Fw: Re: Problems installing amd64 with Supermicro motherboard

2008-04-15 Thread Francesco Pietra

Quickly added:
I loaded Knoppix 5.3.1 (lenny, kernel 2.6.24.4) networking OK.

When loading etch from the HDDD, command

startx

does not start X (it worked on previous machine). Errors
no scree found
X10 fatal IO error 104 on X server.

I use the GNU driver, no nvidia driver for X.

regards
francesco


 Unfortunately I have duties at the moment to investigate deeper this issue.

--- On Mon, 4/14/08, Francesco Pietra [EMAIL PROTECTED] wrote:

 From: Francesco Pietra [EMAIL PROTECTED]
 Subject: Re: Problems installing amd64 with Supermicro motherboard
 To: Lennart Sorensen [EMAIL PROTECTED]
 Cc: Giacomo Mulas [EMAIL PROTECTED], debian-amd64@lists.debian.org, A J 
 Stiles [EMAIL PROTECTED]
 Date: Monday, April 14, 2008, 11:13 AM
 Hi
 reported at the bottom the output of 
 
 dmesg  gsemd
 
 
 --- On Mon, 4/14/08, Lennart Sorensen
 [EMAIL PROTECTED] wrote:
 
  From: Lennart Sorensen
 [EMAIL PROTECTED]
  Subject: Re: Problems installing amd64 with Supermicro
 motherboard
  To: Francesco Pietra
 [EMAIL PROTECTED]
  Cc: Giacomo Mulas
 [EMAIL PROTECTED], debian-amd64@lists.debian.org,
 A J Stiles [EMAIL PROTECTED]
  Date: Monday, April 14, 2008, 8:47 AM
  On Sat, Apr 12, 2008 at 10:17:03AM -0700, Francesco
 Pietra
  wrote:
   Hi
   I finally succeeded in entering BIOS (although
 the
  Intel Boot Agent is a pest that has still to be
 eliminated;
  thanks to ael for suggesting Freedos: not
 yet
  tried, 
 
 
 Se please my previous answer: no chance to remove the Boot
 Agent. 
 
 I first wanted to configure BIOS at least where I am
  sure what I  am doing).
   
   In configuring the CPU (4 dual-core amd 875 Rev
 E1:
  cache L1 256KB, cache L2 2048KB) it is not clear to me
 how
  to set the MTRR mapping. The choice is between
  continuous (which makes the PCI hole
  noncacheable) and discrete (which places
 the
  PCI hole beloww the 4GB boundary).
   
   Oddly, the System Memory is reported 20480MB
 (which
  agrees with the result of command
   
   $ cat /proc/meminfo
   
   when Linux is launched. Actually, I installed
 aside
  each socket 2GB + 2GB + 1G + 1G Kingston DDR1 ECC, so
 I
  expected a total 24GB. All these memories were OK on a
 Tyan
  S2895, and insertion on the Supermicro H8QCE board
 seems
  correct. I did myself all the management of the 2GB,
 and I
  was carefully grounded.  Should the filling of the
 slots be
  different?
  
  Is all the RAM the same speed?  Is it all ECC?  Is it
 all
  buffered?
 
 
 Like in the case of the CD-ROM, one slot was not well
 fixed. Now OK.
 
  
  The specs for the board seem to indicate it supports
 32GB
  (16 x 2GB) of
  buffered 400MHz DDR, or 64GB (16 x 4GB) of buffered
 333MHz
  DDR.
  
  What happens if you only install the 2GB modules and
 leave
  out the 1GB
  modules?
  
  So out of your 24GB you are only seeing 20GB?
  
  As far as I can tell from the manual the way to
 install the
  ram would
  be:
  
  
  
  CPU3 2GB in 1B
   2GB in 1A
  1GB in 2A1GB in 2B
  1GB in 2B1GB in 2A
  2GB in 1A
  2GB in 1BCPU4
  
  2GB in 1BCPU1
  2GB in 1A
  1GB in 2B1GB in 2A
  1GB in 2A1GB in 2B
   2GB in 1A
  CPU2 2GB in 1B
 
 Ypu are quite correct. In fact this is the order that I set
 after having edited the BIOS. Changing the position of the
 memory slots (or because one was badly fixed, has prevented
 my access to BIOS. It seems inescapable to clear CMOS. To
 this regard I posed the question to Supermicro Europe;
 
 You suggested to clear CMOS by removing the battery and
 shorting the battery socket. This is considered unsafe by
 most people. Why not shortening the JBT1 without removing
 the battery?
 
 They have just answered By shorting the battery
 socket you can be 100% sure the COMS has been cleared
 
 
 
  
  Could you post your 'dmesg' output, to see
 what the
  e820 tables and mtrr
  and such show as well as the kernel reserved memory?
 
 dmesg  dsemd
 
 having loaded amd64 from the raid1 disks that were in use
 in my previous two-socket (dual-core opteron 265) machine.
 As you can see there is no correct driver for the embedded
 Gigabit. I have just got the right drived (module) from
 Supermicro and have to find the right way to load the
 module fro a diskette or usb key with modprobe (I never
 loaded a module before)
 
 Bootdata ok (command line is root=/dev/md2 ro )
 Linux version 2.6.18-3-amd64 (Debian 2.6.18-7)
 ([EMAIL PROTECTED]) (gcc version 4.1.2 20061115 (prerelease)
 (Debian 4.1.1-20)) #1 SMP Mon Dec 4 17:04:37 CET 2006
 BIOS-provided physical RAM map:
  BIOS-e820:  - 0009fc00 (usable)
  BIOS-e820: 0009fc00 - 000a (reserved)
  BIOS-e820: 000e8000 - 0010 (reserved)
  BIOS-e820: 0010 - bfff (usable)
  BIOS-e820: bfff

Re: Fw: Re: Problems installing amd64 with Supermicro motherboard

2008-04-15 Thread Lennart Sorensen
On Tue, Apr 15, 2008 at 12:46:12AM -0700, Francesco Pietra wrote:
 
 Quickly added:
 I loaded Knoppix 5.3.1 (lenny, kernel 2.6.24.4) networking OK.

So the network works with the newer kernel, so it should work with a
direct lenny install.

 When loading etch from the HDDD, command
 
 startx
 
 does not start X (it worked on previous machine). Errors
 no scree found
 X10 fatal IO error 104 on X server.
 
 I use the GNU driver, no nvidia driver for X.

Ehm, doesn't that supermicro board have an ATI video chip?

Try reconfiguring X with dpkg-reconfigure xserver-xorg and let it pick
what it thinks is right.

If you have an nvidia card added in, then I am pretty sure Etch can't
run any 8xxx cards, only 7xxx and lower.  You need lenny for 8xxx series
cards.

-- 
Len Sorensen


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Re: Fw: Re: Problems installing amd64 with Supermicro motherboard

2008-04-15 Thread Francesco Pietra
Hi:
Grat! Please see below


--- On Tue, 4/15/08, Lennart Sorensen [EMAIL PROTECTED] wrote:

 From: Lennart Sorensen [EMAIL PROTECTED]
 Subject: Re: Fw: Re: Problems installing amd64 with Supermicro motherboard
 To: Francesco Pietra [EMAIL PROTECTED]
 Cc: debian64 debian-amd64@lists.debian.org
 Date: Tuesday, April 15, 2008, 7:51 AM
 On Tue, Apr 15, 2008 at 12:46:12AM -0700, Francesco Pietra
 wrote:
  
  Quickly added:
  I loaded Knoppix 5.3.1 (lenny, kernel 2.6.24.4)
 networking OK.
 
