message: --- Merge pull request #924 from PathwayCommons/author_profiles_error AuthorProfiles: Provide error handling, fallback Compare: https://github.com/PathwayCommons/factoid/compare/24b90ee3bffc...a1510669526e -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/24b90e-a15106%40github.com.
[cytoscape/cytoscape.js] f26e64: Use only https assets in tokyo-railways demo
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: f26e641ff428b20538b6fcc6671473a2a747a5f3 https://github.com/cytoscape/cytoscape.js/commit/f26e641ff428b20538b6fcc6671473a2a747a5f3 Author: Peeyush Kushwaha Date: 2020-12-27 (Sun, 27 Dec 2020) Changed paths: M documentation/demos/tokyo-railways/index.html Log Message: --- Use only https assets in tokyo-railways demo Firefox blocks loading of http scripts on https pages by default, resulting in a broken demo. See https://developer.mozilla.org/en-US/docs/Web/Security/Mixed_content#Types_of_mixed_content Commit: 74c40e049cc0be9c3078c924ec241b549b005c30 https://github.com/cytoscape/cytoscape.js/commit/74c40e049cc0be9c3078c924ec241b549b005c30 Author: Max Franz Date: 2021-01-04 (Mon, 04 Jan 2021) Changed paths: M documentation/demos/tokyo-railways/index.html Log Message: --- Merge pull request #2803 from peey/patch-1 Use only https assets in tokyo-railways demo Compare: https://github.com/cytoscape/cytoscape.js/compare/5860f1692a17...74c40e049cc0 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/5860f1-74c40e%40github.com.
[cytoscape/cytoscape.js] 6ccf47: replaced @namespace with @methodName
Branch: refs/heads/typescript Home: https://github.com/cytoscape/cytoscape.js Commit: 6ccf477ab9ac432f83d8ee14a1e10fbfb9902c28 https://github.com/cytoscape/cytoscape.js/commit/6ccf477ab9ac432f83d8ee14a1e10fbfb9902c28 Author: rahul799 Date: 2020-12-23 (Wed, 23 Dec 2020) Changed paths: M dist/ts-definations/types.d.ts M documentation/docmaker.json M documentation/generateDocs.js M src/animation.js M src/collection/class.js M src/collection/comparators.js M src/collection/compounds.js M src/collection/filter.js M src/collection/group.js M src/collection/iteration.js M src/collection/layout.js M src/collection/style.js M src/collection/traversing.js M src/core/add-remove.js M src/core/index.js M src/core/layout.js M src/core/notification.js M src/core/search.js M src/core/style.js M src/core/viewport.js M src/extensions/layout/index.js Log Message: --- replaced @namespace with @methodName Commit: a629825a89d98265b0dc35b477ec2735d55fb225 https://github.com/cytoscape/cytoscape.js/commit/a629825a89d98265b0dc35b477ec2735d55fb225 Author: Max Franz Date: 2020-12-29 (Tue, 29 Dec 2020) Changed paths: M documentation/docmaker.json M documentation/generateDocs.js M src/animation.js M src/collection/class.js M src/collection/comparators.js M src/collection/compounds.js M src/collection/filter.js M src/collection/group.js M src/collection/iteration.js M src/collection/layout.js M src/collection/style.js M src/collection/traversing.js M src/core/add-remove.js M src/core/index.js M src/core/layout.js M src/core/notification.js M src/core/search.js M src/core/style.js M src/core/viewport.js M src/extensions/layout/index.js Log Message: --- Merge pr/rahul799/2800 into typescript Compare: https://github.com/cytoscape/cytoscape.js/compare/816cb51c237b...a629825a89d9 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/typescript/816cb5-a62982%40github.com.
[cytoscape/cytoscape.js] 816cb5: Example changes for Rahul re. docs json discussion
Branch: refs/heads/typescript Home: https://github.com/cytoscape/cytoscape.js Commit: 816cb51c237b114fe170e8fe3207378362d67b0f https://github.com/cytoscape/cytoscape.js/commit/816cb51c237b114fe170e8fe3207378362d67b0f Author: Max Franz Date: 2020-12-24 (Thu, 24 Dec 2020) Changed paths: M documentation/docmaker.js M documentation/docmaker.json A documentation/fn-json/cy/remove.json Log Message: --- Example changes for Rahul re. docs json discussion -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/typescript/0ca3b7-816cb5%40github.com.
[PathwayCommons/factoid] 711b25: Add ORCID icon to set of custom icons
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 711b253f7f47820667987b07f8f40edd199bdb98 https://github.com/PathwayCommons/factoid/commit/711b253f7f47820667987b07f8f40edd199bdb98 Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: M src/styles/base.css M src/styles/custom-icons.css A src/styles/image/orcid-icon.svg Log Message: --- Add ORCID icon to set of custom icons Commit: 0e06b3a6444358195b1a92b90a2794832e2c232b https://github.com/PathwayCommons/factoid/commit/0e06b3a6444358195b1a92b90a2794832e2c232b Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: M src/server/routes/api/document/index.js Log Message: --- In PATCH `/api/document` `op=replace value=article`, fill author profiles Commit: 5e0da0727700ebc7b73b5e202e6f231e08b7a263 https://github.com/PathwayCommons/factoid/commit/5e0da0727700ebc7b73b5e202e6f231e08b7a263 Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: M src/client/components/editor/info-panel.js M src/styles/editor/editor.css Log Message: --- Update the author profile links to use comma separators and ORCID icons Commit: 39461a531185724686dc23766cf37b97a65bc159 https://github.com/PathwayCommons/factoid/commit/39461a531185724686dc23766cf37b97a65bc159 Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: M src/client/components/editor/submit.js M src/client/components/editor/title.js M src/client/components/request-form.js M src/client/components/tasks.js M src/styles/request-form.css Log Message: --- Improved in-editor title editing - Title editing is available only if unspecified at doc creation. - In place of the title is a link: "Set your article's title". - If only the title is missing (i.e. email and name are set), then only the title is available for editing. This simplifies the workflow for the email campaign. - If the name or email fields are empty, then those fields are also available for editing. The title then says "Set your article's title etc." - The submission popovers close properly with the 'Show me how' buttons - The form fields are now in the more traditional order: title, name, email Commit: c092cff69d01559d84e76d0fb26e25cb5c5639f1 https://github.com/PathwayCommons/factoid/commit/c092cff69d01559d84e76d0fb26e25cb5c5639f1 Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: A src/client/components/editor/credits.js M src/client/components/editor/index.js M src/styles/editor/editor.css Log Message: --- Add credits: Shows the name & ORCID link of the contributing author in the explore view Commit: 96ebfc8d2581192c0185aee975c370c0c82f2b65 https://github.com/PathwayCommons/factoid/commit/96ebfc8d2581192c0185aee975c370c0c82f2b65 Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: M src/client/components/document-management.js Log Message: --- The admin interface doesn't need to validate the inputs. They can be empty now. Commit: 24b90ee3bffcd74c5da3374d8acf99cbcacffb55 https://github.com/PathwayCommons/factoid/commit/24b90ee3bffcd74c5da3374d8acf99cbcacffb55 Author: Max Franz Date: 2020-12-22 (Tue, 22 Dec 2020) Changed paths: M src/client/components/document-management.js A src/client/components/editor/credits.js M src/client/components/editor/index.js M src/client/components/editor/info-panel.js M src/client/components/editor/submit.js M src/client/components/editor/title.js M src/client/components/request-form.js M src/client/components/tasks.js M src/server/routes/api/document/index.js M src/styles/base.css M src/styles/custom-icons.css M src/styles/editor/editor.css A src/styles/image/orcid-icon.svg M src/styles/request-form.css Log Message: --- Merge pull request #921 from PathwayCommons/post-hoc-titles-etc Post hoc titles etc Compare: https://github.com/PathwayCommons/factoid/compare/3fb0b53f2a94...24b90ee3bffc -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/3fb0b5-24b90e%40github.com.
[cytoscape/cytoscape.js] 0ca3b7: Types should go to the build dir for now
Branch: refs/heads/typescript Home: https://github.com/cytoscape/cytoscape.js Commit: 0ca3b7cec81bf2eef02f4ebfb8ecddc630d96f81 https://github.com/cytoscape/cytoscape.js/commit/0ca3b7cec81bf2eef02f4ebfb8ecddc630d96f81 Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: R dist/ts-definations/animation/types.d.ts R dist/ts-definations/collection/types.d.ts R dist/ts-definations/core/types.d.ts R dist/ts-definations/layout/types.d.ts R dist/ts-definations/types.d.ts M package.json Log Message: --- Types should go to the build dir for now -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/typescript/caa622-0ca3b7%40github.com.
[cytoscape/cytoscape.js] caa622: Remove generated files & add to gitignore
Branch: refs/heads/typescript Home: https://github.com/cytoscape/cytoscape.js Commit: caa6226d591ec4d834b7bfb27317fcb2839eacd2 https://github.com/cytoscape/cytoscape.js/commit/caa6226d591ec4d834b7bfb27317fcb2839eacd2 Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: M .gitignore R documentation/ast/animation_AST.json R documentation/ast/core_AST.json R documentation/ast/layout_AST.json R documentation/jsdocAST.json R documentation/jsdocAnnotations.json Log Message: --- Remove generated files & add to gitignore -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/typescript/414f50-caa622%40github.com.
[PathwayCommons/factoid] 711b25: Add ORCID icon to set of custom icons
Branch: refs/heads/post-hoc-titles-etc Home: https://github.com/PathwayCommons/factoid Commit: 711b253f7f47820667987b07f8f40edd199bdb98 https://github.com/PathwayCommons/factoid/commit/711b253f7f47820667987b07f8f40edd199bdb98 Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: M src/styles/base.css M src/styles/custom-icons.css A src/styles/image/orcid-icon.svg Log Message: --- Add ORCID icon to set of custom icons Commit: 0e06b3a6444358195b1a92b90a2794832e2c232b https://github.com/PathwayCommons/factoid/commit/0e06b3a6444358195b1a92b90a2794832e2c232b Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: M src/server/routes/api/document/index.js Log Message: --- In PATCH `/api/document` `op=replace value=article`, fill author profiles Commit: 5e0da0727700ebc7b73b5e202e6f231e08b7a263 https://github.com/PathwayCommons/factoid/commit/5e0da0727700ebc7b73b5e202e6f231e08b7a263 Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: M src/client/components/editor/info-panel.js M src/styles/editor/editor.css Log Message: --- Update the author profile links to use comma separators and ORCID icons Commit: 39461a531185724686dc23766cf37b97a65bc159 https://github.com/PathwayCommons/factoid/commit/39461a531185724686dc23766cf37b97a65bc159 Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: M src/client/components/editor/submit.js M src/client/components/editor/title.js M src/client/components/request-form.js M src/client/components/tasks.js M src/styles/request-form.css Log Message: --- Improved in-editor title editing - Title editing is available only if unspecified at doc creation. - In place of the title is a link: "Set your article's title". - If only the title is missing (i.e. email and name are set), then only the title is available for editing. This simplifies the workflow for the email campaign. - If the name or email fields are empty, then those fields are also available for editing. The title then says "Set your article's title etc." - The submission popovers close properly with the 'Show me how' buttons - The form fields are now in the more traditional order: title, name, email Commit: c092cff69d01559d84e76d0fb26e25cb5c5639f1 https://github.com/PathwayCommons/factoid/commit/c092cff69d01559d84e76d0fb26e25cb5c5639f1 Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: A src/client/components/editor/credits.js M src/client/components/editor/index.js M src/styles/editor/editor.css Log Message: --- Add credits: Shows the name & ORCID link of the contributing author in the explore view Commit: 96ebfc8d2581192c0185aee975c370c0c82f2b65 https://github.com/PathwayCommons/factoid/commit/96ebfc8d2581192c0185aee975c370c0c82f2b65 Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: M src/client/components/document-management.js Log Message: --- The admin interface doesn't need to validate the inputs. They can be empty now. Compare: https://github.com/PathwayCommons/factoid/compare/711b253f7f47%5E...96ebfc8d2581 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/post-hoc-titles-etc/00-96ebfc%40github.com.
[cytoscape/cytoscape.js] d15dfb: Add Global CTO Forum to the who-uses list
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: d15dfbfcf26b11530a267141a14cd53993b93898 https://github.com/cytoscape/cytoscape.js/commit/d15dfbfcf26b11530a267141a14cd53993b93898 Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: M documentation/md/intro.md Log Message: --- Add Global CTO Forum to the who-uses list -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/193c43-d15dfb%40github.com.
[cytoscape/cytoscape.js] 5860f1: Add Global CTO Forum to the who-uses list
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 5860f1692a177a4c5095e701135c4a17477633b6 https://github.com/cytoscape/cytoscape.js/commit/5860f1692a177a4c5095e701135c4a17477633b6 Author: Max Franz Date: 2020-12-21 (Mon, 21 Dec 2020) Changed paths: M documentation/md/intro.md Log Message: --- Add Global CTO Forum to the who-uses list -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/318c58-5860f1%40github.com.
