Greetings Sebastien, thank you sooo much for your fix. I was in low internet connectivity mode these last weeks.
I'll start packaging the new version of the software project and check that the fix will be integrated upstream. Cheers, Filippo On Thu, Aug 15, 2013 at 09:50:30PM +0200, Sébastien Villemot wrote: > Control: tags -1 + pending > > Le vendredi 28 juin 2013 à 15:27 +0200, Sébastien Villemot a écrit : > > Package: src:openms > > Version: 1.9.0-4 > > > openms fails to build from source against glpk 4.51-1, which is currently > > available in experimental. A build log is attached to this report. > > I have uploaded to DELAYED/5 a NMU fixing this issue. The debdiff is > attached. Please let me know if I should delay the upload longer. > > Cheers, > > diff -Nru openms-1.9.0/debian/changelog openms-1.9.0/debian/changelog > --- openms-1.9.0/debian/changelog 2013-03-29 13:09:59.000000000 +0100 > +++ openms-1.9.0/debian/changelog 2013-08-15 17:54:35.000000000 +0200 > @@ -1,3 +1,11 @@ > +openms (1.9.0-4.1) unstable; urgency=low > + > + * Non-maintainer upload. > + * glpk-4.49.patch: new patch, fixes FTBFS against recent versions of > + GLPK. (Closes: #714365) > + > + -- Sébastien Villemot <sebast...@debian.org> Thu, 15 Aug 2013 17:54:30 > +0200 > + > openms (1.9.0-4) unstable; urgency=low > > * debian/rules: reinstate the .NOTPARALLEL: directive to preclude > diff -Nru openms-1.9.0/debian/patches/glpk-4.49.patch > openms-1.9.0/debian/patches/glpk-4.49.patch > --- openms-1.9.0/debian/patches/glpk-4.49.patch 1970-01-01 > 01:00:00.000000000 +0100 > +++ openms-1.9.0/debian/patches/glpk-4.49.patch 2013-08-15 > 17:51:57.000000000 +0200 > @@ -0,0 +1,19 @@ > +Description: Fix FTBFS against recent versions of GLPK > +Author: Sébastien Villemot <sebast...@debian.org> > +Bug-Debian: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=714365 > +Forwarded: no > +Last-Update: 2013-08-15 > +--- > +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ > +--- a/include/OpenMS/DATASTRUCTURES/LPWrapper.h > ++++ b/include/OpenMS/DATASTRUCTURES/LPWrapper.h > +@@ -36,7 +36,8 @@ > + // only declare them here > + class CoinModel; > + #define GLP_PROB_DEFINED > +-typedef struct { double _opaque_prob[100]; } glp_prob; > ++struct glp_prob; > ++typedef struct glp_prob glp_prob; > + > + namespace OpenMS > + { > diff -Nru openms-1.9.0/debian/patches/series > openms-1.9.0/debian/patches/series > --- openms-1.9.0/debian/patches/series 2013-03-29 13:09:59.000000000 > +0100 > +++ openms-1.9.0/debian/patches/series 2013-08-15 17:43:54.000000000 > +0200 > @@ -3,3 +3,4 @@ > topp-documenter-patch-from-stephan-aiche.patch > allow-recent-versions-find-libbost-and-force-shared-lib-use.patch > force-use-shared-object-libs-upon-linking.patch > +glpk-4.49.patch > _______________________________________________ > Debichem-devel mailing list > debichem-de...@lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debichem-devel -- -- Filippo Rusconi, PhD - public crypto key C78F687C @ pgp.mit.edu Researcher at CNRS and Debian Developer <lopi...@debian.org> Author of ``massXpert'' at http://www.massxpert.org -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