 So the network works with the newer kernel, so it should
 work with a
 direct lenny install.
 
  When loading etch from the HDDD, command
  
  startx
  
  does not start X (it worked on previous machine).
 Errors
  no scree found
  X10 fatal IO error 104 on X server.
  
  I use the GNU driver, no nvidia driver for X.
 
 Ehm, doesn't that supermicro board have an ATI video
 chip?
 
 Try reconfiguring X with dpkg-reconfigure xserver-xorg and
 let it pick
 what it thinks is right.


Reconfiguring (accepting automatic detection) worked fine indeed. Thanks. (ATI 
card)

Not only. Now dhclient connects to network!

At this point I can resume molecular dynamics with the machine. However, inf 
still wise to change to lenny, where to learn how to carry out correctly a 
debootstrap? Is it safe to save on another computer /usr/local where amber9 
dock6 dms openmpi-1.2.3 nwchem are installed 

and /opt/intel
where the intel compilers for the above programs are installed?

Thanks for your precious instructions. Actually, I have acknowledged with 
thanks your great help in compiling mpqc with libint in a publication

F. Pietra Why colchicine does not show mutarotation. With M05-2X density 
functional in the realm of tricky natural products J. Phys. Org. Chem. 2007, 
20, 1102-1107

francesco pietra


 
 If you have an nvidia card added in, then I am pretty sure
 Etch can't
 run any 8xxx cards, only 7xxx and lower.  You need lenny
 for 8xxx series
 cards.
 
 -- 
 Len Sorensen


  

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Re: Fw: Re: Problems installing amd64 with Supermicro motherboard

2008-04-15 Thread Lennart Sorensen
On Tue, Apr 15, 2008 at 09:49:02AM -0700, Francesco Pietra wrote:
 Reconfiguring (accepting automatic detection) worked fine indeed. Thanks. 
 (ATI card)
 
 Not only. Now dhclient connects to network!

Odd, not sure how those could be related.

 At this point I can resume molecular dynamics with the machine. However, inf 
 still wise to change to lenny, where to learn how to carry out correctly a 
 debootstrap? Is it safe to save on another computer /usr/local where amber9 
 dock6 dms openmpi-1.2.3 nwchem are installed 

If you have Etch installed, just upgrade normally to Lenny by changing
/etc/apt/sources.list from etch or stable to lenny, then do apt-get
update and apt-get dist-upgrade.

debootstrap often doesn't work reliably except for stable anyhow, so you
would essentially have to debootstrap etch, then dist-upgrade that to
lenny anyhow.

 and /opt/intel
 where the intel compilers for the above programs are installed?
 
 Thanks for your precious instructions. Actually, I have acknowledged with 
 thanks your great help in compiling mpqc with libint in a publication

 F. Pietra Why colchicine does not show mutarotation. With M05-2X density 
 functional in the realm of tricky natural products J. Phys. Org. Chem. 2007, 
 20, 1102-1107

Neat (not that I can actually read it without buying it I guess). :)

-- 
Len Sorensen


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Re: Problems installing amd64 with Supermicro motherboard

2008-04-14 Thread Lennart Sorensen
On Sat, Apr 12, 2008 at 03:56:58PM -0700, Francesco Pietra wrote:
 Hi Giacomo:
 I do have a fast internet connections, though the current installation of 
 amd64 was for a RealTek. On the Supermicro there is an integrated Gigabit, 
 which is not seen by Linux. This also means that I can't scp to the machine 
 and from it, which spoils the possibility offered by running computational 
 programs. Also the CDROM is not seen (by both Linux and BIOS): might it be 
 that the 80-wire ATA 133 cable used is not compatible with the Pioneer 
 DVD-110?

No an 80 wire IDE cable should always work.

 It seems that the needed steps are:
 
 1) Fix the hardware problem of the CDROM

Or someone disabled IDE support in the BIOS.  Or linux doesn't recognize
the IDE controller.

 2) Prevent Intel Boot Agent from initializing (which also takes time)

There should be a BIOS option to turn of network boot support.

 3) Deactivate from BIOS all that is not needed, such as parallel port, 
 COM1/COM2 not to subtract resources.

Usually not a bad idea.

 4) Reinstall amd64, possibly lenny instead of etch (finally, this is not a 
 server, it is a workstation)

On a new board, lenny is much more likely to be successful.

To get in to the BIOS, try just holding you hand on lots of keys on the
keyboard while the system powers up.  Often you can generate a keyboard
error, and it will offer you something like F1 to continue, F2 to enter
setup.  Other keys to enter the BIOS are DEL, INS, F2, F10, F12.  Some
laptops only let you enter the BIOS after a power off, not a reboot, not
sure if any server or desktop systems are like that.

-- 
Len Sorensen


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Re: Problems installing amd64 with Supermicro motherboard

2008-04-14 Thread Lennart Sorensen
On Sat, Apr 12, 2008 at 10:17:03AM -0700, Francesco Pietra wrote:
 Hi
 I finally succeeded in entering BIOS (although the Intel Boot Agent is a pest 
 that has still to be eliminated; thanks to ael for suggesting Freedos: not 
 yet tried, I first wanted to configure BIOS at least where I am sure what I  
 am doing).
 
 In configuring the CPU (4 dual-core amd 875 Rev E1: cache L1 256KB, cache L2 
 2048KB) it is not clear to me how to set the MTRR mapping. The choice is 
 between continuous (which makes the PCI hole noncacheable) and discrete 
 (which places the PCI hole beloww the 4GB boundary).
 
 Oddly, the System Memory is reported 20480MB (which agrees with the result of 
 command
 
 $ cat /proc/meminfo
 
 when Linux is launched. Actually, I installed aside each socket 2GB + 2GB + 
 1G + 1G Kingston DDR1 ECC, so I expected a total 24GB. All these memories 
 were OK on a Tyan S2895, and insertion on the Supermicro H8QCE board seems 
 correct. I did myself all the management of the 2GB, and I was carefully 
 grounded.  Should the filling of the slots be different?

Is all the RAM the same speed?  Is it all ECC?  Is it all buffered?

The specs for the board seem to indicate it supports 32GB (16 x 2GB) of
buffered 400MHz DDR, or 64GB (16 x 4GB) of buffered 333MHz DDR.

What happens if you only install the 2GB modules and leave out the 1GB
modules?

So out of your 24GB you are only seeing 20GB?

As far as I can tell from the manual the way to install the ram would
be:



CPU3 2GB in 1B
 2GB in 1A
1GB in 2A1GB in 2B
1GB in 2B1GB in 2A
2GB in 1A
2GB in 1BCPU4

2GB in 1BCPU1
2GB in 1A
1GB in 2B1GB in 2A
1GB in 2A1GB in 2B
 2GB in 1A
CPU2 2GB in 1B

Could you post your 'dmesg' output, to see what the e820 tables and mtrr
and such show as well as the kernel reserved memory?