[cytoscape/cytoscape.js] abb908: pipeline integrated
n Log Message: --- fixing travis Commit: 747490f40aaafe94304aeb5cee8b9dfd62fa0faa https://github.com/cytoscape/cytoscape.js/commit/747490f40aaafe94304aeb5cee8b9dfd62fa0faa Author: rahul799 Date: 2020-11-17 (Tue, 17 Nov 2020) Changed paths: M src/extensions/layout/index.js Log Message: --- fixed unused vars Commit: f39e9676af247538e1cf16e56503859c4b376632 https://github.com/cytoscape/cytoscape.js/commit/f39e9676af247538e1cf16e56503859c4b376632 Author: rahul799 Date: 2020-11-19 (Thu, 19 Nov 2020) Changed paths: M .gitignore A dist/ts-definations/animation/types.d.ts A dist/ts-definations/collection/types.d.ts A dist/ts-definations/core/types.d.ts A dist/ts-definations/layout/types.d.ts R documentation/AST/animation_AST.json R documentation/AST/core_AST.json R documentation/AST/layout_AST.json A documentation/ast/animation_AST.json A documentation/ast/core_AST.json A documentation/ast/layout_AST.json M documentation/generateAST.js M documentation/generateDocs.js M package.json R src/collection/out/types.d.ts R src/core/out/types.d.ts R src/extensions/layout/out/types.d.ts R src/out/types.d.ts Log Message: --- added ts to package.json + some cleanup Commit: ca6a26f8ef33b035acfc3f20313b1364d39d131b https://github.com/cytoscape/cytoscape.js/commit/ca6a26f8ef33b035acfc3f20313b1364d39d131b Author: rahul799 Date: 2020-11-19 (Thu, 19 Nov 2020) Changed paths: R documentation/generateAST.js M documentation/generateDocs.js M documentation/jsdocAnnotations.json M package.json Log Message: --- cleaning up package.json Commit: 1898f766d8695b98b08d0f248c490b1ccfa4e714 https://github.com/cytoscape/cytoscape.js/commit/1898f766d8695b98b08d0f248c490b1ccfa4e714 Author: rahul799 Date: 2020-11-25 (Wed, 25 Nov 2020) Changed paths: M documentation/generateDocs.js M src/collection/class.js M src/collection/comparators.js M src/collection/compounds.js M src/collection/filter.js M src/collection/group.js M src/collection/iteration.js M src/collection/layout.js M src/collection/style.js M src/collection/traversing.js M src/core/add-remove.js M src/core/index.js M src/core/layout.js M src/core/notification.js M src/core/search.js M src/core/style.js M src/core/viewport.js M src/extensions/layout/index.js Log Message: --- path added Commit: 9c487bdbdedb61319c63172133c9ce44dad193ee https://github.com/cytoscape/cytoscape.js/commit/9c487bdbdedb61319c63172133c9ce44dad193ee Author: rahul799 Date: 2020-11-25 (Wed, 25 Nov 2020) Changed paths: M src/animation.js Log Message: --- wrapping up path annotation Commit: d94fbe51625aa7b2f8b55a5682b7c212e73ae49f https://github.com/cytoscape/cytoscape.js/commit/d94fbe51625aa7b2f8b55a5682b7c212e73ae49f Author: rahul799 Date: 2020-12-15 (Tue, 15 Dec 2020) Changed paths: A dist/ts-definations/types.d.ts M documentation/docmaker.json M documentation/index.html M package.json Log Message: --- added a single type defination file Commit: 414f5076427e8ab01f0171a0beb49be1554dbdf2 https://github.com/cytoscape/cytoscape.js/commit/414f5076427e8ab01f0171a0beb49be1554dbdf2 Author: Max Franz Date: 2020-12-17 (Thu, 17 Dec 2020) Changed paths: M .gitignore R .size-snapshot.json A dist/ts-definations/animation/types.d.ts A dist/ts-definations/collection/types.d.ts A dist/ts-definations/core/types.d.ts A dist/ts-definations/layout/types.d.ts A dist/ts-definations/types.d.ts A documentation/ast/animation_AST.json A documentation/ast/core_AST.json A documentation/ast/layout_AST.json M documentation/docmaker.json A documentation/generateDocs.js M documentation/index.html R documentation/js/cytoscape.min.js A documentation/jsdocAST.json A documentation/jsdocAnnotations.json A documentation/md/ani/apply.md A documentation/md/ani/pause.md A documentation/md/ani/play.md A documentation/md/ani/progress.md A documentation/md/ani/promise.md A documentation/md/ani/reverse.md A documentation/md/ani/stop.md R documentation/md/animation/apply.md R documentation/md/animation/pause.md R documentation/md/animation/play.md R documentation/md/animation/progress.md R documentation/md/animation/promise.md R documentation/md/animation/reverse.md R documentation/md/animation/stop.md R documentation/md/core/add.md R documentation/md/core/animate.md R documentation/md/core/autolock.md R documentation/md/core/autoungrabify.md R documentation/md/core/autounselectify.md R documentation/md/core/batch.md R documentation/md/core/boxSelectionEnabled.md R documentation/md/co
[cytoscape/cytoscape.js] 318c58: Add another link to the blog post in the contribut...
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 318c58259f2725aa96e13001c908e7b3a0997d97 https://github.com/cytoscape/cytoscape.js/commit/318c58259f2725aa96e13001c908e7b3a0997d97 Author: Max Franz Date: 2020-12-16 (Wed, 16 Dec 2020) Changed paths: M .github/CONTRIBUTING.md Log Message: --- Add another link to the blog post in the contributing file -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/f4c572-318c58%40github.com.
[cytoscape/cytoscape.js] f4c572: Update md files re. contributions & gh discussions
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: f4c572a82ae8b62ad16c4627b4b473d3ff7a1fae https://github.com/cytoscape/cytoscape.js/commit/f4c572a82ae8b62ad16c4627b4b473d3ff7a1fae Author: Max Franz Date: 2020-12-16 (Wed, 16 Dec 2020) Changed paths: M .github/CONTRIBUTING.md M README.md M documentation/md/links.md Log Message: --- Update md files re. contributions & gh discussions -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/050c48-f4c572%40github.com.
[cytoscape/cytoscape.js] 050c48: Update issue templates
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 050c48d7c5b6b6039c909632d2b940fb5195ca22 https://github.com/cytoscape/cytoscape.js/commit/050c48d7c5b6b6039c909632d2b940fb5195ca22 Author: Max Franz Date: 2020-12-16 (Wed, 16 Dec 2020) Changed paths: A .github/ISSUE_TEMPLATE/feature_request.md Log Message: --- Update issue templates Add feature request template using the GitHub GUI -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/9541db-050c48%40github.com.
[cytoscape/cytoscape.js] 9541db: Update issue templates
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 9541db6764d7c5a7195394527a164742e6386d3f https://github.com/cytoscape/cytoscape.js/commit/9541db6764d7c5a7195394527a164742e6386d3f Author: Max Franz Date: 2020-12-16 (Wed, 16 Dec 2020) Changed paths: A .github/ISSUE_TEMPLATE/bug_report.md Log Message: --- Update issue templates Update bug report template using GitHub settings GUI -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/3eb8d9-9541db%40github.com.
[cytoscape/cytoscape.js] 99a125: Updates
Branch: refs/heads/gh-pages Home: https://github.com/cytoscape/cytoscape.js Commit: 99a125a3c0a866afc5530d64ce70d3f973e721f7 https://github.com/cytoscape/cytoscape.js/commit/99a125a3c0a866afc5530d64ce70d3f973e721f7 Author: Max Franz Date: 2020-12-15 (Tue, 15 Dec 2020) Changed paths: M index.html M js/cytoscape.min.js M md/intro.md Log Message: --- Updates -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/gh-pages/777aac-99a125%40github.com.
[cytoscape/cytoscape.js]
Branch: refs/tags/v3.17.1 Home: https://github.com/cytoscape/cytoscape.js -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/tags/v3.17.1/00-45a4b7%40github.com.
[cytoscape/cytoscape.js] 193c43: 3.17.1
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: 193c4330f1bc895de4c5aa043428c0cd1986bf2c https://github.com/cytoscape/cytoscape.js/commit/193c4330f1bc895de4c5aa043428c0cd1986bf2c Author: Max Franz Date: 2020-12-15 (Tue, 15 Dec 2020) Changed paths: M package-lock.json M package.json Log Message: --- 3.17.1 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/b9e215-193c43%40github.com.
[cytoscape/cytoscape.js] b9e215: Build 3.17.1
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: b9e215d81a4d64ee968bee912be07ed22acde284 https://github.com/cytoscape/cytoscape.js/commit/b9e215d81a4d64ee968bee912be07ed22acde284 Author: Max Franz Date: 2020-12-15 (Tue, 15 Dec 2020) Changed paths: M .size-snapshot.json M dist/cytoscape.cjs.js M dist/cytoscape.esm.js M dist/cytoscape.esm.min.js M dist/cytoscape.min.js M dist/cytoscape.umd.js M documentation/index.html M documentation/js/cytoscape.min.js M package-lock.json Log Message: --- Build 3.17.1 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/ac42ec-b9e215%40github.com.
[cytoscape/cytoscape.js]
Branch: refs/tags/v3.16.5 Home: https://github.com/cytoscape/cytoscape.js -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/tags/v3.16.5/00-9f4ba7%40github.com.
[cytoscape/cytoscape.js] 1cb7cd: Build 3.16.5
Branch: refs/heads/3.16.x Home: https://github.com/cytoscape/cytoscape.js Commit: 1cb7cdea1506864c205021183c61913e845a2c7a https://github.com/cytoscape/cytoscape.js/commit/1cb7cdea1506864c205021183c61913e845a2c7a Author: Max Franz Date: 2020-12-15 (Tue, 15 Dec 2020) Changed paths: M .size-snapshot.json M dist/cytoscape.cjs.js M dist/cytoscape.esm.js M dist/cytoscape.esm.min.js M dist/cytoscape.min.js M dist/cytoscape.umd.js M documentation/js/cytoscape.min.js M package-lock.json Log Message: --- Build 3.16.5 Commit: 75e3a7b0042faa6773ad1591d8e291c7e19fb8af https://github.com/cytoscape/cytoscape.js/commit/75e3a7b0042faa6773ad1591d8e291c7e19fb8af Author: Max Franz Date: 2020-12-15 (Tue, 15 Dec 2020) Changed paths: M package-lock.json M package.json Log Message: --- 3.16.5 Compare: https://github.com/cytoscape/cytoscape.js/compare/9d8b3c8c528c...75e3a7b0042f -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/3.16.x/9d8b3c-75e3a7%40github.com.
[cytoscape/cytoscape.js] ac42ec: Add 3.17.1 & 3.16.5 to the list of releases in the...
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: ac42ec04cd348a0ce13e29699db66775de50b334 https://github.com/cytoscape/cytoscape.js/commit/ac42ec04cd348a0ce13e29699db66775de50b334 Author: Max Franz Date: 2020-12-15 (Tue, 15 Dec 2020) Changed paths: M documentation/md/intro.md Log Message: --- Add 3.17.1 & 3.16.5 to the list of releases in the docs -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/131d26-ac42ec%40github.com.
[cytoscape/cytoscape.js] 3eb8d9: Add 3.17.1 & 3.16.5 to the list of releases in the...
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 3eb8d9734d1b237b5299253ef8f3e83b13327555 https://github.com/cytoscape/cytoscape.js/commit/3eb8d9734d1b237b5299253ef8f3e83b13327555 Author: Max Franz Date: 2020-12-15 (Tue, 15 Dec 2020) Changed paths: M documentation/md/intro.md Log Message: --- Add 3.17.1 & 3.16.5 to the list of releases in the docs -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/bd814e-3eb8d9%40github.com.
[cytoscape/cytoscape.js] 7c43e2: Bump highlight.js from 10.1.2 to 10.4.1
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 7c43e2a3e4a588a9acb99440a0c754a82b748a4b https://github.com/cytoscape/cytoscape.js/commit/7c43e2a3e4a588a9acb99440a0c754a82b748a4b Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: 2020-12-04 (Fri, 04 Dec 2020) Changed paths: M package-lock.json Log Message: --- Bump highlight.js from 10.1.2 to 10.4.1 Bumps [highlight.js](https://github.com/highlightjs/highlight.js) from 10.1.2 to 10.4.1. - [Release notes](https://github.com/highlightjs/highlight.js/releases) - [Changelog](https://github.com/highlightjs/highlight.js/blob/master/CHANGES.md) - [Commits](https://github.com/highlightjs/highlight.js/compare/10.1.2...10.4.1) Signed-off-by: dependabot[bot] Commit: bd814efcc255507be53d6574ae6c59667a2e83e7 https://github.com/cytoscape/cytoscape.js/commit/bd814efcc255507be53d6574ae6c59667a2e83e7 Author: Max Franz Date: 2020-12-15 (Tue, 15 Dec 2020) Changed paths: M package-lock.json Log Message: --- Merge pull request #2793 from cytoscape/dependabot/npm_and_yarn/highlight.js-10.4.1 Bump highlight.js from 10.1.2 to 10.4.1 Compare: https://github.com/cytoscape/cytoscape.js/compare/93b056ffbd15...bd814efcc255 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/93b056-bd814e%40github.com.
[cytoscape/cytoscape.js] 0a1515: Bump ini from 1.3.5 to 1.3.7
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 0a151552616ecfce2b0613fc15c7d9471c7c4b74 https://github.com/cytoscape/cytoscape.js/commit/0a151552616ecfce2b0613fc15c7d9471c7c4b74 Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: 2020-12-11 (Fri, 11 Dec 2020) Changed paths: M package-lock.json Log Message: --- Bump ini from 1.3.5 to 1.3.7 Bumps [ini](https://github.com/isaacs/ini) from 1.3.5 to 1.3.7. - [Release notes](https://github.com/isaacs/ini/releases) - [Commits](https://github.com/isaacs/ini/compare/v1.3.5...v1.3.7) Signed-off-by: dependabot[bot] Commit: 93b056ffbd155d834fd7de2075025068aa9b6f52 https://github.com/cytoscape/cytoscape.js/commit/93b056ffbd155d834fd7de2075025068aa9b6f52 Author: Max Franz Date: 2020-12-15 (Tue, 15 Dec 2020) Changed paths: M package-lock.json Log Message: --- Merge pull request #2796 from cytoscape/dependabot/npm_and_yarn/ini-1.3.7 Bump ini from 1.3.5 to 1.3.7 Compare: https://github.com/cytoscape/cytoscape.js/compare/6a11822e10e1...93b056ffbd15 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/6a1182-93b056%40github.com.
[cytoscape/cytoscape.js] 3ccf23: Added background-image-smoothing property
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 3ccf23624994468c30e9f750a5f592277a34aaa7 https://github.com/cytoscape/cytoscape.js/commit/3ccf23624994468c30e9f750a5f592277a34aaa7 Author: arnaudbuy Date: 2020-12-05 (Sat, 05 Dec 2020) Changed paths: M .size-snapshot.json M documentation/md/style.md M src/extensions/renderer/canvas/drawing-images.js M src/style/properties.js Log Message: --- Added background-image-smoothing property Commit: 7027bddf047d3f49afcf3fc6e4745b0b5de024a9 https://github.com/cytoscape/cytoscape.js/commit/7027bddf047d3f49afcf3fc6e4745b0b5de024a9 Author: arnaudbuy Date: 2020-12-08 (Tue, 08 Dec 2020) Changed paths: M .size-snapshot.json M documentation/md/style.md M src/extensions/renderer/canvas/drawing-images.js M src/style/properties.js Log Message: --- Addressing feedback Reset .size-snapshot.json Clarified the documentation of the property Renamed the property type to make it reusable Formatted the code Commit: 6a11822e10e11c7d8148c3c96eb519655ac25ba8 https://github.com/cytoscape/cytoscape.js/commit/6a11822e10e11c7d8148c3c96eb519655ac25ba8 Author: Max Franz Date: 2020-12-09 (Wed, 09 Dec 2020) Changed paths: M documentation/md/style.md M src/extensions/renderer/canvas/drawing-images.js M src/style/properties.js Log Message: --- Merge pull request #2794 from arnaudbuy/feature/backgroundImageSmoothing Adding background-image-smoothing property Compare: https://github.com/cytoscape/cytoscape.js/compare/b65941ea5451...6a11822e10e1 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/b65941-6a1182%40github.com.
