Re: [deal.II] Step-17 -PETSc () -- MPI -- Versions Conflict on Mac
Do you have a suggestion for how to address it? Thanks! On Sunday, October 24, 2021 at 8:28:21 PM UTC-5 Wolfgang Bangerth wrote: > On 10/23/21 1:01 PM, Ahmed Galal wrote: > > PETSc Error --- Application was linked against both OpenMPI and MPICH > based > > MPI libraries and will not run correctly > > This is the error you need to address. > > Best > W. > > > > -- > > Wolfgang Bangerth email: bang...@colostate.edu > www: http://www.math.colostate.edu/~bangerth/ > > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/c27b47d4-24df-44db-8fcf-dcd6360d766dn%40googlegroups.com.
[deal.II] Step-17 -PETSc () -- MPI -- Versions Conflict on Mac
I tried to run Step-17 but I got the following error. Given I have two versions of PETSc. I use the other one for another software. I googled and found that the issue is solved by commenting out the line "ADD_FLAGS(DEAL_II_LINKER_FLAGS "-fuse-ld=gold")" in "cmake/checks/check_01_compiler_features.cmake", make test, worked. --- https://groups.google.com/u/1/g/dealii/c/JxUOyd_4eFM?pli=1https://groups.google.com/u/1/g/dealii/c/JxUOyd_4eFM?pli=1 --- Any suggestions for how to get around that in the new version of DealII.9.3 as I could not find a .cmake similar file to edit? Thanks in advance! Ahmed Error: PETSc Error --- Application was linked against both OpenMPI and MPICH based MPI libraries and will not run correctly [] *** Process received signal *** [] Signal: Segmentation fault: 11 (11) [] Signal code: Address not mapped (1) [] Failing at address: 0x68 [] [ 0] 0 libsystem_platform.dylib0x7fff2041cd7d _sigtramp + 29 [] [ 1] 0 ??? 0x60b9d791 0x0 + 1622792081 [] [ 2] 0 libsystem_c.dylib 0x7fff202edfcc vfprintf_l + 28 [] [ 3] 0 libsystem_c.dylib 0x7fff202e69a2 fprintf + 160 [] [ 4] 0 libpetsc.3.15.dylib 0x00014c224f0d PetscVFPrintfDefault + 685 [ 5] 0 libpetsc.3.15.dylib 0x00014c2280d6 PetscFPrintf + 726 [ 6] 0 libpetsc.3.15.dylib 0x00014c21d537 PetscErrorPrintfDefault + 375 [ 7] 0 libpetsc.3.15.dylib 0x00014c21d66a PetscTraceBackErrorHandler + 154 [ 8] 0 libpetsc.3.15.dylib 0x00014c21713c PetscError + 716 [ 9] 0 libslepc.3.15.dylib 0x00014bc9cc8c SlepcInitialize + 428 [10] 0 libdeal_II.g.9.3.0.dylib0x0001151ae627 _ZN6dealii9Utilities3MPI16MPI_InitFinalizeC2ERiRPPcj + 135 [11] 0 libdeal_II.g.9.3.0.dylib0x0001151aece9 _ZN6dealii9Utilities3MPI16MPI_InitFinalizeC1ERiRPPcj + 9 [12] 0 step-17 0x00010f244892 main + 82 [13] 0 libdyld.dylib 0x7fff203f2f3d start + 1 [14] 0 ??? 0x0001 0x0 + 1 *** End of error message *** make[3]: *** [CMakeFiles/run] Segmentation fault: 11 make[2]: *** [CMakeFiles/run.dir/all] Error 2 make[1]: *** [CMakeFiles/run.dir/rule] Error 2 make: *** [run] Error 2 bash-3.2$ -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/3084a484-f33e-4f0a-8832-ea902fd81e8dn%40googlegroups.com.
Re: [deal.II] Missing (block_sparse_matrix)
Thanks Daniel, for the suggestion! Ahmed On Friday, October 22, 2021 at 8:37:08 AM UTC-5 d.arnd...@gmail.com wrote: > Ahmed, > > The file and the respective classes were deleted in > https://github.com/dealii/dealii/pull/9761 and deprecated in > https://github.com/dealii/dealii/pull/5352. > If you need to replace BlockMatrixArray, you should have a look at the > documentation in the latter pull request to use BlockLinearOperator( > https://www.dealii.org/current/doxygen/deal.II/classBlockLinearOperator.html) > instead. > > Best, > Daniel > > Am Fr., 22. Okt. 2021 um 04:29 Uhr schrieb Ahmed Galal < > ahmed.g...@gmail.com>: > >> I am trying to compile a deal.ii code but it failed because of >> missing . >> >> I do not know how to include it in the recent dealii version. I found it >> available deal.ii 8.5.0. >> >> Thanks in advance! >> >> >> -- >> The deal.II project is located at http://www.dealii.org/ >> For mailing list/forum options, see >> https://groups.google.com/d/forum/dealii?hl=en >> --- >> You received this message because you are subscribed to the Google Groups >> "deal.II User Group" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to dealii+un...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/dealii/442d1ff2-fa5d-4d09-bbd1-c188f0d467bbn%40googlegroups.com >> >> <https://groups.google.com/d/msgid/dealii/442d1ff2-fa5d-4d09-bbd1-c188f0d467bbn%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/0cd0c624-20a5-488e-8b8a-5e59feb87010n%40googlegroups.com.
[deal.II] Missing (block_sparse_matrix)
I am trying to compile a deal.ii code but it failed because of missing . I do not know how to include it in the recent dealii version. I found it available deal.ii 8.5.0. Thanks in advance! -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/442d1ff2-fa5d-4d09-bbd1-c188f0d467bbn%40googlegroups.com.
