Bug#1017249: rheolef: FTBFS: ../../include/rheolef/communicator.h:112:25: error: expected initializer before ‘size’

2022-09-04 Thread PIERRE SARAMITO
Dear Lucas, 

Many thanks for reporting this bug. 

I've just tried to reproduce it with sid (g++ 12.2.0-1) and bookwork (g++ 
12.1.0-3): 
the package built successfully in both cases. 
I used pbuilder together with all the up-to-date package versions. 

So, please could you try to rebuild the rheolef package in Debian (I am not DM) 
and let me known: probably this bug in rheolef was due to another package 
(g++?) 
and could now be closed ? 

Many thanks for your help, 

Pierre 
-- 
pierre.saram...@imag.fr 
Directeur de Recherche CNRS 
Laboratoire Jean Kuntzmann, Grenoble, France 
http://ljk.imag.fr/membres/Pierre.Saramito 


Bug#984965: HELP needed for uploading a new upstream version of the Rheolef package

2022-06-02 Thread PIERRE SARAMITO
Hi Nilesh Patra, 

> From Nilesh Patra: 
> I'm a bit confused with the branches though, 
> isn't debian/sid the branch we should be using for uploads? 
> Atleast I am seeing prev commits on that branch. 
> Please move your commits there if that's the case. 

I'm sorry about that: the prev commits was on the "master" git branch, 
with improvements from Rafael Laboissière  and me. 
Next, new version 7.2 is on the "master" git branch also. 

I don't known how to move it now on the "debian/sid" one: 
a git merge will perhaps now lead to a lot of conflicts ? 
Is it possible to use the "master" branch instead for uploading ? 
I don't known wich is the best solution. 

Many thanks for your help, 

Pierre 
-- 
pierre.saram...@imag.fr 
Directeur de Recherche CNRS 
Laboratoire Jean Kuntzmann, Grenoble, France 
http://ljk.imag.fr/membres/Pierre.Saramito 


De: "Nilesh Patra"  
À: "PIERRE SARAMITO" , "Andreas Tille" 
, "debian-science" , 
"1007118" <1007...@bugs.debian.org>, "984965" <984...@bugs.debian.org>, "bunk" 
, "byang" , "rafael"  
Envoyé: Jeudi 2 Juin 2022 09:38:28 
Objet: Re: HELP needed for uploading a new upstream version of the Rheolef 
package 

On 2 June 2022 11:57:38 am IST, PIERRE SARAMITO  
wrote: 
>I just commit with git a new release 7.2-1 of the debianization of the rheolef 
>package. 
>This corresponds to a new version 7.2 of the upstream package 
> 
>Could you please upload it in debian ? 

I can do it later today. 

I'm a bit confused with the branches though, isn't debian/sid the branch we 
should be using for uploads? 
Atleast I am seeing prev commits on that branch. 
Please move your commits there if that's the case. 


-- 
Best, 
Nilesh 


Bug#1007118: HELP needed for uploading a new upstream version of the Rheolef package

2022-06-01 Thread PIERRE SARAMITO
Hi all Debian Maintainers, 

I just commit with git a new release 7.2-1 of the debianization of the rheolef 
package. 
This corresponds to a new version 7.2 of the upstream package: 

https://salsa.debian.org/science-team/rheolef 

This version closes the two pending outstanding bugs: #1007118 and #984965 
The upstream version 7.2 integrates some patches 
thanks to Nilesh Patra  
The debianization version 7.2-1 integrates various improvements 
thanks to Raphael Laboissiere  

Could you please upload it in debian ? 

Many thanks for your help. 

Best wishes, 

Pierre 
-- 
pierre.saram...@imag.fr 
Directeur de Recherche CNRS 
Laboratoire Jean Kuntzmann, Grenoble, France 
http://ljk.imag.fr/membres/Pierre.Saramito 


Bug#985224: unblock: rheolef/ 7.1-6

2021-03-15 Thread Pierre Saramito

Dear Boyuan Yang,

Many thanks for your fast reply and your fix to the Debian files of  
the Rheolef package.


Are these changes merged now in the master branch of the GIT  
repository of the debianization of Rheolef ?


  https://salsa.debian.org/science-team/rheolef

Many thanks for your help,

Pierre


Boyuan Yang  a écrit :


Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock
X-Debbugs-Cc: pierre.saram...@imag.fr debian-scie...@lists.debian.org

Please unblock package rheolef

[ Reason ]
The current version of rheolef in Testing has piuparts error
(Buster2Bullseye, missing Breaks+Conflicts) as shown in
https://bugs.debian.org/984529 . The current version in Sid targets on
fixing this RC bug.

[ Impact ]
If the bug is not fixed, the upgrade from Debian 10 to Debian 11 will
fail when both rheolef and librheolef-dev are installed.

[ Tests ]
Piuparts test failed for package in Testing but succeeded for package
in Sid. See: https://piuparts.debian.org/sid/source/r/rheolef.html

[ Risks ]
No risk expected.

[ Checklist ]
  [X] all changes are documented in the d/changelog
  [X] I reviewed all changes and I approve them
  [X] attach debdiff against the package in testing

unblock rheolef/ 7.1-6




--
Soutenez la sécurité sociale !
Signez la pétition pour l'hôpital public :
  https://confinesmobilises.wesign.it



Bug#978088: HELP needed for uploading a new debianisation 7.1-3 of the Rheolef package

2021-01-02 Thread Pierre Saramito
Hi Anton, 

> From Anton Gladky: 
> sure, I will! Please push your changes in master-branch. It looks 
> only the tags were pushed. 