[PathwayCommons/factoid] 92cc75: Add a catch condition that inserts a dummy article...
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 92cc756d541d673abbac8c329d9b7c511d1276b7 https://github.com/PathwayCommons/factoid/commit/92cc756d541d673abbac8c329d9b7c511d1276b7 Author: Jeffrey Wong Date: 2020-12-08 (Tue, 08 Dec 2020) Changed paths: M src/server/routes/api/document/index.js Log Message: --- Add a catch condition that inserts a dummy article only when none previous has been added (pmid in citation is null) Commit: d0a6aa21e1dc1f156fc19d91b4488a38aa1e3ec5 https://github.com/PathwayCommons/factoid/commit/d0a6aa21e1dc1f156fc19d91b4488a38aa1e3ec5 Author: Jeffrey Wong Date: 2020-12-08 (Tue, 08 Dec 2020) Changed paths: M src/server/routes/api/document/index.js Log Message: --- Only insert related papers in catch if there weren't any before. Commit: 02dfce89fe5bd240bf047509279fd91ce70e005f https://github.com/PathwayCommons/factoid/commit/02dfce89fe5bd240bf047509279fd91ce70e005f Author: Jeffrey Wong Date: 2020-12-09 (Wed, 09 Dec 2020) Changed paths: M docker/docker-compose.yml Log Message: --- Add the CRON schedule as configurable from docker-compose Commit: 39424e91205f63da601d2dbe9716b54ba917fe96 https://github.com/PathwayCommons/factoid/commit/39424e91205f63da601d2dbe9716b54ba917fe96 Author: Max Franz Date: 2020-12-09 (Wed, 09 Dec 2020) Changed paths: M docker/docker-compose.yml M src/server/routes/api/document/index.js Log Message: --- Merge pull request #916 from PathwayCommons/iss914_update-fail-gently Update paper metadata: Fail gently Compare: https://github.com/PathwayCommons/factoid/compare/3a993ef5b7b6...39424e91205f -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/3a993e-39424e%40github.com.
[PathwayCommons/factoid] bcc98b: Avoid edge arrow overlap with labels #908
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: bcc98b8d6646d963b13e54c83a1fbe6e959731f4 https://github.com/PathwayCommons/factoid/commit/bcc98b8d6646d963b13e54c83a1fbe6e959731f4 Author: Max Franz Date: 2020-12-02 (Wed, 02 Dec 2020) Changed paths: M src/util/cy.js Log Message: --- Avoid edge arrow overlap with labels #908 Commit: 3a993ef5b7b6a9922a8f9d4053e29bcca0fdf124 https://github.com/PathwayCommons/factoid/commit/3a993ef5b7b6a9922a8f9d4053e29bcca0fdf124 Author: Max Franz Date: 2020-12-07 (Mon, 07 Dec 2020) Changed paths: M src/util/cy.js Log Message: --- Merge pull request #911 from PathwayCommons/arrow-overlap Avoid edge arrow overlap with labels #908 Compare: https://github.com/PathwayCommons/factoid/compare/784ff6b35675...3a993ef5b7b6 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/784ff6-3a993e%40github.com.
[PathwayCommons/factoid] 678f7e: In summary page use the old way of showing author ...
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 678f7e5dedb0b1efcabb501c96b531a3474f79ea https://github.com/PathwayCommons/factoid/commit/678f7e5dedb0b1efcabb501c96b531a3474f79ea Author: metincansiper Date: 2020-12-02 (Wed, 02 Dec 2020) Changed paths: M src/client/components/editor/info-panel.js Log Message: --- In summary page use the old way of showing author names when author profiles data is missing. Also, use span for author names when the author page link is missing as it is used to be. Commit: 784ff6b356756a4fdfd9ff067b5647dc6a985ce4 https://github.com/PathwayCommons/factoid/commit/784ff6b356756a4fdfd9ff067b5647dc6a985ce4 Author: Max Franz Date: 2020-12-07 (Mon, 07 Dec 2020) Changed paths: M src/client/components/editor/info-panel.js Log Message: --- Merge pull request #912 from PathwayCommons/author_page_link Use old way of showing author names when the author profiles is missing in summary page. Compare: https://github.com/PathwayCommons/factoid/compare/bba32bf13d7a...784ff6b35675 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/bba32b-784ff6%40github.com.
[cytoscape/cytoscape.js] b65941: Deprecate the pie properties #2789
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: b65941ea5451e243974d763d4122b657af6c61dd https://github.com/cytoscape/cytoscape.js/commit/b65941ea5451e243974d763d4122b657af6c61dd Author: Max Franz Date: 2020-12-02 (Wed, 02 Dec 2020) Changed paths: M documentation/docmaker.json M documentation/md/style.md M src/style/apply.js Log Message: --- Deprecate the pie properties #2789 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/17a32d-b65941%40github.com.
[cytoscape/cytoscape.js] 9d8b3c: Backport 3.16.x : `ele.removed()` typo re. #2771 #...
Branch: refs/heads/3.16.x Home: https://github.com/cytoscape/cytoscape.js Commit: 9d8b3c8c528c2dbf5c8de3a0c308bb07b12e9125 https://github.com/cytoscape/cytoscape.js/commit/9d8b3c8c528c2dbf5c8de3a0c308bb07b12e9125 Author: Max Franz Date: 2020-12-02 (Wed, 02 Dec 2020) Changed paths: M src/extensions/renderer/canvas/ele-texture-cache.js Log Message: --- Backport 3.16.x : `ele.removed()` typo re. #2771 #2792 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/3.16.x/d1b20a-9d8b3c%40github.com.
[cytoscape/cytoscape.js] 131d26: `ele.removed()` typo re. #2771 #2791
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: 131d26d729efd1f912a48341834262c20572af92 https://github.com/cytoscape/cytoscape.js/commit/131d26d729efd1f912a48341834262c20572af92 Author: Max Franz Date: 2020-12-02 (Wed, 02 Dec 2020) Changed paths: M src/extensions/renderer/canvas/ele-texture-cache.js Log Message: --- `ele.removed()` typo re. #2771 #2791 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/5e3628-131d26%40github.com.
[cytoscape/cytoscape.js] 17a32d: `ele.removed()` typo re. #2771 #2791
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 17a32d74df6d00e6288e8bfb6b7fbd6994dcc2f6 https://github.com/cytoscape/cytoscape.js/commit/17a32d74df6d00e6288e8bfb6b7fbd6994dcc2f6 Author: Max Franz Date: 2020-12-02 (Wed, 02 Dec 2020) Changed paths: M src/extensions/renderer/canvas/ele-texture-cache.js Log Message: --- `ele.removed()` typo re. #2771 #2791 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/6611ac-17a32d%40github.com.
[PathwayCommons/factoid] bcc98b: Avoid edge arrow overlap with labels #908
Branch: refs/heads/arrow-overlap Home: https://github.com/PathwayCommons/factoid Commit: bcc98b8d6646d963b13e54c83a1fbe6e959731f4 https://github.com/PathwayCommons/factoid/commit/bcc98b8d6646d963b13e54c83a1fbe6e959731f4 Author: Max Franz Date: 2020-12-02 (Wed, 02 Dec 2020) Changed paths: M src/util/cy.js Log Message: --- Avoid edge arrow overlap with labels #908 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/arrow-overlap/00-bcc98b%40github.com.
[PathwayCommons/factoid] 52086e: Automatic connection of researcher profiles #907
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 52086e53df7d8398e47a889ec491c1c96fc2da9d https://github.com/PathwayCommons/factoid/commit/52086e53df7d8398e47a889ec491c1c96fc2da9d Author: metincansiper Date: 2020-11-25 (Wed, 25 Nov 2020) Changed paths: M src/client/components/editor/info-panel.js M src/styles/editor/editor.css Log Message: --- Automatic connection of researcher profiles #907 Commit: fdf4a3e05f79d98cf187fcfa4f4e528b336b2b59 https://github.com/PathwayCommons/factoid/commit/fdf4a3e05f79d98cf187fcfa4f4e528b336b2b59 Author: metincansiper Date: 2020-11-30 (Mon, 30 Nov 2020) Changed paths: M src/client/components/editor/info-panel.js M src/model/document/document.js M src/server/routes/api/document/index.js Log Message: --- Query orcid urls of authors on server side. Commit: 376b92a854fecde1b0bc65754420b9f3d559fef1 https://github.com/PathwayCommons/factoid/commit/376b92a854fecde1b0bc65754420b9f3d559fef1 Author: metincansiper Date: 2020-11-30 (Mon, 30 Nov 2020) Changed paths: M src/client/components/editor/info-panel.js Log Message: --- Fixed linting errors Commit: bba32bf13d7abefd3dcd9b122634803597208b36 https://github.com/PathwayCommons/factoid/commit/bba32bf13d7abefd3dcd9b122634803597208b36 Author: Max Franz Date: 2020-12-02 (Wed, 02 Dec 2020) Changed paths: M src/client/components/editor/info-panel.js M src/model/document/document.js M src/server/routes/api/document/index.js M src/styles/editor/editor.css Log Message: --- Merge pull request #910 from PathwayCommons/author_page_link Automatic connection of researcher profiles Compare: https://github.com/PathwayCommons/factoid/compare/53f40684ffe4...bba32bf13d7a -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/53f406-bba32b%40github.com.
[cytoscape/cytoscape.js] 6611ac: Update CONTRIBUTING.md
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 6611acdf0b7764ec1579b0baa2e9a00d6d073b56 https://github.com/cytoscape/cytoscape.js/commit/6611acdf0b7764ec1579b0baa2e9a00d6d073b56 Author: Max Franz Date: 2020-11-30 (Mon, 30 Nov 2020) Changed paths: M .github/CONTRIBUTING.md Log Message: --- Update CONTRIBUTING.md -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/835e77-6611ac%40github.com.
[cytoscape/cytoscape.js] 164313: Bump bl from 1.2.2 to 1.2.3
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 16431326a060a653f55b99c728b67cfe29d37333 https://github.com/cytoscape/cytoscape.js/commit/16431326a060a653f55b99c728b67cfe29d37333 Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: 2020-11-25 (Wed, 25 Nov 2020) Changed paths: M package-lock.json Log Message: --- Bump bl from 1.2.2 to 1.2.3 Bumps [bl](https://github.com/rvagg/bl) from 1.2.2 to 1.2.3. - [Release notes](https://github.com/rvagg/bl/releases) - [Commits](https://github.com/rvagg/bl/compare/v1.2.2...v1.2.3) Signed-off-by: dependabot[bot] Commit: 835e77a4214775b3e438ef8908f7411a06e40354 https://github.com/cytoscape/cytoscape.js/commit/835e77a4214775b3e438ef8908f7411a06e40354 Author: Max Franz Date: 2020-11-30 (Mon, 30 Nov 2020) Changed paths: M package-lock.json Log Message: --- Merge pull request #2784 from cytoscape/dependabot/npm_and_yarn/bl-1.2.3 Bump bl from 1.2.2 to 1.2.3 Compare: https://github.com/cytoscape/cytoscape.js/compare/f7f290c005d7...835e77a42147 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/f7f290-835e77%40github.com.
[cytoscape/cytoscape.js] 3d036c: Bump highlight.js from 10.0.0 to 10.1.2
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 3d036c7e0c1041b68cd7f704534cdcc35176cf28 https://github.com/cytoscape/cytoscape.js/commit/3d036c7e0c1041b68cd7f704534cdcc35176cf28 Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: 2020-11-24 (Tue, 24 Nov 2020) Changed paths: M package-lock.json Log Message: --- Bump highlight.js from 10.0.0 to 10.1.2 Bumps [highlight.js](https://github.com/highlightjs/highlight.js) from 10.0.0 to 10.1.2. - [Release notes](https://github.com/highlightjs/highlight.js/releases) - [Changelog](https://github.com/highlightjs/highlight.js/blob/10.1.2/CHANGES.md) - [Commits](https://github.com/highlightjs/highlight.js/compare/10.0.0...10.1.2) Signed-off-by: dependabot[bot] Commit: f7f290c005d7e21d52c28fee67b5fa69ebab73ac https://github.com/cytoscape/cytoscape.js/commit/f7f290c005d7e21d52c28fee67b5fa69ebab73ac Author: Max Franz Date: 2020-11-30 (Mon, 30 Nov 2020) Changed paths: M package-lock.json Log Message: --- Merge pull request #2780 from cytoscape/dependabot/npm_and_yarn/highlight.js-10.1.2 Bump highlight.js from 10.0.0 to 10.1.2 Compare: https://github.com/cytoscape/cytoscape.js/compare/e55100677dbf...f7f290c005d7 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/e55100-f7f290%40github.com.
[cytoscape/cytoscape.js] e55100: Allow function style mappers to depend on `cy.data...
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: e55100677dbfb2e391bcb6c8248bd94ebe0b25ab https://github.com/cytoscape/cytoscape.js/commit/e55100677dbfb2e391bcb6c8248bd94ebe0b25ab Author: Max Franz Date: 2020-11-25 (Wed, 25 Nov 2020) Changed paths: M documentation/md/style.md M src/core/data.js M src/core/style.js Log Message: --- Allow function style mappers to depend on `cy.data()` and `cy.scratch()` #2786 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/9b82cf-e55100%40github.com.
[cytoscape/cytoscape.js] 9b82cf: Allow `options.data` to be set for graph-level dat...
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 9b82cf62587286f74c8484d7e660190bbb90b66a https://github.com/cytoscape/cytoscape.js/commit/9b82cf62587286f74c8484d7e660190bbb90b66a Author: Max Franz Date: 2020-11-25 (Wed, 25 Nov 2020) Changed paths: M documentation/md/core/init.md M src/core/index.js M test/core-init.js Log Message: --- Allow `options.data` to be set for graph-level data at init #2785 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/cb69d2-9b82cf%40github.com.
[cytoscape/cytoscape.js] d1b20a: Backport 3.16.x : Ensure that the style is clean b...