-- 
Len Sorensen


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Re: Problems installing amd64 with Supermicro motherboard

2008-04-14 Thread Francesco Pietra
Hi
Sorry for having posted fragmentarily. Some issues (mostly due to my faulty 
doing) have been fixed. Some are still unresolved (I'll post later about your 
second kind mail, I have to find the way to take the dmesg output as the scp to 
my desktop does not work)


--- On Mon, 4/14/08, Lennart Sorensen [EMAIL PROTECTED] wrote:

 From: Lennart Sorensen [EMAIL PROTECTED]
 Subject: Re: Problems installing amd64 with Supermicro motherboard

 To: Francesco Pietra [EMAIL PROTECTED]
 Cc: Giacomo Mulas [EMAIL PROTECTED], debian-amd64@lists.debian.org, A J 
 Stiles [EMAIL PROTECTED]
 Date: Monday, April 14, 2008, 8:30 AM
 On Sat, Apr 12, 2008 at 03:56:58PM -0700, Francesco Pietra
 wrote:
  Hi Giacomo:
  I do have a fast internet connections, though the
 current installation of amd64 was for a RealTek. On the
 Supermicro there is an integrated Gigabit, which is not
 seen by Linux. This also means that I can't scp to the
 machine and from it, which spoils the possibility offered
 by running computational programs. Also the CDROM is not
 seen (by both Linux and BIOS): might it be that the 80-wire
 ATA 133 cable used is not compatible with the Pioneer
 DVD-110?
 
 No an 80 wire IDE cable should always work.


 
  It seems that the needed steps are:
  
  1) Fix the hardware problem of the CDROM
 
 Or someone disabled IDE support in the BIOS.  Or linux
 doesn't recognize
 the IDE controller.

The cable was not perfectly fixed. Now CD-ROM OK.

 
  2) Prevent Intel Boot Agent from initializing (which
 also takes time)
 
 There should be a BIOS option to turn of network boot
 support.


While I was planning to follow Intel's instructions how to prevent their Boot 
Agent to initialize, and wondering how my new SPM system can load DOS or 
FREEDOS, Supermicro Europe has just answered that:

Regarding Intel Boot Agent:
It is not possible to remove or disable the Intel Boot agent other then 
disabling onboard LAN via Jumper.

This seems to be in contrast with what Intel says at:
http://www.intel.com/support/network/adapter/pro100/bootagent/
General Information:

To prevent the Boot Agent from executing, enter your systems BIOS 
configuration and find the boot device order settings. Move the boot agent 
further down the list, preferably after the hard drive or whatever device you 
prefer to boot from.
The Boot Agent will initialize during the system startup, even if it is not the 
first boot device. During the time the initialization screen is displayed, you 
can press Control-S to configure the Boot Agent's internal settings.
To prevent the Boot Agent from even initializing, you can turn it off 
completely. The IntelĀ® Boot Agent can be completely turned off by using the 
IBAUtil.exe DOS utility found in the PROBOOT archive, using the command line 
IBAUTIL - FD (flashdisable).

Incidentally, there is no option  in the AMI BIOS to change the order settings. 
Because of this, may be Supermicro is correct on saying that the Boot Agent 
will always appear at my boots.
 
  3) Deactivate from BIOS all that is not needed, such
 as parallel port, COM1/COM2 not to subtract resources.
 
 Usually not a bad idea.

Actually I have deactivated parallel port only. I was unsure whether 
deactivating serial prevents PS/2 or some other basic device from working.



  4) Reinstall amd64, possibly lenny instead of etch
 (finally, this is not a server, it is a workstation)
 
 On a new board, lenny is much more likely to be successful.

If I succeed in setting the older etch installation on network, I plan to 
complete the task with a debootstrap to lenny. 



 
 To get in to the BIOS, try just holding you hand on lots of
 keys on the
 keyboard while the system powers up.  Often you can
 generate a keyboard
 error, and it will offer you something like F1 to
 continue, F2 to enter
 setup.  Other keys to enter the BIOS are DEL, INS,
 F2, F10, F12.  Some
 laptops only let you enter the BIOS after a power off, not
 a reboot, not
 sure if any server or desktop systems are like that.

As it is AMI, the key is DEL. It worked and I carried out few - absolutely safe 
- modifications to the BIOS settings. Then I rearranged - correctly - the RAM 
modules with the result that all 24GB are detected and the interleaved 
(128-bit) memory conditions are satisfied. Oddly, however, the BIOS can no more 
be accessed, while debian amd64 loads correctly.


Thanks
francesco pietra

 
 -- 
 Len Sorensen
 
 
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 To UNSUBSCRIBE, email to
 [EMAIL PROTECTED]
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Re: Problems installing amd64 with Supermicro motherboard

2008-04-14 Thread Lennart Sorensen
On Mon, Apr 14, 2008 at 10:23:29AM -0700, Francesco Pietra wrote:
 Sorry for having posted fragmentarily. Some issues (mostly due to my faulty 
 doing) have been fixed. Some are still unresolved (I'll post later about your 
 second kind mail, I have to find the way to take the dmesg output as the scp 
 to my desktop does not work)

Make sure openssh-server is installed on the target machine or scp won't
work.

-- 
Len Sorensen


-- 
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Re: Problems installing amd64 with Supermicro motherboard

2008-04-14 Thread Francesco Pietra
Hi
reported at the bottom the output of 

dmesg  gsemd


--- On Mon, 4/14/08, Lennart Sorensen [EMAIL PROTECTED] wrote:

 From: Lennart Sorensen [EMAIL PROTECTED]
 Subject: Re: Problems installing amd64 with Supermicro motherboard
 To: Francesco Pietra [EMAIL PROTECTED]
 Cc: Giacomo Mulas [EMAIL PROTECTED], debian-amd64@lists.debian.org, A J 
 Stiles [EMAIL PROTECTED]
 Date: Monday, April 14, 2008, 8:47 AM
 On Sat, Apr 12, 2008 at 10:17:03AM -0700, Francesco Pietra
 wrote:
  Hi
  I finally succeeded in entering BIOS (although the
 Intel Boot Agent is a pest that has still to be eliminated;
 thanks to ael for suggesting Freedos: not yet
 tried, 


Se please my previous answer: no chance to remove the Boot Agent. 

I first wanted to configure BIOS at least where I am
 sure what I  am doing).
  
  In configuring the CPU (4 dual-core amd 875 Rev E1:
 cache L1 256KB, cache L2 2048KB) it is not clear to me how
 to set the MTRR mapping. The choice is between
 continuous (which makes the PCI hole
 noncacheable) and discrete (which places the
 PCI hole beloww the 4GB boundary).
  
  Oddly, the System Memory is reported 20480MB (which
 agrees with the result of command
  
  $ cat /proc/meminfo
  
  when Linux is launched. Actually, I installed aside
 each socket 2GB + 2GB + 1G + 1G Kingston DDR1 ECC, so I
 expected a total 24GB. All these memories were OK on a Tyan
 S2895, and insertion on the Supermicro H8QCE board seems
 correct. I did myself all the management of the 2GB, and I
 was carefully grounded.  Should the filling of the slots be
 different?
 
 Is all the RAM the same speed?  Is it all ECC?  Is it all
 buffered?


Like in the case of the CD-ROM, one slot was not well fixed. Now OK.

 
 The specs for the board seem to indicate it supports 32GB
 (16 x 2GB) of
 buffered 400MHz DDR, or 64GB (16 x 4GB) of buffered 333MHz
 DDR.
 
 What happens if you only install the 2GB modules and leave
 out the 1GB
 modules?
 
 So out of your 24GB you are only seeing 20GB?
 