Branch: refs/heads/3.16.x Home: https://github.com/cytoscape/cytoscape.js Commit: d1b20aa40f9b17fece3a7fd8a3626c0c0b6d6361 https://github.com/cytoscape/cytoscape.js/commit/d1b20aa40f9b17fece3a7fd8a3626c0c0b6d6361 Author: Max Franz Date: 2020-11-25 (Wed, 25 Nov 2020) Changed paths: M src/collection/style.js M src/extensions/renderer/base/coord-ele-math/rendered-style.js Log Message: --- Backport 3.16.x : Ensure that the style is clean before the renderer starts its redraw cycle. - This cleaning just applies the same logic as exists in `ele.parsedStyle()` reads -- to make sure that the style is fresh when reading a stylesheet value. - The cleaning is applied before the renderer redraw cycle only when needed. - Adds private function, `eles.cleanStyle()`. Refs. : Mappers out of date re. style caching #2782 #2783 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/3.16.x/dacbf9-d1b20a%40github.com.
[cytoscape/cytoscape.js] cb69d2: Ensure that the style is clean before the renderer...
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: cb69d2351611d6bc3424ffc2f6efba70d7e8f5cc https://github.com/cytoscape/cytoscape.js/commit/cb69d2351611d6bc3424ffc2f6efba70d7e8f5cc Author: Max Franz Date: 2020-11-25 (Wed, 25 Nov 2020) Changed paths: M src/collection/style.js M src/extensions/renderer/base/coord-ele-math/rendered-style.js Log Message: --- Ensure that the style is clean before the renderer starts its redraw cycle. - This cleaning just applies the same logic as exists in `ele.parsedStyle()` reads -- to make sure that the style is fresh when reading a stylesheet value. - The cleaning is applied before the renderer redraw cycle only when needed. - Adds private function, `eles.cleanStyle()`. Refs. : Mappers out of date re. style caching #2782 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/719b4d-cb69d2%40github.com.
[cytoscape/cytoscape.js] 5e3628: Ensure that the style is clean before the renderer...
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: 5e362893587cccfe97b1f8c447344cf43a1455d4 https://github.com/cytoscape/cytoscape.js/commit/5e362893587cccfe97b1f8c447344cf43a1455d4 Author: Max Franz Date: 2020-11-25 (Wed, 25 Nov 2020) Changed paths: M src/collection/style.js M src/extensions/renderer/base/coord-ele-math/rendered-style.js Log Message: --- Ensure that the style is clean before the renderer starts its redraw cycle. - This cleaning just applies the same logic as exists in `ele.parsedStyle()` reads -- to make sure that the style is fresh when reading a stylesheet value. - The cleaning is applied before the renderer redraw cycle only when needed. - Adds private function, `eles.cleanStyle()`. Refs. : Mappers out of date re. style caching #2782 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/eb9f7a-5e3628%40github.com.
[PathwayCommons/factoid] 4f04a1: Extended biopax zip download service with id mappi...
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 4f04a1d2839f160d94f2d318902faa21ff57485c https://github.com/PathwayCommons/factoid/commit/4f04a1d2839f160d94f2d318902faa21ff57485c Author: metincansiper Date: 2020-11-18 (Wed, 18 Nov 2020) Changed paths: M src/config.js M src/model/document/document.js M src/model/element/entity.js M src/model/element/interaction-type/binding.js M src/model/element/interaction-type/demethylation.js M src/model/element/interaction-type/dephosphorylation.js M src/model/element/interaction-type/deubiquitination.js M src/model/element/interaction-type/interaction-type.js M src/model/element/interaction-type/interaction.js M src/model/element/interaction-type/methylation.js M src/model/element/interaction-type/modification.js M src/model/element/interaction-type/phosphorylation.js M src/model/element/interaction-type/transcription-translation.js M src/model/element/interaction-type/ubiquitination.js M src/model/element/interaction.js M src/server/document-util.js M src/server/routes/api/document/export.js M src/server/routes/api/document/index.js Log Message: --- Extended biopax zip download service with id mapping parameter Commit: 35229b1633b4c767e067b07dfcb88822c403fc2b https://github.com/PathwayCommons/factoid/commit/35229b1633b4c767e067b07dfcb88822c403fc2b Author: metincansiper Date: 2020-11-19 (Thu, 19 Nov 2020) Changed paths: M src/server/routes/api/document/index.js Log Message: --- Query ncbi to uniprot id mappings chunk by chunk. Commit: 91ebbd154cb96634be666a633a2d5ba361d13bb0 https://github.com/PathwayCommons/factoid/commit/91ebbd154cb96634be666a633a2d5ba361d13bb0 Author: metincansiper Date: 2020-11-19 (Thu, 19 Nov 2020) Changed paths: M src/server/routes/api/document/index.js Log Message: --- A little code reorganization for mapping ncbi ids to uniprot ids. Commit: d2697dc0a26fb381d144f80f612791e8da48512b https://github.com/PathwayCommons/factoid/commit/d2697dc0a26fb381d144f80f612791e8da48512b Author: metincansiper Date: 2020-11-19 (Thu, 19 Nov 2020) Changed paths: M src/server/routes/api/document/index.js Log Message: --- Use a different file name while downloading the biopax zip files if the idMapping is desired. Commit: 3b813958936a47c627e1ed0408245362847fbf8f https://github.com/PathwayCommons/factoid/commit/3b813958936a47c627e1ed0408245362847fbf8f Author: metincansiper Date: 2020-11-19 (Thu, 19 Nov 2020) Changed paths: M src/client/components/document-management.js M src/client/components/home.js M src/model/document/document.js M src/server/routes/api/document/index.js Log Message: --- Merge branch 'unstable' into biopax_id_mapping Commit: 12c42a885a19d568c9c2345c153730055892d0b7 https://github.com/PathwayCommons/factoid/commit/12c42a885a19d568c9c2345c153730055892d0b7 Author: metincansiper Date: 2020-11-19 (Thu, 19 Nov 2020) Changed paths: M src/model/element/entity.js M src/server/routes/api/document/index.js Log Message: --- Use assoc.dbprefix for mapping ids to uniprot ids. Commit: 5d09849bebd8212b43542c499c616f3b6aa13a93 https://github.com/PathwayCommons/factoid/commit/5d09849bebd8212b43542c499c616f3b6aa13a93 Author: metincansiper Date: 2020-11-19 (Thu, 19 Nov 2020) Changed paths: M src/client/components/document-management.js M src/client/components/home.js M src/model/document/document.js M src/server/routes/api/document/index.js Log Message: --- Merge branch 'biopax_id_mapping' of https://github.com/PathwayCommons/factoid into biopax_id_mapping Commit: dc2f3245fcdd35d81f0733fb5154f9780a9f1447 https://github.com/PathwayCommons/factoid/commit/dc2f3245fcdd35d81f0733fb5154f9780a9f1447 Author: metincansiper Date: 2020-11-20 (Fri, 20 Nov 2020) Changed paths: M src/server/routes/api/document/index.js Log Message: --- Added swagger documentation for biopax id mapping parameter. Commit: 53f40684ffe498b43d8c7a08c613021c5268d40c https://github.com/PathwayCommons/factoid/commit/53f40684ffe498b43d8c7a08c613021c5268d40c Author: Max Franz Date: 2020-11-23 (Mon, 23 Nov 2020) Changed paths: M src/model/document/document.js M src/model/element/entity.js M src/model/element/interaction-type/binding.js M src/model/element/interaction-type/demethylation.js M src/model/element/interaction-type/dephosphorylation.js M src/model/element/interaction-type/deubiquitination.js M src/model/element/interaction-type/interaction-type.js M src/model/element/interaction-type/interaction.js M src/model/element/interaction-type/methylation.js M src/model/elem
[PathwayCommons/factoid] c1c494: Merge branch 'master' into release-0.10.0
Branch: refs/heads/v0.13.0 Home: https://github.com/PathwayCommons/factoid Commit: c1c494f481f4a0b7eba40dc35829b59af9aa2d40 https://github.com/PathwayCommons/factoid/commit/c1c494f481f4a0b7eba40dc35829b59af9aa2d40 Author: Max Franz Date: 2020-09-11 (Fri, 11 Sep 2020) Changed paths: Log Message: --- Merge branch 'master' into release-0.10.0 Use release-0.10.0 as-is git merge -s ours master Commit: 490f28a696524e66d9ccce9c129194d82199c5bc https://github.com/PathwayCommons/factoid/commit/490f28a696524e66d9ccce9c129194d82199c5bc Author: Jeffrey Date: 2020-09-11 (Fri, 11 Sep 2020) Changed paths: M .gitignore M README.md M docker/docker-compose.yml A download/README M package-lock.json M package.json M src/client-env-vars.json M src/client/components/editor/help.js M src/client/components/element-info/entity-info.js M src/client/components/home.js M src/client/components/tasks.js M src/server/routes/api/document/export.js M src/server/routes/api/document/index.js M src/server/routes/api/document/indra.js M src/styles/carousel.css M src/styles/editor/editor.css M src/styles/home.css A src/styles/image/banner-puzzle-missing.jpg A src/styles/image/banner-puzzle.jpg A src/styles/image/layer-cake-2.png A src/styles/image/logo-horizontal-name-only-black.svg A src/styles/image/macbookgrey_front.png A src/styles/image/macbookpro15_front.png A src/styles/image/phone-explore-1.png A src/styles/image/phone-explore-2.png A src/styles/image/phone-explore-3.png A src/styles/image/sample-editor-screen-fade-to-white.mp4 M src/styles/tasks.css M src/styles/vars.css Log Message: --- Merge pull request #826 from PathwayCommons/release-0.10.0 Release 0.10.0 Commit: 1c582583387fd56d972301bb9a82a8be81806225 https://github.com/PathwayCommons/factoid/commit/1c582583387fd56d972301bb9a82a8be81806225 Author: Jeffrey Date: 2020-09-21 (Mon, 21 Sep 2020) Changed paths: M package-lock.json M package.json M src/client/components/carousel.js M src/client/components/element-info/entity-info.js M src/client/components/home.js M src/client/defs.js M src/model/document/document.js M src/server/routes/api/document/export.js M src/server/routes/api/document/index.js M src/styles/base.css M src/styles/carousel.css M src/styles/home.css A src/styles/image/banner.png A src/styles/image/sample-editor-screen-ras-raf.mp4 Log Message: --- Merge pull request #835 from PathwayCommons/v0.10.1-release V0.10.1 release Commit: eef3d919966fe6893c3b007c6b0a229b2b94dcc5 https://github.com/PathwayCommons/factoid/commit/eef3d919966fe6893c3b007c6b0a229b2b94dcc5 Author: Jeffrey Date: 2020-10-05 (Mon, 05 Oct 2020) Changed paths: M package-lock.json M package.json M src/client/components/carousel.js M src/client/components/document-management-components.js M src/client/components/document-management.js M src/client/components/editor/index.js M src/client/components/tasks.js M src/model/document/document.js M src/model/element/interaction-type/binding.js M src/server/routes/api/document/export.js M src/server/routes/api/document/index.js M src/server/routes/api/document/pubmed/fetchPubmed.js M src/server/routes/api/document/pubmed/index.js M src/server/routes/api/document/update.js M src/server/routes/index.js A src/server/sitemap.js M src/styles/document-management.css R src/styles/image/card-banner.jpg A src/styles/image/card-banner.png M src/util/pubmed.js M src/views/index.html.ejs M test/pubmed/fetchPubmed.js A test/sitemap/docs2Sitemap.js A test/sitemap/docsData.json Log Message: --- Merge pull request #856 from PathwayCommons/v0.11.0 Version 0.11.0 Commit: 8fdabfd4699a8fbfcba8bc4855605da299148b88 https://github.com/PathwayCommons/factoid/commit/8fdabfd4699a8fbfcba8bc4855605da299148b88 Author: Jeffrey Date: 2020-10-13 (Tue, 13 Oct 2020) Changed paths: M package-lock.json M package.json M src/client/components/document-management-components.js M src/client/components/document-management.js M src/client/components/editor/submit.js M src/client/components/element-info/entity-info.js M src/client/components/tasks.js M src/client/index.js M src/client/polyfills.js M src/model/document/document.js M src/model/element/element.js M src/model/element/entity.js M src/model/organism.js M src/server/routes/api/document/index.js M src/server/routes/api/document/indra.js M src/styles/carousel.css M src/styles/document-management.css M src/styles/tasks.css Log Message: --- Merge pull request #872 from PathwayCommons/v0.12.0 V0.12.0
[PathwayCommons/factoid] 6d07f4: Read the paper link points to preprint
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 6d07f452dd78fdbde1430ff7da39a98e305c1ba6 https://github.com/PathwayCommons/factoid/commit/6d07f452dd78fdbde1430ff7da39a98e305c1ba6 Author: Jeffrey Wong Date: 2020-11-20 (Fri, 20 Nov 2020) Changed paths: M src/client/components/home.js Log Message: --- Read the paper link points to preprint Commit: d1e98c2a813aacea65be5dfd9d47043d4ac9ccdc https://github.com/PathwayCommons/factoid/commit/d1e98c2a813aacea65be5dfd9d47043d4ac9ccdc Author: Max Franz Date: 2020-11-20 (Fri, 20 Nov 2020) Changed paths: M src/client/components/home.js Log Message: --- Merge pull request #905 from PathwayCommons/iss770_read-the-paper Read the paper link points to preprint Compare: https://github.com/PathwayCommons/factoid/compare/49e93ec85f8c...d1e98c2a813a -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/49e93e-d1e98c%40github.com.
[PathwayCommons/factoid] 175d5a: Expose the EMAIL_RELPPRS_CONTACT as a env variable...
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 175d5aa558cd4bfc8909f42460993a2ffe875180 https://github.com/PathwayCommons/factoid/commit/175d5aa558cd4bfc8909f42460993a2ffe875180 Author: Jeffrey Wong Date: 2020-11-19 (Thu, 19 Nov 2020) Changed paths: M docker/docker-compose.yml Log Message: --- Expose the EMAIL_RELPPRS_CONTACT as a env variable in Docker. Commit: 49e93ec85f8ceab662c58617570ad240dfff9fb9 https://github.com/PathwayCommons/factoid/commit/49e93ec85f8ceab662c58617570ad240dfff9fb9 Author: Max Franz Date: 2020-11-19 (Thu, 19 Nov 2020) Changed paths: M docker/docker-compose.yml Log Message: --- Merge pull request #903 from PathwayCommons/docker-expose-relpprs-email Expose the EMAIL_RELPPRS_CONTACT as a env variable in Docker. Compare: https://github.com/PathwayCommons/factoid/compare/43031034d872...49e93ec85f8c -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/430310-49e93e%40github.com.