 As far as I can tell from the manual the way to install the
 ram would
 be:
 
 
 
 CPU3 2GB in 1B
  2GB in 1A
 1GB in 2A1GB in 2B
 1GB in 2B1GB in 2A
 2GB in 1A
 2GB in 1BCPU4
 
 2GB in 1BCPU1
 2GB in 1A
 1GB in 2B1GB in 2A
 1GB in 2A1GB in 2B
  2GB in 1A
 CPU2 2GB in 1B

Ypu are quite correct. In fact this is the order that I set after having edited 
the BIOS. Changing the position of the memory slots (or because one was badly 
fixed, has prevented my access to BIOS. It seems inescapable to clear CMOS. To 
this regard I posed the question to Supermicro Europe;

You suggested to clear CMOS by removing the battery and shorting the battery 
socket. This is considered unsafe by most people. Why not shortening the JBT1 
without removing the battery?

They have just answered By shorting the battery socket you can be 100% sure 
the COMS has been cleared



 
 Could you post your 'dmesg' output, to see what the
 e820 tables and mtrr
 and such show as well as the kernel reserved memory?

dmesg  dsemd

having loaded amd64 from the raid1 disks that were in use in my previous 
two-socket (dual-core opteron 265) machine. As you can see there is no correct 
driver for the embedded Gigabit. I have just got the right drived (module) from 
Supermicro and have to find the right way to load the module fro a diskette or 
usb key with modprobe (I never loaded a module before)

Bootdata ok (command line is root=/dev/md2 ro )
Linux version 2.6.18-3-amd64 (Debian 2.6.18-7) ([EMAIL PROTECTED]) (gcc version 
4.1.2 20061115 (prerelease) (Debian 4.1.1-20)) #1 SMP Mon Dec 4 17:04:37 CET 
2006
BIOS-provided physical RAM map:
 BIOS-e820:  - 0009fc00 (usable)
 BIOS-e820: 0009fc00 - 000a (reserved)
 BIOS-e820: 000e8000 - 0010 (reserved)
 BIOS-e820: 0010 - bfff (usable)
 BIOS-e820: bfff - bfffe000 (ACPI data)
 BIOS-e820: bfffe000 - c000 (ACPI NVS)
 BIOS-e820: fec0 - fec01000 (reserved)
 BIOS-e820: fee0 - fee01000 (reserved)
 BIOS-e820: ff70 - 0001 (reserved)
 BIOS-e820: 0001 - 00062000 (usable)
DMI 2.3 present.
ACPI: RSDP (v000 ACPIAM) @ 0x000fa1b0
ACPI: RSDT (v001 A M I  OEMRSDT  0x07000631 MSFT 0x0097) @ 
0xbfff
ACPI: FADT (v002 A M I  OEMFACP  0x07000631 MSFT 0x0097) @ 
0xbfff0200
ACPI: MADT (v001 A M I  OEMAPIC  0x07000631 MSFT 0x0097) @ 
0xbfff0390
ACPI: OEMB (v001 A M I  AMI_OEM  0x07000631 MSFT 0x0097) @ 
0xbfffe040
ACPI: SRAT (v001 A M I  OEMSRAT  0x07000631 MSFT 0x0097) @ 
0xbfff5ab0
ACPI: DSDT (v001  1HQC8 1HQC8003 0x0003 INTL

Re: Problems installing amd64 with Supermicro motherboard

2008-04-14 Thread Francesco Pietra



--- On Mon, 4/14/08, Lennart Sorensen [EMAIL PROTECTED] wrote:

 From: Lennart Sorensen [EMAIL PROTECTED]
 Subject: Re: Problems installing amd64 with Supermicro motherboard
 To: Francesco Pietra [EMAIL PROTECTED]
 Cc: Giacomo Mulas [EMAIL PROTECTED], debian-amd64@lists.debian.org, A J 
 Stiles [EMAIL PROTECTED]
 Date: Monday, April 14, 2008, 10:59 AM
 On Mon, Apr 14, 2008 at 10:23:29AM -0700, Francesco Pietra
 wrote:
  Sorry for having posted fragmentarily. Some issues
 (mostly due to my faulty doing) have been fixed. Some are
 still unresolved (I'll post later about your second
 kind mail, I have to find the way to take the dmesg output
 as the scp to my desktop does not work)
 
 Make sure openssh-server is installed on the target machine
 or scp won't
 work.

The server is correct. What is lacking if internet connection (se my mail of a 
few minutes ago) so that things do not pass through the router.

Thanks
francesco
 -- 
 Len Sorensen
 
 
 -- 
 To UNSUBSCRIBE, email to
 [EMAIL PROTECTED]
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Re: Problems installing amd64 with Supermicro motherboard

2008-04-14 Thread Lennart Sorensen
On Mon, Apr 14, 2008 at 11:13:18AM -0700, Francesco Pietra wrote:
 Hi
 reported at the bottom the output of 

So you have the CDROM, and you have all your ram.  So what else was
wrong with it other than the silly netboot agent making bootup take a
while?

-- 
Len Sorensen


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Fw: Re: Problems installing amd64 with Supermicro motherboard

2008-04-13 Thread Francesco Pietra
The CD-ROM issue was solved. Now CD-ROM detected.

Concerning the aperture memory hole reported below, I forgot to mention:

$ dmesg | grep -i memory
your BIOS doesn't leave a aperture memory hole.


As to network, dmesg reports

e1000: eth1: e1000_probe: Intel(R) PRO/1000 Network Connection.


As the raid1 is in order, like my applications (Amber Dock NEChem), is it worth 
while to try recognizing the Gigabit or is it better to reinstall the system? 
With my previous 2-socket system I had no problems in installing etch with 
raid1.

Ciao
francesco



--- On Sat, 4/12/08, Francesco Pietra [EMAIL PROTECTED] wrote:

 From: Francesco Pietra [EMAIL PROTECTED]
 Subject: Fw: Re: Problems installing amd64 with Supermicro motherboard
 To: debian64 debian-amd64@lists.debian.org
 Cc: Giacomo Mulas [EMAIL PROTECTED]
 Date: Saturday, April 12, 2008, 3:04 PM
 Additional info related or not to continuous vs
 discrete and memory problems reported below,
 from running Debian and commanding
 
 # dmesg
 
 
 Checking aperture...
 CPU 0: aperture too small (32 MB)
 No AGP bridge found
 Your BIOS doesn't leave a aperture memory hole
 Please enable the IOMMU option in the BIOS setup
 This costs you 64 MB of RAM
Mapping aperture over 65536 KB of RAM @ 800
 
 
 Memory: 20545780k/22020096k available (1929 kernel code,
 425288k reserved, 864k data, 176 init).
 
 As to peripherals, floppy is detected by both BIOS and
 dmesg, while cdrom is not detected by
 
 $ dmesg
 $ cat /proc/sys/dev/cdrom/info
 $ cat /proc/ide/drivers
 $ cat /proc/scsi/scsi
 
 The DVD Pioneer DVR-110 (which was OK on my previous Tyan
 S2895) was  IDE connected through the 80-wire ATA 133 cable
 furnished with the Supermicro motherboard. Is any jumper
 setting needed?
 
 
 Thanks
 francesco
 
 --- On Sat, 4/12/08, Francesco Pietra
 [EMAIL PROTECTED] wrote:
 
  From: Francesco Pietra [EMAIL PROTECTED]
  Subject: Re: Problems installing amd64 with Supermicro
 motherboard
  To: Giacomo Mulas
 [EMAIL PROTECTED]
  Cc: debian-amd64@lists.debian.org, A J
 Stiles [EMAIL PROTECTED]
  Date: Saturday, April 12, 2008, 10:17 AM
  Hi
  I finally succeeded in entering BIOS (although the
 Intel
  Boot Agent is a pest that has still to be eliminated;
  thanks to ael for suggesting Freedos: not
 yet
  tried, I first wanted to configure BIOS at least where
 I am
  sure what I  am doing).
  