[cytoscape/cytoscape.js] 777aac: Updates
Branch: refs/heads/gh-pages Home: https://github.com/cytoscape/cytoscape.js Commit: 777aac3e29bd97d370c3aedd43ee909ee464b5db https://github.com/cytoscape/cytoscape.js/commit/777aac3e29bd97d370c3aedd43ee909ee464b5db Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M index.html M js/cytoscape.min.js M md/extensions.md M md/links.md M md/style.md Log Message: --- Updates -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/gh-pages/5b1f1a-777aac%40github.com.
[cytoscape/cytoscape.js]
Branch: refs/tags/v3.17.0 Home: https://github.com/cytoscape/cytoscape.js -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/tags/v3.17.0/00-c74eae%40github.com.
[cytoscape/cytoscape.js] cab58a: Build 3.17.0
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: cab58a1fd9ca80cf2cf8823457ce60be6c7d8100 https://github.com/cytoscape/cytoscape.js/commit/cab58a1fd9ca80cf2cf8823457ce60be6c7d8100 Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M .size-snapshot.json M dist/cytoscape.cjs.js M dist/cytoscape.esm.js M dist/cytoscape.esm.min.js M dist/cytoscape.min.js M dist/cytoscape.umd.js M documentation/index.html M documentation/js/cytoscape.min.js M package-lock.json Log Message: --- Build 3.17.0 Commit: eb9f7a39a87addb28313b573570be49ca48bc260 https://github.com/cytoscape/cytoscape.js/commit/eb9f7a39a87addb28313b573570be49ca48bc260 Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M package-lock.json M package.json Log Message: --- 3.17.0 Compare: https://github.com/cytoscape/cytoscape.js/compare/617f84b978e5...eb9f7a39a87a -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/617f84-eb9f7a%40github.com.
[cytoscape/cytoscape.js] b620da: Add layout-utils extension to docs
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: b620daa99d413877c18edd70102d454f10432f33 https://github.com/cytoscape/cytoscape.js/commit/b620daa99d413877c18edd70102d454f10432f33 Author: Max Franz Date: 2020-09-14 (Mon, 14 Sep 2020) Changed paths: M README.md M documentation/md/extensions.md M documentation/md/links.md Log Message: --- Add layout-utils extension to docs Commit: 3d746d408191e7f74f2d9213b7bee6a3fb8c1e06 https://github.com/cytoscape/cytoscape.js/commit/3d746d408191e7f74f2d9213b7bee6a3fb8c1e06 Author: Max Franz Date: 2020-09-14 (Mon, 14 Sep 2020) Changed paths: M documentation/md/extensions.md Log Message: --- Rename edge-editing ext in docs Commit: f0862fa8e23db3fb2d9bc38e16604aa3ff564410 https://github.com/cytoscape/cytoscape.js/commit/f0862fa8e23db3fb2d9bc38e16604aa3ff564410 Author: Max Franz Date: 2020-09-17 (Thu, 17 Sep 2020) Changed paths: M src/collection/style.js M src/style/apply.js M src/style/index.js Log Message: --- The `newStyle` flag in the styler doesn't make sense anymore. It conflicts with the use of lazy, per-element style application (#2723). Use `style.clear()` to perform the same actions as would be previously performed at `style.apply()` with `newStyle === true`. Details: - Use a `appliedInitStyle` flag for elements to indicate whether a fresh stylesheet is being applied for the first time. This is necessary for transitions. - `styleCxtKey` is cleared out in `style.clearStyleHints()`. - Moves `_private.styleDirty = true` down one line for good measure, but this doesn't directly affect this issue. Refs. : Style updates are faulty after switching to a new stylesheet #2747 Commit: f787767b5c95eeda8841257d0b68df17ce8d2d51 https://github.com/cytoscape/cytoscape.js/commit/f787767b5c95eeda8841257d0b68df17ce8d2d51 Author: Max Franz Date: 2020-09-17 (Thu, 17 Sep 2020) Changed paths: M src/collection/style.js Log Message: --- The `styleDirty = false` line should be in the counterintuitive order. Add comment. Refs. : Style updates are faulty after switching to a new stylesheet #2747 Commit: f3dd5a51a9ca4799d758b57026ffaca85ff04a4a https://github.com/cytoscape/cytoscape.js/commit/f3dd5a51a9ca4799d758b57026ffaca85ff04a4a Author: Max Franz Date: 2020-09-21 (Mon, 21 Sep 2020) Changed paths: M documentation/md/intro.md Log Message: --- Add 3.16.1 to the list of releases Commit: 66040490a39920a79b3de1e691c46f8d172333ee https://github.com/cytoscape/cytoscape.js/commit/66040490a39920a79b3de1e691c46f8d172333ee Author: Max Franz Date: 2020-09-21 (Mon, 21 Sep 2020) Changed paths: M .size-snapshot.json M dist/cytoscape.cjs.js M dist/cytoscape.esm.js M dist/cytoscape.esm.min.js M dist/cytoscape.min.js M dist/cytoscape.umd.js M documentation/index.html M documentation/js/cytoscape.min.js Log Message: --- Build 3.16.1 Commit: 628828df977b15e86e5f0eafaa0185bede1a31ed https://github.com/cytoscape/cytoscape.js/commit/628828df977b15e86e5f0eafaa0185bede1a31ed Author: Max Franz Date: 2020-09-21 (Mon, 21 Sep 2020) Changed paths: M package-lock.json M package.json Log Message: --- 3.16.1 Commit: cf39c72ab0c0175c05e854ecc0454ebd6f1ca06e https://github.com/cytoscape/cytoscape.js/commit/cf39c72ab0c0175c05e854ecc0454ebd6f1ca06e Author: Max Franz Date: 2020-09-28 (Mon, 28 Sep 2020) Changed paths: M src/collection/dimensions/bounds.js M src/extensions/renderer/base/coord-ele-math/labels.js Log Message: --- Label size calculations should not allow for a margin of error (MOE). Instead, the bounding box should be expanded slightly for the MOE. The BB is bilaterally symmetric about the centre point, whereas the dimension calculations are not. Refs. : Label alignment : Labels not centered #2749 Commit: f3d084915b01a6a94e97e317fb81834cdeef4205 https://github.com/cytoscape/cytoscape.js/commit/f3d084915b01a6a94e97e317fb81834cdeef4205 Author: Max Franz Date: 2020-09-28 (Mon, 28 Sep 2020) Changed paths: M debug/index.html M debug/view.js Log Message: --- Add body bounds button to debug page & make `showBB()` global Commit: 0a752ee1a4f7beab52f35552f0651d091f5a8e7d https://github.com/cytoscape/cytoscape.js/commit/0a752ee1a4f7beab52f35552f0651d091f5a8e7d Author: Max Franz Date: 2020-09-28 (Mon, 28 Sep 2020) Changed paths: M src/collection/dimensions/bounds.js Log Message: --- `ele.boundingBox()` should be aware of `styleDirty` flag re. caching Refs. : - Rendering the label when it changes #2752 - Strange squished fonts on font size change #2754 Commit: 46b11e06cedb4b9babf17aa64a2fbfd9c81922b
[cytoscape/cytoscape.js] 265f08: Bump http-proxy from 1.18.0 to 1.18.1
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: 265f08791f71be59f09ad573c1547fe7ffb03500 https://github.com/cytoscape/cytoscape.js/commit/265f08791f71be59f09ad573c1547fe7ffb03500 Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: 2020-09-10 (Thu, 10 Sep 2020) Changed paths: M package-lock.json Log Message: --- Bump http-proxy from 1.18.0 to 1.18.1 Bumps [http-proxy](https://github.com/http-party/node-http-proxy) from 1.18.0 to 1.18.1. - [Release notes](https://github.com/http-party/node-http-proxy/releases) - [Changelog](https://github.com/http-party/node-http-proxy/blob/master/CHANGELOG.md) - [Commits](https://github.com/http-party/node-http-proxy/compare/1.18.0...1.18.1) Signed-off-by: dependabot[bot] Commit: f58697942cd26cf053b1d2e263699e267215d7d8 https://github.com/cytoscape/cytoscape.js/commit/f58697942cd26cf053b1d2e263699e267215d7d8 Author: Max Franz Date: 2020-09-14 (Mon, 14 Sep 2020) Changed paths: M package-lock.json M package.json Log Message: --- Update package files to 3.17.0-unstable Commit: eb6f05acab9e69ace1d9ee72c3bbd538cc3124ec https://github.com/cytoscape/cytoscape.js/commit/eb6f05acab9e69ace1d9ee72c3bbd538cc3124ec Author: Max Franz Date: 2020-09-14 (Mon, 14 Sep 2020) Changed paths: M README.md M documentation/md/extensions.md M documentation/md/links.md Log Message: --- Add layout-utils extension to docs Commit: d802ff6275cbdf4a87662538dbc4929bc992d20a https://github.com/cytoscape/cytoscape.js/commit/d802ff6275cbdf4a87662538dbc4929bc992d20a Author: Max Franz Date: 2020-09-14 (Mon, 14 Sep 2020) Changed paths: M documentation/md/extensions.md Log Message: --- Rename edge-editing ext in docs Commit: 2ffe2de056dd09415f4183b45173f29ee5200eb8 https://github.com/cytoscape/cytoscape.js/commit/2ffe2de056dd09415f4183b45173f29ee5200eb8 Author: Max Franz Date: 2020-09-14 (Mon, 14 Sep 2020) Changed paths: M .size-snapshot.json M dist/cytoscape.cjs.js M dist/cytoscape.esm.js M dist/cytoscape.esm.min.js M dist/cytoscape.min.js M dist/cytoscape.umd.js M documentation/index.html M documentation/js/cytoscape.min.js Log Message: --- Build 3.16.0 Commit: 4c919a47c942220a5b79668c12259edeac179d99 https://github.com/cytoscape/cytoscape.js/commit/4c919a47c942220a5b79668c12259edeac179d99 Author: Max Franz Date: 2020-09-14 (Mon, 14 Sep 2020) Changed paths: M package-lock.json M package.json Log Message: --- 3.16.0 Commit: c583c60d4d3b4bc958dab22c1115505878d354ce https://github.com/cytoscape/cytoscape.js/commit/c583c60d4d3b4bc958dab22c1115505878d354ce Author: Max Franz Date: 2020-09-17 (Thu, 17 Sep 2020) Changed paths: M src/collection/style.js M src/style/apply.js M src/style/index.js Log Message: --- The `newStyle` flag in the styler doesn't make sense anymore. It conflicts with the use of lazy, per-element style application (#2723). Use `style.clear()` to perform the same actions as would be previously performed at `style.apply()` with `newStyle === true`. Details: - Use a `appliedInitStyle` flag for elements to indicate whether a fresh stylesheet is being applied for the first time. This is necessary for transitions. - `styleCxtKey` is cleared out in `style.clearStyleHints()`. - Moves `_private.styleDirty = true` down one line for good measure, but this doesn't directly affect this issue. Refs. : Style updates are faulty after switching to a new stylesheet #2747 Commit: ac75e9a4778c7dcee25bfcf731f1c9dae18c12ba https://github.com/cytoscape/cytoscape.js/commit/ac75e9a4778c7dcee25bfcf731f1c9dae18c12ba Author: Max Franz Date: 2020-09-17 (Thu, 17 Sep 2020) Changed paths: M src/collection/style.js Log Message: --- The `styleDirty = false` line should be in the counterintuitive order. Add comment. Refs. : Style updates are faulty after switching to a new stylesheet #2747 Commit: 74901fea4d339b15031cefcc37a3c301f1f2fc1d https://github.com/cytoscape/cytoscape.js/commit/74901fea4d339b15031cefcc37a3c301f1f2fc1d Author: Max Franz Date: 2020-09-21 (Mon, 21 Sep 2020) Changed paths: M documentation/md/intro.md Log Message: --- Add 3.16.1 to the list of releases Commit: ac10abe33a0895fed618fad97cc2ae83504d261d https://github.com/cytoscape/cytoscape.js/commit/ac10abe33a0895fed618fad97cc2ae83504d261d Author: Max Franz Date: 2020-09-21 (Mon, 21 Sep 2020) Changed paths: M package-lock.json M package.json Log Message: --- Update package to 3.17.0-unstable Commit: 43f35dda446478bbf00f01e673fff21f5241beb6 https://github.com/cytoscape/cyt
[cytoscape/cytoscape.js] dacbf9: Remove postpublish target for 3.16.x branch
Branch: refs/heads/3.16.x Home: https://github.com/cytoscape/cytoscape.js Commit: dacbf9a9c8ef67bdd3740f7dbda8058061333022 https://github.com/cytoscape/cytoscape.js/commit/dacbf9a9c8ef67bdd3740f7dbda8058061333022 Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M package.json Log Message: --- Remove postpublish target for 3.16.x branch -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/3.16.x/d59a4c-dacbf9%40github.com.
[cytoscape/cytoscape.js]
Branch: refs/heads/3.16.x Home: https://github.com/cytoscape/cytoscape.js -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/3.16.x/00-d59a4c%40github.com.
[cytoscape/cytoscape.js]
Branch: refs/tags/v3.16.4 Home: https://github.com/cytoscape/cytoscape.js -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/tags/v3.16.4/00-561176%40github.com.
[cytoscape/cytoscape.js] 5b1f1a: Updates
Branch: refs/heads/gh-pages Home: https://github.com/cytoscape/cytoscape.js Commit: 5b1f1aab4a619f1eefb7f10b99b34f6f5c63168e https://github.com/cytoscape/cytoscape.js/commit/5b1f1aab4a619f1eefb7f10b99b34f6f5c63168e Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M index.html M js/cytoscape.min.js M md/intro.md M md/notation.md Log Message: --- Updates -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/gh-pages/51681f-5b1f1a%40github.com.
[cytoscape/cytoscape.js] 79c13a: Build 3.16.4
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: 79c13af11adcbcf92dd23b4424e4a91261f2fc03 https://github.com/cytoscape/cytoscape.js/commit/79c13af11adcbcf92dd23b4424e4a91261f2fc03 Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M .size-snapshot.json M dist/cytoscape.cjs.js M dist/cytoscape.esm.js M dist/cytoscape.esm.min.js M dist/cytoscape.min.js M dist/cytoscape.umd.js M documentation/index.html M documentation/js/cytoscape.min.js Log Message: --- Build 3.16.4 Commit: d59a4c4baf152a2b6dc2b8ec3c476812307bb545 https://github.com/cytoscape/cytoscape.js/commit/d59a4c4baf152a2b6dc2b8ec3c476812307bb545 Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M package-lock.json M package.json Log Message: --- 3.16.4 Compare: https://github.com/cytoscape/cytoscape.js/compare/727e98bd4db1...d59a4c4baf15 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/727e98-d59a4c%40github.com.
[cytoscape/cytoscape.js] b5f466: Build 3.15.5
Branch: refs/heads/3.15.x Home: https://github.com/cytoscape/cytoscape.js Commit: b5f466f5b829f19c3f7abfd54887c2a512f7868d https://github.com/cytoscape/cytoscape.js/commit/b5f466f5b829f19c3f7abfd54887c2a512f7868d Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M .size-snapshot.json M dist/cytoscape.cjs.js M dist/cytoscape.esm.js M dist/cytoscape.esm.min.js M dist/cytoscape.min.js M dist/cytoscape.umd.js M documentation/js/cytoscape.min.js Log Message: --- Build 3.15.5 Commit: 54d59de3fd6d582201408239b0ca2678cbca1492 https://github.com/cytoscape/cytoscape.js/commit/54d59de3fd6d582201408239b0ca2678cbca1492 Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M package-lock.json M package.json Log Message: --- 3.15.5 Compare: https://github.com/cytoscape/cytoscape.js/compare/b6f7fe5a2a45...54d59de3fd6d -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/3.15.x/b6f7fe-54d59d%40github.com.
[cytoscape/cytoscape.js]
Branch: refs/tags/v3.15.5 Home: https://github.com/cytoscape/cytoscape.js -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/tags/v3.15.5/00-ed4d24%40github.com.
[cytoscape/cytoscape.js] 11c023: List extension : cytoscape-mapbox-gl #2773
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 11c02363a673ef5b48202c1f75eefdfc5b95d028 https://github.com/cytoscape/cytoscape.js/commit/11c02363a673ef5b48202c1f75eefdfc5b95d028 Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M README.md M documentation/md/extensions.md M documentation/md/links.md Log Message: --- List extension : cytoscape-mapbox-gl #2773 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/19f3a0-11c023%40github.com.
[cytoscape/cytoscape.js] b6f7fe: Backport 3.15.x : Uncaught TypeError: Cannot read ...
Branch: refs/heads/3.15.x Home: https://github.com/cytoscape/cytoscape.js Commit: b6f7fe5a2a45297ef5d022bbd9fd01c6d107a777 https://github.com/cytoscape/cytoscape.js/commit/b6f7fe5a2a45297ef5d022bbd9fd01c6d107a777 Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M src/extensions/renderer/canvas/ele-texture-cache.js Log Message: --- Backport 3.15.x : Uncaught TypeError: Cannot read property 'w' of null #2774 #2770 Merge pull request #2771 from janhartmann/patch-1 Short circuit when `bb` is not defined -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/3.15.x/fbf005-b6f7fe%40github.com.
[cytoscape/cytoscape.js] 326a9d: Short circuit when `b` is not defined (#2770)
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: 326a9da9fe5c6337c4efa1e42d596ae290c65638 https://github.com/cytoscape/cytoscape.js/commit/326a9da9fe5c6337c4efa1e42d596ae290c65638 Author: Jan Hartmann <1107383+janhartm...@users.noreply.github.com> Date: 2020-11-07 (Sat, 07 Nov 2020) Changed paths: M src/extensions/renderer/canvas/ele-texture-cache.js Log Message: --- Short circuit when `b` is not defined (#2770) Commit: 24435588a1bb0757461fc39a2ebec7937309716c https://github.com/cytoscape/cytoscape.js/commit/24435588a1bb0757461fc39a2ebec7937309716c Author: Jan Hartmann <1107383+janhartm...@users.noreply.github.com> Date: 2020-11-07 (Sat, 07 Nov 2020) Changed paths: M src/extensions/renderer/canvas/ele-texture-cache.js Log Message: --- Update ele-texture-cache.js Commit: ab85d3553cf4e533454740e2824fd41cd7fe263a https://github.com/cytoscape/cytoscape.js/commit/ab85d3553cf4e533454740e2824fd41cd7fe263a Author: Jan Hartmann <1107383+janhartm...@users.noreply.github.com> Date: 2020-11-09 (Mon, 09 Nov 2020) Changed paths: M src/extensions/renderer/canvas/ele-texture-cache.js Log Message: --- Ensure element is not removed Commit: 727e98bd4db184102ac1f15bbc1bb2c340323c2d https://github.com/cytoscape/cytoscape.js/commit/727e98bd4db184102ac1f15bbc1bb2c340323c2d Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M src/extensions/renderer/canvas/ele-texture-cache.js Log Message: --- Merge pull request #2771 from janhartmann/patch-1 Short circuit when `bb` is not defined Compare: https://github.com/cytoscape/cytoscape.js/compare/eebc18580336...727e98bd4db1 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/eebc18-727e98%40github.com.
[cytoscape/cytoscape.js] 19f3a0: Merge pull request #2771 from janhartmann/patch-1
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 19f3a02b1d23f8959a0c652d68bb6faf77ca51eb https://github.com/cytoscape/cytoscape.js/commit/19f3a02b1d23f8959a0c652d68bb6faf77ca51eb Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M src/extensions/renderer/canvas/ele-texture-cache.js Log Message: --- Merge pull request #2771 from janhartmann/patch-1 Short circuit when `bb` is not defined -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/1f8f6e-19f3a0%40github.com.
[cytoscape/cytoscape.js] eebc18: Add 3.17.0, 3.16.4, & 3.15.5 to the release list
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: eebc185803363dfa065bcc332dc5f1b9ef9bd4f0 https://github.com/cytoscape/cytoscape.js/commit/eebc185803363dfa065bcc332dc5f1b9ef9bd4f0 Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M documentation/md/intro.md Log Message: --- Add 3.17.0, 3.16.4, & 3.15.5 to the release list -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/0073d3-eebc18%40github.com.
[cytoscape/cytoscape.js] 1f8f6e: Add 3.17.0, 3.16.4, & 3.15.5 to the release list
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 1f8f6ec5354793ee56e25e95b430ec9a5ca07858 https://github.com/cytoscape/cytoscape.js/commit/1f8f6ec5354793ee56e25e95b430ec9a5ca07858 Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M documentation/md/intro.md Log Message: --- Add 3.17.0, 3.16.4, & 3.15.5 to the release list -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/78849c-1f8f6e%40github.com.
[cytoscape/cytoscape.js] 0073d3: Soften the `style` bypass at element creation warn...
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: 0073d3672dc3438684b16209e73afa396299ae4d https://github.com/cytoscape/cytoscape.js/commit/0073d3672dc3438684b16209e73afa396299ae4d Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M documentation/md/notation.md M src/collection/element.js Log Message: --- Soften the `style` bypass at element creation warning. - Soften the language in the warning. - Keep as a warning instead of a deprecation for v4. -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/259185-0073d3%40github.com.
[cytoscape/cytoscape.js] 78849c: Soften the `style` bypass at element creation warn...
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 78849c0cc622b5615a1529fd596a817766b937d7 https://github.com/cytoscape/cytoscape.js/commit/78849c0cc622b5615a1529fd596a817766b937d7 Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M documentation/md/notation.md M src/collection/element.js Log Message: --- Soften the `style` bypass at element creation warning. - Soften the language in the warning. - Keep as a warning instead of a deprecation for v4. -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/b06b3c-78849c%40github.com.
[cytoscape/cytoscape.js]
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/259185-259185%40github.com.
[PathwayCommons/factoid] ebbcdf: Provide the individual name parts (if they exist) ...
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: ebbcdf3d94220fa1cbb5ab9b484efdd7ec592224 https://github.com/PathwayCommons/factoid/commit/ebbcdf3d94220fa1cbb5ab9b484efdd7ec592224 Author: Jeffrey Wong Date: 2020-11-11 (Wed, 11 Nov 2020) Changed paths: M src/util/pubmed.js Log Message: --- Provide the individual name parts (if they exist) in the citation attribute. Commit: 67643f86a783719479d674b3888ab09164010bff https://github.com/PathwayCommons/factoid/commit/67643f86a783719479d674b3888ab09164010bff Author: Jeffrey Wong Date: 2020-11-11 (Wed, 11 Nov 2020) Changed paths: M src/util/pubmed.js Log Message: --- Add name parts to contact Commit: ebd0086384bb4f5cae866f438776211a1e45e2a1 https://github.com/PathwayCommons/factoid/commit/ebd0086384bb4f5cae866f438776211a1e45e2a1 Author: Jeffrey Wong Date: 2020-11-11 (Wed, 11 Nov 2020) Changed paths: M src/server/routes/api/document/index.js Log Message: --- Use the contact ForeName as name for email message Commit: 94a9bcdc0d447f9fe1c90b1d6a30d4e05485ac29 https://github.com/PathwayCommons/factoid/commit/94a9bcdc0d447f9fe1c90b1d6a30d4e05485ac29 Author: Max Franz Date: 2020-11-12 (Thu, 12 Nov 2020) Changed paths: M src/server/routes/api/document/index.js M src/util/pubmed.js Log Message: --- Merge pull request #899 from PathwayCommons/iss858_name-parts Provide author name parts and use in emails to ref'd paper authors Compare: https://github.com/PathwayCommons/factoid/compare/52ce17cf396f...94a9bcdc0d44 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/52ce17-94a9bc%40github.com.
[cytoscape/cytoscape.js]
Branch: refs/heads/typescript Home: https://github.com/cytoscape/cytoscape.js -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/typescript/00-b06b3c%40github.com.
[PathwayCommons/factoid] 52ce17: Related papers emails: strip out final period in t...
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 52ce17cf396ff4945d8127ad6a399633013f9a60 https://github.com/PathwayCommons/factoid/commit/52ce17cf396ff4945d8127ad6a399633013f9a60 Author: Max Franz Date: 2020-11-11 (Wed, 11 Nov 2020) Changed paths: M src/server/email.js M src/util/strings.js Log Message: --- Related papers emails: strip out final period in title and add firstAuthorEtAl var -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/5c3b4b-52ce17%40github.com.
[PathwayCommons/factoid] 7fdf9f: Move util/dom and util/document
Branch: refs/heads/iss858_move-email-server Home: https://github.com/PathwayCommons/factoid Commit: 7fdf9f2de5de346240cd319bc0bf21bf6db2212e https://github.com/PathwayCommons/factoid/commit/7fdf9f2de5de346240cd319bc0bf21bf6db2212e Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: R src/client/client-util/file.js R src/client/client-util/index.js M src/client/components/carousel.js M src/client/components/document-management-components.js M src/client/components/document-management.js M src/client/components/editor/help.js M src/client/components/editor/index.js M src/client/components/editor/info-panel.js M src/client/components/editor/submit.js M src/client/components/element-info/entity-info.js M src/client/components/element-info/progression-stepper.js M src/client/components/home.js M src/client/components/notification/base.js M src/client/components/notification/corner.js M src/client/components/notification/inline.js M src/client/components/notification/panel.js M src/client/components/tasks.js M src/client/components/twitter-share.js A src/client/dom.js M src/client/index.js A src/server/document-util.js M src/server/routes/api/document/export.js R src/util/document.js R src/util/dom.js M src/util/index.js Log Message: --- Move util/dom and util/document -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/iss858_move-email-server/7a52c9-7fdf9f%40github.com.
[PathwayCommons/factoid] 715ede: Related papers notification
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 715ede09df6219cec28ba2f54961d86a2a32bac1 https://github.com/PathwayCommons/factoid/commit/715ede09df6219cec28ba2f54961d86a2a32bac1 Author: Max Franz Date: 2020-10-28 (Wed, 28 Oct 2020) Changed paths: M src/config.js M src/model/document/document.js M src/server/routes/api/document/index.js M src/util/email.js Log Message: --- Related papers notification Details: - This is currently a prototype. - A new email template type is defined as `relatedPaperNotification`. - The emails are triggered whenever the related papers are updated for a document. - A new metadata field is available on a document. `doc.relatedPapersNotified()` can be used to set or get whether the notifications have been sent. This prevents duplicates. - Novel interactions are an optional enhancement in the emails: An author can receive an email whether or not the originating factoid has a novel interaction. However, if there is a novel interaction, this should be mentioned in the email. - Currently, only notifications are sent to the terminal. The emails are disabled until the template is set up. - Action items are marked by `// TODO RPM` Action items: - [ ] Add a template to Mailjet (@jvwong), based on our email document on Google Docs. - [ ] Reuse our Indra querying code to determine whether there is a novel interaction -- i.e. an interaction that has zero results in Indra (@metincansiper). - [ ] Verify that our emails send correctly on unstable. We'll temporary set unstable to send these notifications to Max and Jeff (@maxkfranz @jvwong). - [ ] Finalise the email template text (@maxkfranz). - [ ] Research the feasibility of the bonus 'factoidable' nudge: Can we determine using AI whether a paper is a good candidate for Biofactoid? Ref. : Novel interaction notification #858 Commit: 1d1a5ed21f6f86ee31b7b32ab9dc315b4f5d2cae https://github.com/PathwayCommons/factoid/commit/1d1a5ed21f6f86ee31b7b32ab9dc315b4f5d2cae Author: Jeffrey Wong Date: 2020-11-06 (Fri, 06 Nov 2020) Changed paths: M src/model/document/document.js Log Message: --- Attribute for stashing references for the article Commit: 6dd39ccd92fb39f1c2aabf2af56c2571d4f7b73c https://github.com/PathwayCommons/factoid/commit/6dd39ccd92fb39f1c2aabf2af56c2571d4f7b73c Author: Jeffrey Wong Date: 2020-11-06 (Fri, 06 Nov 2020) Changed paths: M src/server/routes/api/document/pubmed/linkPubmed.js Log Message: --- - Expose helper function elink2UidList (renamed from data2UidList) - Accept an optional filter for linknames Commit: ddfb05c40f3b770abea9ccacd417552def08a892 https://github.com/PathwayCommons/factoid/commit/ddfb05c40f3b770abea9ccacd417552def08a892 Author: Jeffrey Wong Date: 2020-11-06 (Fri, 06 Nov 2020) Changed paths: M src/server/routes/api/document/index.js Log Message: --- Add a capability for setting the subset of referenced papers inside the 'getRelPprsForDoc' Commit: dd4b45a2b15dc8ef8754b1cb5b1e78fea9c7a0e2 https://github.com/PathwayCommons/factoid/commit/dd4b45a2b15dc8ef8754b1cb5b1e78fea9c7a0e2 Author: Jeffrey Wong Date: 2020-11-06 (Fri, 06 Nov 2020) Changed paths: M src/server/routes/api/document/index.js Log Message: --- Use the new set of referenced papers. Commit: fa2050ac8213e66ee38d664742dc6b7bd3563b15 https://github.com/PathwayCommons/factoid/commit/fa2050ac8213e66ee38d664742dc6b7bd3563b15 Author: Jeffrey Wong Date: 2020-11-09 (Mon, 09 Nov 2020) Changed paths: M src/config.js M src/server/routes/api/document/index.js Log Message: --- Add an admin email, use in the relatedPapers emailer. Commit: 062ee8cd52de38679d4db68c72614f30c761ee3e https://github.com/PathwayCommons/factoid/commit/062ee8cd52de38679d4db68c72614f30c761ee3e Author: Jeffrey Wong Date: 2020-11-09 (Mon, 09 Nov 2020) Changed paths: M src/config.js M src/server/routes/api/document/index.js Log Message: --- - emailRelatedPaperAuthors bundled with code for document status being switched to 'public', following submission - EMAIL_RELPPRS_CONTACT config that flags whether the relatedPapersEmails should be sent to contacts (default true) Commit: d67ad38f17f94cbaaf713bdba36ea696fae9737d https://github.com/PathwayCommons/factoid/commit/d67ad38f17f94cbaaf713bdba36ea696fae9737d Author: metincansiper Date: 2020-11-09 (Mon, 09 Nov 2020) Changed paths: M src/model/element/interaction.js M src/server/routes/api/document/index.js Log Message: --- Mark novel interactios. Commit: fc92759ac2af1a68a654639d0eb5e01b3e8dc297 https://github.com/PathwayCommons/factoid/commit/fc92759ac2af1a68a654639d0eb5e01b3e8dc297 Author: metincansiper
[PathwayCommons/factoid] 1e75e2: Remove the organism dropdown when there are no alt...