  In configuring the CPU (4 dual-core amd 875 Rev E1:
 cache
  L1 256KB, cache L2 2048KB) it is not clear to me how
 to set
  the MTRR mapping. The choice is between
  continuous (which makes the PCI hole
  noncacheable) and discrete (which places
 the
  PCI hole beloww the 4GB boundary).
  
  Oddly, the System Memory is reported 20480MB (which
 agrees
  with the result of command
  
  $ cat /proc/meminfo
  
  when Linux is launched. Actually, I installed aside
 each
  socket 2GB + 2GB + 1G + 1G Kingston DDR1 ECC, so I
 expected
  a total 24GB. All these memories were OK on a Tyan
 S2895,
  and insertion on the Supermicro H8QCE board seems
 correct.
  I did myself all the management of the 2GB, and I was
  carefully grounded.  Should the filling of the slots
 be
  different?
  
  Thanks
  
  gfrancesco
  
  
  --- On Sat, 4/12/08, Giacomo Mulas
  [EMAIL PROTECTED] wrote:
  
   From: Giacomo Mulas [EMAIL PROTECTED]
   Subject: Re: Problems installing amd64 with
 Supermicro
  motherboard
   To: Francesco Pietra
  [EMAIL PROTECTED]
   Cc: debian-amd64@lists.debian.org, A J
  Stiles [EMAIL PROTECTED]
   Date: Saturday, April 12, 2008, 12:20 AM
   On Fri, 11 Apr 2008, Francesco Pietra wrote:
   
No success in entering BIOS. It seems that
 the
   Intel(R) Boot Agent
should be eliminated, to get free of their
 PXE
  system.
   Does anyone know
how to throw this agent away with Linux? The
 old
  amd64
   installation is
recognized on the new system. Though the
 original
   installation was for a
dual socket machine, all new 875 CPUs are
  recognized
   by
   
$ cat /proc/cpuinfo
   
so that I can expect to be able to clean
 things
  with
   the previous Debian
amd64 installation, edit BIOS, and then
  reinstalling
   amd64 in order that
all new hardware is properly taken into
 account.
   
What Intel suggests to eliminate their Boot
 Agent
  is
   to download a DOS
program (subjected to property restrictions;
  curiously
   so because I want
to get free of their intruding program,
 which let
  me
   think that
individuals are not properly defended by the
 laws
   against intruders). DOS
is something I am not familiar with and I
  don't
   want to get involved in.
If not else I can't imagine how to get
 DOS on
  my
   amd64 installation. I am
already irritated enough that to submit a
 letter
  to
   the principal journal
of chemistry, JACS, one should have to deal
 with
  their
   Visual Basic
macros, which require getting involved with
  Microsoft.
   I am also irritated
by the Supermicro motherboard having a large

Fw: Re: Problems installing amd64 with Supermicro motherboard

2008-04-13 Thread Francesco Pietra

The aperture memory hole issue was solved by changing the default AGP 
present for IOMMU Mode to 64 MB (the option was from 32 MB to 1GB). AGP is 
not present in this board.

However the issue about memory

Memory: 20079812k/22544384k available remains. Actually, there are 2 + 2 + 1 GB 
at each node, so it should be 2400k.

I can't imagine if a fresh install of Debian can change the memory detection.

francesco

--- On Sun, 4/13/08, Francesco Pietra [EMAIL PROTECTED] wrote:

 From: Francesco Pietra [EMAIL PROTECTED]
 Subject: Fw: Re: Problems installing amd64 with Supermicro motherboard
 To: amd64 Debian debian-amd64@lists.debian.org
 Cc: Giacomo Mulas [EMAIL PROTECTED]
 Date: Sunday, April 13, 2008, 7:07 AM
 The CD-ROM issue was solved. Now CD-ROM detected.
 
 Concerning the aperture memory hole reported
 below, I forgot to mention:
 
 $ dmesg | grep -i memory
 your BIOS doesn't leave a aperture memory hole.
 
 
 As to network, dmesg reports
 
 e1000: eth1: e1000_probe: Intel(R) PRO/1000 Network
 Connection.
 
 
 As the raid1 is in order, like my applications (Amber Dock
 NEChem), is it worth while to try recognizing the Gigabit
 or is it better to reinstall the system? With my previous
 2-socket system I had no problems in installing etch with
 raid1.
 
 Ciao
 francesco
 
 
 
 --- On Sat, 4/12/08, Francesco Pietra
 [EMAIL PROTECTED] wrote:
 
  From: Francesco Pietra [EMAIL PROTECTED]
  Subject: Fw: Re: Problems installing amd64 with
 Supermicro motherboard
  To: debian64
 debian-amd64@lists.debian.org
  Cc: Giacomo Mulas
 [EMAIL PROTECTED]
  Date: Saturday, April 12, 2008, 3:04 PM
  Additional info related or not to
 continuous vs
  discrete and memory problems reported
 below,
  from running Debian and commanding
  
  # dmesg
  
  
  Checking aperture...
  CPU 0: aperture too small (32 MB)
  No AGP bridge found
  Your BIOS doesn't leave a aperture memory hole
  Please enable the IOMMU option in the BIOS setup
  This costs you 64 MB of RAM
 Mapping aperture over 65536 KB of RAM @ 800
  
  
  Memory: 20545780k/22020096k available (1929 kernel
 code,
  425288k reserved, 864k data, 176 init).
  
  As to peripherals, floppy is detected by both BIOS and
  dmesg, while cdrom is not detected by
  
  $ dmesg
  $ cat /proc/sys/dev/cdrom/info
  $ cat /proc/ide/drivers
  $ cat /proc/scsi/scsi
  
  The DVD Pioneer DVR-110 (which was OK on my previous
 Tyan
  S2895) was  IDE connected through the 80-wire ATA 133
 cable
  furnished with the Supermicro motherboard. Is any
 jumper
  setting needed?
  
  
  Thanks
  francesco
  
  --- On Sat, 4/12/08, Francesco Pietra
  [EMAIL PROTECTED] wrote:
  
   From: Francesco Pietra
 [EMAIL PROTECTED]
   Subject: Re: Problems installing amd64 with
 Supermicro
  motherboard
   To: Giacomo Mulas
  [EMAIL PROTECTED]
   Cc: debian-amd64@lists.debian.org, A J
  Stiles [EMAIL PROTECTED]
   Date: Saturday, April 12, 2008, 10:17 AM
   Hi
   I finally succeeded in entering BIOS (although
 the
  Intel
   Boot Agent is a pest that has still to be
 eliminated;
   thanks to ael for suggesting Freedos:
 not
  yet
   tried, I first wanted to configure BIOS at least
 where
  I am
   sure what I  am doing).
   
   In configuring the CPU (4 dual-core amd 875 Rev
 E1:
  cache
   L1 256KB, cache L2 2048KB) it is not clear to me
 how
  to set
   the MTRR mapping. The choice is between
   continuous (which makes the PCI hole
   noncacheable) and discrete (which
 places
  the
   PCI hole beloww the 4GB boundary).
   
   Oddly, the System Memory is reported 20480MB
 (which
  agrees
   with the result of command
   
   $ cat /proc/meminfo
   
   when Linux is launched. Actually, I installed
 aside
  each
   socket 2GB + 2GB + 1G + 1G Kingston DDR1 ECC, so
 I
  expected
   a total 24GB. All these memories were OK on a
 Tyan
  S2895,
   and insertion on the Supermicro H8QCE board seems
  correct.
   I did myself all the management of the 2GB, and I
 was
   carefully grounded.  Should the filling of the
 slots
  be
   different?
   
   Thanks
   
   gfrancesco
   
   
   --- On Sat, 4/12/08, Giacomo Mulas
   [EMAIL PROTECTED] wrote:
   
From: Giacomo Mulas
 [EMAIL PROTECTED]
Subject: Re: Problems installing amd64 with
  Supermicro
   motherboard
To: Francesco Pietra
   [EMAIL PROTECTED]
Cc: debian-amd64@lists.debian.org, A J
   Stiles [EMAIL PROTECTED]
Date: Saturday, April 12, 2008, 12:20 AM
On Fri, 11 Apr 2008, Francesco Pietra wrote:

 No success in entering BIOS. It seems
 that
  the
Intel(R) Boot Agent
 should be eliminated, to get free of
 their
  PXE
   system.
Does anyone know
 how to throw this agent away with
 Linux? The
  old
   amd64
installation is
 recognized on the new system. Though
 the
  original
installation was for a
 dual socket machine, all new 875 CPUs
 are
   recognized
by

 $ cat /proc/cpuinfo

 so that I can expect to be able to
 clean
  things
   with
the previous Debian
 amd64

Re: Problems installing amd64 with Supermicro motherboard

2008-04-12 Thread Francesco Pietra
Hi
No success in entering BIOS. It seems that the Intel(R) Boot Agent should be 
eliminated, to get free of their PXE system. Does anyone know how to throw this 
agent away with Linux? The old amd64 installation is recognized on the new 
system. Though the original installation was for a dual socket machine, all new 
875 CPUs are recognized by

$ cat /proc/cpuinfo

so that I can expect to be able to clean things with the previous Debian amd64 
installation, edit BIOS, and then reinstalling amd64 in order that all new 
hardware is properly taken into account.

What Intel suggests to eliminate their Boot Agent is to download a DOS program 
(subjected to property restrictions; curiously so because I want to get free of 
their intruding program, which let me think that individuals are not properly 
defended by the laws against intruders). DOS is something I am not familiar 
with and I don't want to get involved in. If not else I can't imagine how to 
get DOS on my amd64 installation. I am already irritated enough that to submit 
a letter to the principal journal of chemistry, JACS, one should have to deal 
with their Visual Basic macros, which require getting involved with Microsoft. 
I am also irritated by the Supermicro motherboard having a large portion 
dedicated to Microsoft to let them do raids, while I can better solve the 
problem with a software raid.

I have now submitted the problem to Supermicro Europe but I expect the same 
answer I had a couple of years ago from Tyan Europe: We do not answer 
questions related to Debian Linux, although even then the problem was bnot 
such related.

Thanks for help

francesco


--- On Fri, 4/11/08, A J Stiles [EMAIL PROTECTED] wrote:

 From: A J Stiles [EMAIL PROTECTED]
 Subject: Re: Problems installing amd64 with Supermicro motherboard
 To: debian-amd64@lists.debian.org
 Date: Friday, April 11, 2008, 10:00 AM
 On Friday 11 Apr 2008, Francesco Pietra wrote:
  The new system launches Debian Linux amd64 etch
 present on the disks.
  Before installing Debian amd64 anew, I wanted to
 configure BIOS. Unable to
  enter BIOS. What is entered is Intel(R) Boot Agent.
 
 Last time I worked on a Supermicro mobo, it was the usual
 DEL for BIOS setup.
 
 On some of the oddball machines I've seen, placing a
 large, heavy book on the 
 keayboard (so all the typing keys are held down!) sort-of
 works, either by 
 stopping the POST with a keyboard error or because the
 right key was held 
 down  (along with several wrong ones!)
 
 -- 
 AJS
 delta echo bravo six four at earthshod dot co dot uk
 
 
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 To UNSUBSCRIBE, email to
 [EMAIL PROTECTED]
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 [EMAIL PROTECTED]

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Re: Problems installing amd64 with Supermicro motherboard

2008-04-12 Thread Giacomo Mulas

On Fri, 11 Apr 2008, Francesco Pietra wrote:


No success in entering BIOS. It seems that the Intel(R) Boot Agent
should be eliminated, to get free of their PXE system. Does anyone know
how to throw this agent away with Linux? The old amd64 installation is
recognized on the new system. Though the original installation was for a
dual socket machine, all new 875 CPUs are recognized by

$ cat /proc/cpuinfo

so that I can expect to be able to clean things with the previous Debian
amd64 installation, edit BIOS, and then reinstalling amd64 in order that
all new hardware is properly taken into account.

What Intel suggests to eliminate their Boot Agent is to download a DOS
program (subjected to property restrictions; curiously so because I want
to get free of their intruding program, which let me think that
individuals are not properly defended by the laws against intruders). DOS
is something I am not familiar with and I don't want to get involved in.
If not else I can't imagine how to get DOS on my amd64 installation. I am
already irritated enough that to submit a letter to the principal journal
of chemistry, JACS, one should have to deal with their Visual Basic
macros, which require getting involved with Microsoft. I am also irritated
by the Supermicro motherboard having a large portion dedicated to
Microsoft to let them do raids, while I can better solve the problem with
a software raid.

I have now submitted the problem to Supermicro Europe but I expect the
same answer I had a couple of years ago from Tyan Europe: We do not
answer questions related to Debian Linux, although even then the problem
was not such related.


Ciao Francesco.

A possible way around your problem, even if it will not remove the intel
blob, could be the following. Since you can boot in a debian system, you can
use it to do a fresh install as well. Use the debootstrap utility
(contained in the debootstrap package) to do a fresh install. You just
need a working debian system, with a working internet connection, and the
target file systems mounted. The only problem is if you want to reinstall on
top of your existing (and working) system. In that case, you may do it in
two steps: first install just a base system + debootstrap in a small
partition (e.g. the old swap partition would do); then reboot in that small
partition and use it to clean up the old system and then start a fresh
install using debootstrap again. It sounds long, but if you have a fast
internet connection it will actually require a handful of minutes.

Ciao
Giacomo

--
_

Giacomo Mulas [EMAIL PROTECTED]
_

OSSERVATORIO ASTRONOMICO DI CAGLIARI
Str. 54, Loc. Poggio dei Pini * 09012 Capoterra (CA)

Tel. (OAC): +39 070 71180 248 Fax : +39 070 71180 222
Tel. (UNICA): +39 070 675 4916
_

When the storms are raging around you, stay right where you are
 (Freddy Mercury)
_


--
To UNSUBSCRIBE, email to [EMAIL PROTECTED]
with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]



Re: Problems installing amd64 with Supermicro motherboard

2008-04-12 Thread Francesco Pietra
Hi
I finally succeeded in entering BIOS (although the Intel Boot Agent is a pest 
that has still to be eliminated; thanks to ael for suggesting Freedos: not 
yet tried, I first wanted to configure BIOS at least where I am sure what I  am 
doing).

In configuring the CPU (4 dual-core amd 875 Rev E1: cache L1 256KB, cache L2 
2048KB) it is not clear to me how to set the MTRR mapping. The choice is 
between continuous (which makes the PCI hole noncacheable) and discrete 
(which places the PCI hole beloww the 4GB boundary).

Oddly, the System Memory is reported 20480MB (which agrees with the result of 
command

$ cat /proc/meminfo

when Linux is launched. Actually, I installed aside each socket 2GB + 2GB + 1G 
+ 1G Kingston DDR1 ECC, so I expected a total 24GB. All these memories were OK 
on a Tyan S2895, and insertion on the Supermicro H8QCE board seems correct. I 
did myself all the management of the 2GB, and I was carefully grounded.  Should 
the filling of the slots be different?