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 1e75e29f015377fe759b393da5ce1b0f63b7ae3f https://github.com/PathwayCommons/factoid/commit/1e75e29f015377fe759b393da5ce1b0f63b7ae3f Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/client/components/element-info/entity-info.js Log Message: --- Remove the organism dropdown when there are no alternative organism matches : Removes case where a dropdown with only 'Other' is displayed. Commit: 3c1fde47b4aa36ec66188ec55f986a3480c28f60 https://github.com/PathwayCommons/factoid/commit/3c1fde47b4aa36ec66188ec55f986a3480c28f60 Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/client/components/element-info/entity-info.js Log Message: --- Hide the organism entry in the manual match mode for grounding Commit: bd4df1e41854ecd82aa99f7a418977db736b4501 https://github.com/PathwayCommons/factoid/commit/bd4df1e41854ecd82aa99f7a418977db736b4501 Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/client/components/element-info/entity-info.js Log Message: --- Change 'Current match' label to 'Selected' in manual match mode for grounding : Avoids overlap Commit: 2496c5f459e51b7843b6d34eab91a252b5e3a6ba https://github.com/PathwayCommons/factoid/commit/2496c5f459e51b7843b6d34eab91a252b5e3a6ba Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/client/components/element-info/entity-info.js Log Message: --- Use the selected grounding as the top-level organism dropdown ID, if possible : Removes the case where the dropdown resets to the top entry, when a non-first 'Which p53?' value is selected. Commit: 96e6d539dbdeb0a893a46ebad02220d4999b1a59 https://github.com/PathwayCommons/factoid/commit/96e6d539dbdeb0a893a46ebad02220d4999b1a59 Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/styles/element-info/entity-info.css Log Message: --- Increase spacing between synonyms : Increases visual separation to ease the visual identification of where a synonym starts and ends. Commit: 194043930023f359aac8767b50971f7ec3a5ffd1 https://github.com/PathwayCommons/factoid/commit/194043930023f359aac8767b50971f7ec3a5ffd1 Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/client/components/element-info/entity-info.js M src/styles/element-info/entity-info.css Log Message: --- Merge pull request #897 from PathwayCommons/org-dropdown-etc Org dropdown etc. Compare: https://github.com/PathwayCommons/factoid/compare/57b5929ccd76...194043930023 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/57b592-194043%40github.com.
[PathwayCommons/factoid] 1e75e2: Remove the organism dropdown when there are no alt...
Branch: refs/heads/org-dropdown-etc Home: https://github.com/PathwayCommons/factoid Commit: 1e75e29f015377fe759b393da5ce1b0f63b7ae3f https://github.com/PathwayCommons/factoid/commit/1e75e29f015377fe759b393da5ce1b0f63b7ae3f Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/client/components/element-info/entity-info.js Log Message: --- Remove the organism dropdown when there are no alternative organism matches : Removes case where a dropdown with only 'Other' is displayed. Commit: 3c1fde47b4aa36ec66188ec55f986a3480c28f60 https://github.com/PathwayCommons/factoid/commit/3c1fde47b4aa36ec66188ec55f986a3480c28f60 Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/client/components/element-info/entity-info.js Log Message: --- Hide the organism entry in the manual match mode for grounding Commit: bd4df1e41854ecd82aa99f7a418977db736b4501 https://github.com/PathwayCommons/factoid/commit/bd4df1e41854ecd82aa99f7a418977db736b4501 Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/client/components/element-info/entity-info.js Log Message: --- Change 'Current match' label to 'Selected' in manual match mode for grounding : Avoids overlap Commit: 2496c5f459e51b7843b6d34eab91a252b5e3a6ba https://github.com/PathwayCommons/factoid/commit/2496c5f459e51b7843b6d34eab91a252b5e3a6ba Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/client/components/element-info/entity-info.js Log Message: --- Use the selected grounding as the top-level organism dropdown ID, if possible : Removes the case where the dropdown resets to the top entry, when a non-first 'Which p53?' value is selected. Commit: 96e6d539dbdeb0a893a46ebad02220d4999b1a59 https://github.com/PathwayCommons/factoid/commit/96e6d539dbdeb0a893a46ebad02220d4999b1a59 Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/styles/element-info/entity-info.css Log Message: --- Increase spacing between synonyms : Increases visual separation to ease the visual identification of where a synonym starts and ends. Compare: https://github.com/PathwayCommons/factoid/compare/1e75e29f0153%5E...96e6d539dbde -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/org-dropdown-etc/00-96e6d5%40github.com.
[PathwayCommons/factoid] 5526dd: Add interactions filter based on `isNovel()` and a...
Branch: refs/heads/email-rel-pprs Home: https://github.com/PathwayCommons/factoid Commit: 5526dd7d789c0540c3d690a21e57de524f3a002c https://github.com/PathwayCommons/factoid/commit/5526dd7d789c0540c3d690a21e57de524f3a002c Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/server/routes/api/document/index.js Log Message: --- Add interactions filter based on `isNovel()` and add guard within `emailRelatedPaperAuthors()` re. `doc.relatedPapersNotified()` -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/email-rel-pprs/88fab2-5526dd%40github.com.
[PathwayCommons/factoid] b6623c: Use `logger` to remove linting warning in preparat...
Branch: refs/heads/email-rel-pprs Home: https://github.com/PathwayCommons/factoid Commit: b6623cf93e3b0bdf1b798efc4d93c5b246bc2eec https://github.com/PathwayCommons/factoid/commit/b6623cf93e3b0bdf1b798efc4d93c5b246bc2eec Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/util/email.js Log Message: --- Use `logger` to remove linting warning in preparation for merging Commit: fbbef392e87797f9b89f7bcf3137af0ea2b4dea1 https://github.com/PathwayCommons/factoid/commit/fbbef392e87797f9b89f7bcf3137af0ea2b4dea1 Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/server/routes/api/document/index.js Log Message: --- Set `doc.relatedPapersNotified()` flag Commit: bf0f241733ea2bcdfecb1524128a28bea5507d8d https://github.com/PathwayCommons/factoid/commit/bf0f241733ea2bcdfecb1524128a28bea5507d8d Author: Max Franz Date: 2020-11-10 (Tue, 10 Nov 2020) Changed paths: M src/config.js M src/util/email.js Log Message: --- Set template ID Compare: https://github.com/PathwayCommons/factoid/compare/827d70be7be7...bf0f241733ea -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/email-rel-pprs/827d70-bf0f24%40github.com.
[PathwayCommons/factoid] 6e972b: Add LICENSE file (MIT)
Branch: refs/heads/iss893_license Home: https://github.com/PathwayCommons/factoid Commit: 6e972b289a9407f5be792a54ef8043ddcef6313d https://github.com/PathwayCommons/factoid/commit/6e972b289a9407f5be792a54ef8043ddcef6313d Author: Max Franz Date: 2020-11-04 (Wed, 04 Nov 2020) Changed paths: A LICENSE Log Message: --- Add LICENSE file (MIT) -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/iss893_license/2f2e4a-6e972b%40github.com.
[PathwayCommons/factoid] e300e9: Remove the date from the carousel entries
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: e300e9f7f47f80a67a0907126a64db6f35705460 https://github.com/PathwayCommons/factoid/commit/e300e9f7f47f80a67a0907126a64db6f35705460 Author: Max Franz Date: 2020-10-29 (Thu, 29 Oct 2020) Changed paths: M src/styles/carousel.css Log Message: --- Remove the date from the carousel entries Commit: 0a14cdcaa20c6c65cca6994815ec6c933fda7b78 https://github.com/PathwayCommons/factoid/commit/0a14cdcaa20c6c65cca6994815ec6c933fda7b78 Author: Max Franz Date: 2020-10-30 (Fri, 30 Oct 2020) Changed paths: M src/styles/carousel.css Log Message: --- Merge pull request #890 from PathwayCommons/carousel-rm-date Remove the date from the carousel entries Compare: https://github.com/PathwayCommons/factoid/compare/54313112e94c...0a14cdcaa20c -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/543131-0a14cd%40github.com.
[PathwayCommons/factoid] e300e9: Remove the date from the carousel entries
Branch: refs/heads/carousel-rm-date Home: https://github.com/PathwayCommons/factoid Commit: e300e9f7f47f80a67a0907126a64db6f35705460 https://github.com/PathwayCommons/factoid/commit/e300e9f7f47f80a67a0907126a64db6f35705460 Author: Max Franz Date: 2020-10-29 (Thu, 29 Oct 2020) Changed paths: M src/styles/carousel.css Log Message: --- Remove the date from the carousel entries -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/carousel-rm-date/00-e300e9%40github.com.
[PathwayCommons/factoid] d378c7: During bulk export skip the files where the conver...
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: d378c77b98dbb17b610fb8d7cd469d05b6f5d9b6 https://github.com/PathwayCommons/factoid/commit/d378c77b98dbb17b610fb8d7cd469d05b6f5d9b6 Author: metincansiper Date: 2020-10-27 (Tue, 27 Oct 2020) Changed paths: M src/server/routes/api/document/export.js M src/util/document.js Log Message: --- During bulk export skip the files where the conversion is failing and give an error message summarizing the case. Commit: ac70b70206ab37b3c98853b2992efdc0d3b35b25 https://github.com/PathwayCommons/factoid/commit/ac70b70206ab37b3c98853b2992efdc0d3b35b25 Author: Max Franz Date: 2020-10-29 (Thu, 29 Oct 2020) Changed paths: M src/server/routes/api/document/export.js M src/util/document.js Log Message: --- Merge pull request #885 from PathwayCommons/zip_error_handle During bulk export skip the files where the conversion is failing Compare: https://github.com/PathwayCommons/factoid/compare/c3d3712d24d2...ac70b70206ab -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/c3d371-ac70b7%40github.com.
[PathwayCommons/factoid] 715ede: Related papers notification
Branch: refs/heads/email-rel-pprs Home: https://github.com/PathwayCommons/factoid Commit: 715ede09df6219cec28ba2f54961d86a2a32bac1 https://github.com/PathwayCommons/factoid/commit/715ede09df6219cec28ba2f54961d86a2a32bac1 Author: Max Franz Date: 2020-10-28 (Wed, 28 Oct 2020) Changed paths: M src/config.js M src/model/document/document.js M src/server/routes/api/document/index.js M src/util/email.js Log Message: --- Related papers notification Details: - This is currently a prototype. - A new email template type is defined as `relatedPaperNotification`. - The emails are triggered whenever the related papers are updated for a document. - A new metadata field is available on a document. `doc.relatedPapersNotified()` can be used to set or get whether the notifications have been sent. This prevents duplicates. - Novel interactions are an optional enhancement in the emails: An author can receive an email whether or not the originating factoid has a novel interaction. However, if there is a novel interaction, this should be mentioned in the email. - Currently, only notifications are sent to the terminal. The emails are disabled until the template is set up. - Action items are marked by `// TODO RPM` Action items: - [ ] Add a template to Mailjet (@jvwong), based on our email document on Google Docs. - [ ] Reuse our Indra querying code to determine whether there is a novel interaction -- i.e. an interaction that has zero results in Indra (@metincansiper). - [ ] Verify that our emails send correctly on unstable. We'll temporary set unstable to send these notifications to Max and Jeff (@maxkfranz @jvwong). - [ ] Finalise the email template text (@maxkfranz). - [ ] Research the feasibility of the bonus 'factoidable' nudge: Can we determine using AI whether a paper is a good candidate for Biofactoid? Ref. : Novel interaction notification #858 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/email-rel-pprs/00-715ede%40github.com.
[cytoscape/cytoscape.js]
Branch: refs/tags/v3.16.3 Home: https://github.com/cytoscape/cytoscape.js -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/tags/v3.16.3/00-bbbcb8%40github.com.
[cytoscape/cytoscape.js] e5df11: Build 3.16.3
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: e5df11a10eda560863daa9a77c60afb79ef38a57 https://github.com/cytoscape/cytoscape.js/commit/e5df11a10eda560863daa9a77c60afb79ef38a57 Author: Max Franz Date: 2020-10-28 (Wed, 28 Oct 2020) Changed paths: M .size-snapshot.json M dist/cytoscape.cjs.js M dist/cytoscape.esm.js M dist/cytoscape.esm.min.js M dist/cytoscape.min.js M dist/cytoscape.umd.js M documentation/index.html M documentation/js/cytoscape.min.js Log Message: --- Build 3.16.3 Commit: 259185256ecc6c8181e9e3770a8a67dbaaee699c https://github.com/cytoscape/cytoscape.js/commit/259185256ecc6c8181e9e3770a8a67dbaaee699c Author: Max Franz Date: 2020-10-28 (Wed, 28 Oct 2020) Changed paths: M package-lock.json M package.json Log Message: --- 3.16.3 Compare: https://github.com/cytoscape/cytoscape.js/compare/613b00cd0714...259185256ecc -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/613b00-259185%40github.com.