Thanks

gfrancesco


--- On Sat, 4/12/08, Giacomo Mulas [EMAIL PROTECTED] wrote:

 From: Giacomo Mulas [EMAIL PROTECTED]
 Subject: Re: Problems installing amd64 with Supermicro motherboard
 To: Francesco Pietra [EMAIL PROTECTED]
 Cc: debian-amd64@lists.debian.org, A J Stiles [EMAIL PROTECTED]
 Date: Saturday, April 12, 2008, 12:20 AM
 On Fri, 11 Apr 2008, Francesco Pietra wrote:
 
  No success in entering BIOS. It seems that the
 Intel(R) Boot Agent
  should be eliminated, to get free of their PXE system.
 Does anyone know
  how to throw this agent away with Linux? The old amd64
 installation is
  recognized on the new system. Though the original
 installation was for a
  dual socket machine, all new 875 CPUs are recognized
 by
 
  $ cat /proc/cpuinfo
 
  so that I can expect to be able to clean things with
 the previous Debian
  amd64 installation, edit BIOS, and then reinstalling
 amd64 in order that
  all new hardware is properly taken into account.
 
  What Intel suggests to eliminate their Boot Agent is
 to download a DOS
  program (subjected to property restrictions; curiously
 so because I want
  to get free of their intruding program, which let me
 think that
  individuals are not properly defended by the laws
 against intruders). DOS
  is something I am not familiar with and I don't
 want to get involved in.
  If not else I can't imagine how to get DOS on my
 amd64 installation. I am
  already irritated enough that to submit a letter to
 the principal journal
  of chemistry, JACS, one should have to deal with their
 Visual Basic
  macros, which require getting involved with Microsoft.
 I am also irritated
  by the Supermicro motherboard having a large portion
 dedicated to
  Microsoft to let them do raids, while I can better
 solve the problem with
  a software raid.
 
  I have now submitted the problem to Supermicro Europe
 but I expect the
  same answer I had a couple of years ago from Tyan
 Europe: We do not
  answer questions related to Debian Linux,
 although even then the problem
  was not such related.
 
 Ciao Francesco.
 
 A possible way around your problem, even if it will not
 remove the intel
 blob, could be the following. Since you can boot in a
 debian system, you can
 use it to do a fresh install as well. Use the
 debootstrap utility
 (contained in the debootstrap package) to do a
 fresh install. You just
 need a working debian system, with a working internet
 connection, and the
 target file systems mounted. The only problem is if you
 want to reinstall on
 top of your existing (and working) system. In that case,
 you may do it in
 two steps: first install just a base system + debootstrap
 in a small
 partition (e.g. the old swap partition would do); then
 reboot in that small
 partition and use it to clean up the old system and then
 start a fresh
 install using debootstrap again. It sounds long, but if you
 have a fast
 internet connection it will actually require a handful of
 minutes.
 
 Ciao
 Giacomo
 
 -- 
 _
 
 Giacomo Mulas [EMAIL PROTECTED]
 _
 
 OSSERVATORIO ASTRONOMICO DI CAGLIARI
 Str. 54, Loc. Poggio dei Pini * 09012 Capoterra (CA)
 
 Tel. (OAC): +39 070 71180 248 Fax : +39 070 71180 222
 Tel. (UNICA): +39 070 675 4916
 _
 
 When the storms are raging around you, stay right
 where you are
   (Freddy Mercury)
 _

__
Do You Yahoo!?
Tired of spam?  Yahoo! Mail has the best spam protection around 
http://mail.yahoo.com 


-- 
To UNSUBSCRIBE, email to [EMAIL PROTECTED]
with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]



Fw: Re: Problems installing amd64 with Supermicro motherboard

2008-04-12 Thread Francesco Pietra
Additional info related or not to continuous vs discrete and memory 
problems reported below, from running Debian and commanding

# dmesg


Checking aperture...
CPU 0: aperture too small (32 MB)
No AGP bridge found
Your BIOS doesn't leave a aperture memory hole
Please enable the IOMMU option in the BIOS setup
This costs you 64 MB of RAM.


Memory: 20545780k/22020096k available (1929 kernel code, 425288k reserved, 864k 
data, 176 init).

As to peripherals, floppy is detected by both BIOS and dmesg, while cdrom is 
not detected by

$ dmesg
$ cat /proc/sys/dev/cdrom/info
$ cat /proc/ide/drivers
$ cat /proc/scsi/scsi

The DVD Pioneer DVR-110 (which was OK on my previous Tyan S2895) was  IDE 
connected through the 80-wire ATA 133 cable furnished with the Supermicro 
motherboard. Is any jumper setting needed?


Thanks
francesco

--- On Sat, 4/12/08, Francesco Pietra [EMAIL PROTECTED] wrote:

 From: Francesco Pietra [EMAIL PROTECTED]
 Subject: Re: Problems installing amd64 with Supermicro motherboard
 To: Giacomo Mulas [EMAIL PROTECTED]
 Cc: debian-amd64@lists.debian.org, A J Stiles [EMAIL PROTECTED]
 Date: Saturday, April 12, 2008, 10:17 AM
 Hi
 I finally succeeded in entering BIOS (although the Intel
 Boot Agent is a pest that has still to be eliminated;
 thanks to ael for suggesting Freedos: not yet
 tried, I first wanted to configure BIOS at least where I am
 sure what I  am doing).
 
 In configuring the CPU (4 dual-core amd 875 Rev E1: cache
 L1 256KB, cache L2 2048KB) it is not clear to me how to set
 the MTRR mapping. The choice is between
 continuous (which makes the PCI hole
 noncacheable) and discrete (which places the
 PCI hole beloww the 4GB boundary).
 
 Oddly, the System Memory is reported 20480MB (which agrees
 with the result of command
 
 $ cat /proc/meminfo
 
 when Linux is launched. Actually, I installed aside each
 socket 2GB + 2GB + 1G + 1G Kingston DDR1 ECC, so I expected
 a total 24GB. All these memories were OK on a Tyan S2895,
 and insertion on the Supermicro H8QCE board seems correct.
 I did myself all the management of the 2GB, and I was
 carefully grounded.  Should the filling of the slots be
 different?
 
 Thanks
 
 gfrancesco
 
 
 --- On Sat, 4/12/08, Giacomo Mulas
 [EMAIL PROTECTED] wrote:
 
  From: Giacomo Mulas [EMAIL PROTECTED]
  Subject: Re: Problems installing amd64 with Supermicro
 motherboard
  To: Francesco Pietra
 [EMAIL PROTECTED]
  Cc: debian-amd64@lists.debian.org, A J
 Stiles [EMAIL PROTECTED]
  Date: Saturday, April 12, 2008, 12:20 AM
  On Fri, 11 Apr 2008, Francesco Pietra wrote:
  
   No success in entering BIOS. It seems that the
  Intel(R) Boot Agent
   should be eliminated, to get free of their PXE
 system.
  Does anyone know
   how to throw this agent away with Linux? The old
 amd64
  installation is
   recognized on the new system. Though the original
  installation was for a
   dual socket machine, all new 875 CPUs are
 recognized
  by
  
   $ cat /proc/cpuinfo
  
   so that I can expect to be able to clean things
 with
  the previous Debian
   amd64 installation, edit BIOS, and then
 reinstalling
  amd64 in order that
   all new hardware is properly taken into account.
  