[cytoscape/cytoscape.js] 51681f: Updates
Branch: refs/heads/gh-pages Home: https://github.com/cytoscape/cytoscape.js Commit: 51681f31342ff6183c4febe4e49d4635df65ac7a https://github.com/cytoscape/cytoscape.js/commit/51681f31342ff6183c4febe4e49d4635df65ac7a Author: Max Franz Date: 2020-10-28 (Wed, 28 Oct 2020) Changed paths: M index.html M js/cytoscape.min.js M md/extensions.md M md/intro.md M md/links.md Log Message: --- Updates -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/gh-pages/806ab7-51681f%40github.com.
[cytoscape/cytoscape.js]
Branch: refs/tags/v3.15.4 Home: https://github.com/cytoscape/cytoscape.js -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/tags/v3.15.4/00-9ed8f2%40github.com.
[cytoscape/cytoscape.js] e9e16a: Disable docs publishing for 3.15.x
Branch: refs/heads/3.15.x Home: https://github.com/cytoscape/cytoscape.js Commit: e9e16a99afb632d01b2c854a54c2bd83fd64706c https://github.com/cytoscape/cytoscape.js/commit/e9e16a99afb632d01b2c854a54c2bd83fd64706c Author: Max Franz Date: 2020-10-28 (Wed, 28 Oct 2020) Changed paths: M package.json Log Message: --- Disable docs publishing for 3.15.x Commit: e45880d5b76b05e9286b48324f011bc8315aff63 https://github.com/cytoscape/cytoscape.js/commit/e45880d5b76b05e9286b48324f011bc8315aff63 Author: Max Franz Date: 2020-10-28 (Wed, 28 Oct 2020) Changed paths: M .size-snapshot.json M dist/cytoscape.cjs.js M dist/cytoscape.esm.js M dist/cytoscape.esm.min.js M dist/cytoscape.min.js M dist/cytoscape.umd.js M documentation/js/cytoscape.min.js Log Message: --- Build 3.15.4 Commit: fbf005dd92c075bc815bcfa746b3b60e69001961 https://github.com/cytoscape/cytoscape.js/commit/fbf005dd92c075bc815bcfa746b3b60e69001961 Author: Max Franz Date: 2020-10-28 (Wed, 28 Oct 2020) Changed paths: M package-lock.json M package.json Log Message: --- 3.15.4 Compare: https://github.com/cytoscape/cytoscape.js/compare/d9c451890588...fbf005dd92c0 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/3.15.x/d9c451-fbf005%40github.com.
[cytoscape/cytoscape.js] b06b3c: Add 3.15.4 and 3.16.3 to the list of releases in t...
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: b06b3c3b0318d545427a220ff040cebf0bdffbc2 https://github.com/cytoscape/cytoscape.js/commit/b06b3c3b0318d545427a220ff040cebf0bdffbc2 Author: Max Franz Date: 2020-10-28 (Wed, 28 Oct 2020) Changed paths: M documentation/md/intro.md Log Message: --- Add 3.15.4 and 3.16.3 to the list of releases in the docs -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/e6d9b6-b06b3c%40github.com.
[cytoscape/cytoscape.js] 613b00: Add 3.15.4 and 3.16.3 to the list of releases in t...
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: 613b00cd07143d4ef96a1c8fadc7aed4b0c26e37 https://github.com/cytoscape/cytoscape.js/commit/613b00cd07143d4ef96a1c8fadc7aed4b0c26e37 Author: Max Franz Date: 2020-10-28 (Wed, 28 Oct 2020) Changed paths: M documentation/md/intro.md Log Message: --- Add 3.15.4 and 3.16.3 to the list of releases in the docs -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/8e6758-613b00%40github.com.
[cytoscape/cytoscape.js] f34b8c: Merge pull request #2762 from msalihaltun/bugfix/e...
Branch: refs/heads/3.15.x Home: https://github.com/cytoscape/cytoscape.js Commit: f34b8c3ef036ddd248f365b553799897c1f3671b https://github.com/cytoscape/cytoscape.js/commit/f34b8c3ef036ddd248f365b553799897c1f3671b Author: Max Franz Date: 2020-10-28 (Wed, 28 Oct 2020) Changed paths: M src/extensions/renderer/base/coord-ele-math/labels.js Log Message: --- Merge pull request #2762 from msalihaltun/bugfix/ellipsis-labels Change ellipsis label logic Commit: d9c4518905883a62ec19c69ee2f0e59eac3c958e https://github.com/cytoscape/cytoscape.js/commit/d9c4518905883a62ec19c69ee2f0e59eac3c958e Author: Max Franz Date: 2020-10-28 (Wed, 28 Oct 2020) Changed paths: M src/extensions/renderer/base/load-listeners.js Log Message: --- Merge pull request #2764 from blazespinnaker/unstable Allow eles.panify() to work with compound nodes #2759 Compare: https://github.com/cytoscape/cytoscape.js/compare/97ece600abbb...d9c451890588 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/3.15.x/97ece6-d9c451%40github.com.
[cytoscape/cytoscape.js] 8e6758: Merge pull request #2764 from blazespinnaker/unstable
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: 8e67584ee9d5ff7876eae836ecb29d908b4d603e https://github.com/cytoscape/cytoscape.js/commit/8e67584ee9d5ff7876eae836ecb29d908b4d603e Author: Max Franz Date: 2020-10-28 (Wed, 28 Oct 2020) Changed paths: M src/extensions/renderer/base/load-listeners.js Log Message: --- Merge pull request #2764 from blazespinnaker/unstable Allow eles.panify() to work with compound nodes #2759 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/20a651-8e6758%40github.com.
[cytoscape/cytoscape.js] 6bc290: Allow ele.panify() to work with compound nodes #2759
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 6bc290b038d09c21046038cc07e5005e0fb17102 https://github.com/cytoscape/cytoscape.js/commit/6bc290b038d09c21046038cc07e5005e0fb17102 Author: blazespinnaker Date: 2020-10-20 (Tue, 20 Oct 2020) Changed paths: M src/extensions/renderer/base/load-listeners.js Log Message: --- Allow ele.panify() to work with compound nodes #2759 Commit: e6d9b655fc2f76111f3d49657ec61f60a192e313 https://github.com/cytoscape/cytoscape.js/commit/e6d9b655fc2f76111f3d49657ec61f60a192e313 Author: Max Franz Date: 2020-10-28 (Wed, 28 Oct 2020) Changed paths: M src/extensions/renderer/base/load-listeners.js Log Message: --- Merge pull request #2764 from blazespinnaker/unstable Allow eles.panify() to work with compound nodes #2759 Compare: https://github.com/cytoscape/cytoscape.js/compare/7416be1251ec...e6d9b655fc2f -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/7416be-e6d9b6%40github.com.
[PathwayCommons/factoid] 8f63b3: Friendlier message for editors submit
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 8f63b3883edcf9e4976590ea8cc7f71d975eef4f https://github.com/PathwayCommons/factoid/commit/8f63b3883edcf9e4976590ea8cc7f71d975eef4f Author: Jeffrey Wong Date: 2020-10-26 (Mon, 26 Oct 2020) Changed paths: M src/client/components/tasks.js M src/styles/tasks.css Log Message: --- Friendlier message for editors submit Commit: 80fffdc11862e99bbdc2a4c764ffb9032333537d https://github.com/PathwayCommons/factoid/commit/80fffdc11862e99bbdc2a4c764ffb9032333537d Author: Jeffrey Wong Date: 2020-10-26 (Mon, 26 Oct 2020) Changed paths: M src/client/components/tasks.js Log Message: --- Warning text Commit: c3d3712d24d244ff8219868661e097234f81a4f5 https://github.com/PathwayCommons/factoid/commit/c3d3712d24d244ff8219868661e097234f81a4f5 Author: Max Franz Date: 2020-10-26 (Mon, 26 Oct 2020) Changed paths: M src/client/components/tasks.js M src/styles/tasks.css Log Message: --- Merge pull request #884 from PathwayCommons/iss861_warnings-nicer Friendlier message for editor Task warnings Compare: https://github.com/PathwayCommons/factoid/compare/6a0c27a9065f...c3d3712d24d2 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/6a0c27-c3d371%40github.com.
[PathwayCommons/factoid] 1c1a22: Fixed a typo in effect of deubiquitination interac...
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 1c1a2292dd05b344a5e55a9b848968c0ed081c3a https://github.com/PathwayCommons/factoid/commit/1c1a2292dd05b344a5e55a9b848968c0ed081c3a Author: metincansiper Date: 2020-10-16 (Fri, 16 Oct 2020) Changed paths: M src/model/element/interaction-type/deubiquitination.js Log Message: --- Fixed a typo in effect of deubiquitination interaction type Commit: 6a0c27a9065f2d7d30e3b5a0bded29446a3f https://github.com/PathwayCommons/factoid/commit/6a0c27a9065f2d7d30e3b5a0bded29446a3f Author: Max Franz Date: 2020-10-21 (Wed, 21 Oct 2020) Changed paths: M src/model/element/interaction-type/deubiquitination.js Log Message: --- Merge pull request #883 from PathwayCommons/deubiquitination_typo Fixed a typo in effect of deubiquitination interaction type Compare: https://github.com/PathwayCommons/factoid/compare/4992a35fdf1e...6a0c27a9065f -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/unstable/4992a3-6a0c27%40github.com.
[cytoscape/cytoscape.js] 7416be: Merge pull request #2763 from joliroot/all-benchmarks
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: 7416be1251ec9521c997cdee4bafc601b064c37b https://github.com/cytoscape/cytoscape.js/commit/7416be1251ec9521c997cdee4bafc601b064c37b Author: Max Franz Date: 2020-10-19 (Mon, 19 Oct 2020) Changed paths: M package.json Log Message: --- Merge pull request #2763 from joliroot/all-benchmarks "npm run benchmark" runs all benchmarks -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/ea1adc-7416be%40github.com.
[cytoscape/cytoscape.js] 3a399e: npm run benchmark runs all benchmarks
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: 3a399e71f986682db6ad0ea50685d27bdfcc3c84 https://github.com/cytoscape/cytoscape.js/commit/3a399e71f986682db6ad0ea50685d27bdfcc3c84 Author: joliroot Date: 2020-10-18 (Sun, 18 Oct 2020) Changed paths: M package.json Log Message: --- npm run benchmark runs all benchmarks Commit: 20a651d492ea21dd2cdf594c3b4147bfaedbaaf4 https://github.com/cytoscape/cytoscape.js/commit/20a651d492ea21dd2cdf594c3b4147bfaedbaaf4 Author: Max Franz Date: 2020-10-19 (Mon, 19 Oct 2020) Changed paths: M package.json Log Message: --- Merge pull request #2763 from joliroot/all-benchmarks "npm run benchmark" runs all benchmarks Compare: https://github.com/cytoscape/cytoscape.js/compare/5742ae1c46b1...20a651d492ea -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/5742ae-20a651%40github.com.
[cytoscape/cytoscape.js] ea1adc: Merge pull request #2762 from msalihaltun/bugfix/e...
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: ea1adca45c6a3e9316def93321f0456c1b17fbc8 https://github.com/cytoscape/cytoscape.js/commit/ea1adca45c6a3e9316def93321f0456c1b17fbc8 Author: Max Franz Date: 2020-10-19 (Mon, 19 Oct 2020) Changed paths: M src/extensions/renderer/base/coord-ele-math/labels.js Log Message: --- Merge pull request #2762 from msalihaltun/bugfix/ellipsis-labels Change ellipsis label logic -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/e45bdf-ea1adc%40github.com.
[cytoscape/cytoscape.js] 985c9a: Change ellipsis label logic
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: 985c9a71f2ba80bbd9314f251aacb0754ebba264 https://github.com/cytoscape/cytoscape.js/commit/985c9a71f2ba80bbd9314f251aacb0754ebba264 Author: Salih Altun Date: 2020-10-15 (Thu, 15 Oct 2020) Changed paths: M src/extensions/renderer/base/coord-ele-math/labels.js Log Message: --- Change ellipsis label logic - Fixes cytoscape/cytoscape.js#2761 - New logic will first test if the full label fits in the node, if it does, use the full label. Otherwise, the old logic will apply since we know we are going to be using ellipsis (label doesn't fit). Commit: 5742ae1c46b1ffcff19610494180473341af01bb https://github.com/cytoscape/cytoscape.js/commit/5742ae1c46b1ffcff19610494180473341af01bb Author: Max Franz Date: 2020-10-19 (Mon, 19 Oct 2020) Changed paths: M src/extensions/renderer/base/coord-ele-math/labels.js Log Message: --- Merge pull request #2762 from msalihaltun/bugfix/ellipsis-labels Change ellipsis label logic Compare: https://github.com/cytoscape/cytoscape.js/compare/b0c928645031...5742ae1c46b1 -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/b0c928-5742ae%40github.com.
[cytoscape/cytoscape.js] e45bdf: Add `cosep` layout to the docs
Branch: refs/heads/unstable Home: https://github.com/cytoscape/cytoscape.js Commit: e45bdf8889441b990d75ecd8259ade2e480bb1be https://github.com/cytoscape/cytoscape.js/commit/e45bdf8889441b990d75ecd8259ade2e480bb1be Author: Max Franz Date: 2020-10-14 (Wed, 14 Oct 2020) Changed paths: M README.md M documentation/md/extensions.md M documentation/md/links.md Log Message: --- Add `cosep` layout to the docs -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/unstable/f02c34-e45bdf%40github.com.
[cytoscape/cytoscape.js] b0c928: Add `cosep` layout to the docs
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape.js Commit: b0c9286450318301ca394fb8dbeed87a1328350d https://github.com/cytoscape/cytoscape.js/commit/b0c9286450318301ca394fb8dbeed87a1328350d Author: Max Franz Date: 2020-10-14 (Wed, 14 Oct 2020) Changed paths: M README.md M documentation/md/extensions.md M documentation/md/links.md Log Message: --- Add `cosep` layout to the docs -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-cvs+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape.js/push/refs/heads/master/74b27f-b0c928%40github.com.