   What Intel suggests to eliminate their Boot Agent
 is
  to download a DOS
   program (subjected to property restrictions;
 curiously
  so because I want
   to get free of their intruding program, which let
 me
  think that
   individuals are not properly defended by the laws
  against intruders). DOS
   is something I am not familiar with and I
 don't
  want to get involved in.
   If not else I can't imagine how to get DOS on
 my
  amd64 installation. I am
   already irritated enough that to submit a letter
 to
  the principal journal
   of chemistry, JACS, one should have to deal with
 their
  Visual Basic
   macros, which require getting involved with
 Microsoft.
  I am also irritated
   by the Supermicro motherboard having a large
 portion
  dedicated to
   Microsoft to let them do raids, while I can
 better
  solve the problem with
   a software raid.
  
   I have now submitted the problem to Supermicro
 Europe
  but I expect the
   same answer I had a couple of years ago from Tyan
  Europe: We do not
   answer questions related to Debian Linux,
  although even then the problem
   was not such related.
  
  Ciao Francesco.
  
  A possible way around your problem, even if it will
 not
  remove the intel
  blob, could be the following. Since you can boot in a
  debian system, you can
  use it to do a fresh install as well. Use the
  debootstrap utility
  (contained in the debootstrap package) to
 do a
  fresh install. You just
  need a working debian system, with a working internet
  connection, and the
  target file systems mounted. The only problem is if
 you
  want to reinstall on
  top of your existing (and working) system. In that
 case,
  you may do it in
  two steps: first install just a base system +
 debootstrap
  in a small
  partition (e.g. the old swap partition would do

Re: Problems installing amd64 with Supermicro motherboard

2008-04-12 Thread Francesco Pietra
Hi Giacomo:
I do have a fast internet connections, though the current installation of amd64 
was for a RealTek. On the Supermicro there is an integrated Gigabit, which is 
not seen by Linux. This also means that I can't scp to the machine and from it, 
which spoils the possibility offered by running computational programs. Also 
the CDROM is not seen (by both Linux and BIOS): might it be that the 80-wire 
ATA 133 cable used is not compatible with the Pioneer DVD-110?

It seems that the needed steps are:

1) Fix the hardware problem of the CDROM
2) Prevent Intel Boot Agent from initializing (which also takes time)
3) Deactivate from BIOS all that is not needed, such as parallel port, 
COM1/COM2 not to subtract resources.
4) Reinstall amd64, possibly lenny instead of etch (finally, this is not a 
server, it is a workstation)

francesco


--- On Sat, 4/12/08, Giacomo Mulas [EMAIL PROTECTED] wrote:

 From: Giacomo Mulas [EMAIL PROTECTED]
 Subject: Re: Problems installing amd64 with Supermicro motherboard
 To: Francesco Pietra [EMAIL PROTECTED]
 Cc: debian-amd64@lists.debian.org, A J Stiles [EMAIL PROTECTED]
 Date: Saturday, April 12, 2008, 12:20 AM
 On Fri, 11 Apr 2008, Francesco Pietra wrote:
 
  No success in entering BIOS. It seems that the
 Intel(R) Boot Agent
  should be eliminated, to get free of their PXE system.
 Does anyone know
  how to throw this agent away with Linux? The old amd64
 installation is
  recognized on the new system. Though the original
 installation was for a
  dual socket machine, all new 875 CPUs are recognized
 by
 
  $ cat /proc/cpuinfo
 
  so that I can expect to be able to clean things with
 the previous Debian
  amd64 installation, edit BIOS, and then reinstalling
 amd64 in order that
  all new hardware is properly taken into account.
 
  What Intel suggests to eliminate their Boot Agent is
 to download a DOS
  program (subjected to property restrictions; curiously
 so because I want
  to get free of their intruding program, which let me
 think that
  individuals are not properly defended by the laws
 against intruders). DOS
  is something I am not familiar with and I don't
 want to get involved in.
  If not else I can't imagine how to get DOS on my
 amd64 installation. I am
  already irritated enough that to submit a letter to
 the principal journal
  of chemistry, JACS, one should have to deal with their
 Visual Basic
  macros, which require getting involved with Microsoft.
 I am also irritated
  by the Supermicro motherboard having a large portion
 dedicated to
  Microsoft to let them do raids, while I can better
 solve the problem with
  a software raid.
 
  I have now submitted the problem to Supermicro Europe
 but I expect the
  same answer I had a couple of years ago from Tyan
 Europe: We do not
  answer questions related to Debian Linux,
 although even then the problem
  was not such related.
 
 Ciao Francesco.
 
 A possible way around your problem, even if it will not
 remove the intel
 blob, could be the following. Since you can boot in a
 debian system, you can
 use it to do a fresh install as well. Use the
 debootstrap utility
 (contained in the debootstrap package) to do a
 fresh install. You just
 need a working debian system, with a working internet
 connection, and the
 target file systems mounted. The only problem is if you
 want to reinstall on
 top of your existing (and working) system. In that case,
 you may do it in
 two steps: first install just a base system + debootstrap
 in a small
 partition (e.g. the old swap partition would do); then
 reboot in that small
 partition and use it to clean up the old system and then
 start a fresh
 install using debootstrap again. It sounds long, but if you
 have a fast
 internet connection it will actually require a handful of
 minutes.
 
 Ciao
 Giacomo
 
 -- 
 _
 
 Giacomo Mulas [EMAIL PROTECTED]
 _
 
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 _
 
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Problems installing amd64 with Supermicro motherboard

2008-04-11 Thread Francesco Pietra
I have assembled a system with a H8QCE quad socket motherboard (amd dual 
opteron 875), attaching the two SATA HDs from my previous system dual socket on 
a Tyan S2895 motherboard (dual opteron 265). No additional card was added, 
i.e., I am using integrated VGA and JLAN (Gigabit Ethernet RJ45).

The new system launches Debian Linux amd64 etch present on the disks. Before 
installing Debian amd64 anew, I wanted to configure BIOS. Unable to enter BIOS. 
What is entered is Intel(R) Boot Agent.

From a search on internet, it seems that Inter Boot Agent is required by 
motherboards that incorporate a network system (the present one incorporates a 
Gibabit, see above). I have also seen that Intel Boot Agent can be suppressed 
using some extra Intel software.

Initially my new system was not at the router, than it was attached to the 
router. Can't say if the Intel Boot agent only appeared when the system was at 
the router.

Well, the hope is that some Debian user have familiarity with such affairs, or 
that I was grossly unable to find the way to enter BIOS (wath happens at boot 
goes on so rapidly that there is no time to read. The manual says to enter BIOS 
with ESC: either ESC or Ctrl + S bring to the Intel Boot Agent.

Thanks
francesco pietra

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Re: Problems installing amd64 with Supermicro motherboard

2008-04-11 Thread A J Stiles
On Friday 11 Apr 2008, Francesco Pietra wrote:
 The new system launches Debian Linux amd64 etch present on the disks.
 Before installing Debian amd64 anew, I wanted to configure BIOS. Unable to
 enter BIOS. What is entered is Intel(R) Boot Agent.

Last time I worked on a Supermicro mobo, it was the usual DEL for BIOS setup.

On some of the oddball machines I've seen, placing a large, heavy book on the 
keayboard (so all the typing keys are held down!) sort-of works, either by 
stopping the POST with a keyboard error or because the right key was held 
down  (along with several wrong ones!)

-- 
AJS
delta echo bravo six four at earthshod dot co dot uk


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