Sorry ! Its done now. 

Many thanks for your help, 

Pierre 
-- 
pierre.saram...@imag.fr 
Directeur de Recherche CNRS 
Laboratoire Jean Kuntzmann, Grenoble, France 
http://ljk.imag.fr/membres/Pierre.Saramito 


Bug#978088: HELP needed for uploading a new debianisation 7.1-3 of the Rheolef package

2021-01-02 Thread Pierre Saramito
Hi Anton, hi all, 

I just commit with git a new release 7.1-3 of the debianisation 
of the rheolef package: it fixes bug #978088 (see d/changelog) 
thanks to a patch by Vagrant Cascadian  

The upstream version is unchanged (7.1). 

Could you please upload it in debian ? 

Many thanks for your help. 

Best regards, 

Pierre 
-- 
pierre.saram...@imag.fr 
Directeur de Recherche CNRS 
Laboratoire Jean Kuntzmann, Grenoble, France 
http://ljk.imag.fr/membres/Pierre.Saramito 


Bug#978088: rheolef: reproducible builds: date in various .pdf files

2021-01-02 Thread Pierre Saramito
Dear Vagrant, 

Many thanks for your patch: it has just been integrated in a new 
release 7.1-3 of the debianization of the Rheolef package. 
It has also been integrated for the next upstream version. 

Best wishes, 

Pierre 
-- 
pierre.saram...@imag.fr 
Directeur de Recherche CNRS 
Laboratoire Jean Kuntzmann, Grenoble, France 
http://ljk.imag.fr/membres/Pierre.Saramito 


Bug#971933: HELP needed for uploading a new debianisation of the Rheolef package

2020-12-05 Thread Pierre Saramito
Hi Andreas, 

I just commit with git a new release 7.1-2 of the debianisation 
of the rheolef package: it fixes a FTBFS bug #971933 (see d/changelog). 

The upstream version is unchanged (7.1). 

Could you please upload it in debian ? 

Many thanks for your help. 

Best regards, 

Pierre 
-- 
pierre.saram...@imag.fr 
Directeur de Recherche CNRS 
Laboratoire Jean Kuntzmann, Grenoble, France 
http://ljk.imag.fr/membres/Pierre.Saramito 


Bug#944197: HELP needed for uploading a new upstream version of the Rheolef package

2020-03-23 Thread Pierre Saramito

Hi Andreas Tille,


From Andreas:
Currently I can only support Covid-19 related
packages (which we try to assemble in Debian Med team currently)


Let me known if I could help the Debian Med team ?
I remain "confined" at home, but I could help (test pkg, ect) ?



please find some other sponsor from Debian Science project.


Is there somebody from the Debian science project
to just help me for uploading the Rheolef-7.1-1 pkg ?
The debianization is ready and well-tested at
  https://salsa.debian.org/science-team/rheolef
It closes the two FTBFS bugs: #944197 and #946116


Best wishes,

Pierre

--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://ljk.imag.fr/membres/Pierre.Saramito



Bug#944197: HELP needed for uploading a new upstream version of the Rheolef package

2020-03-22 Thread Pierre Saramito
Hi Andreas, 

I just commit with git a new release 7.1-1 of the debianisation of the rheolef 
package. 
This corresponds to a new version 7.1 of the upstream package: 

https://salsa.debian.org/science-team/rheolef 

This version closes the two pending FTBFS bugs: #944197 and #946116 

Could you please upload it in debian ? 

Many thanks for your help. 

Best regards, 

Pierre 
-- 
pierre.saram...@imag.fr 
Directeur de Recherche CNRS 
Laboratoire Jean Kuntzmann, Grenoble, France 
http://ljk.imag.fr/membres/Pierre.Saramito 


Bug#954436: openmpi segfault on the stretch(oldstable) distrib

2020-03-21 Thread Pierre Saramito

Package: libopenmpi-dev
Version: 2.0.2-2
Severity: important
File: openmpi

Dear Maintainer,

Openmpi segfaut on stretch(oldstable) distrib.
Here is an exemple that reproduces the problem:

  cat mpi_tst.cc
#include 
int main(int argc, char ** argv) {
  MPI_Init(&argc, &argv);
  MPI_Finalize();
}

  mpic++ mpi_tst.cc

  ./a.out
*** Process received signal ***
Signal: Segmentation fault (11)
Signal code: Address not mapped (1)
Failing at address: (nil)
[ 0] 
/lib/x86_64-linux-gnu/libpthread.so.0(+0x110e0)[0x7f68c4b7c0e0]
[ 1] 
/lib/x86_64-linux-gnu/libc.so.6(strlen+0x26)[0x7f68c484c676]
[ 2] 
/lib/x86_64-linux-gnu/libc.so.6(__strdup+0xe)[0x7f68c484c3ae]
		[ 3]  
/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi/mca_rtc_freq.so(+0x2b95)[0x7f68bc422b95]
		[ 4]  
/usr/lib/x86_64-linux-gnu/libopen-rte.so.20(orte_rtc_base_select+0xeb)[0x7f68c59eef4b]
		[ 5]  
/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi/mca_ess_hnp.so(+0x5391)[0x7f68c37a2391]
		[ 6]  
/usr/lib/x86_64-linux-gnu/libopen-rte.so.20(orte_init+0x235)[0x7f68c599aaa5]
		[ 7]  
/usr/lib/x86_64-linux-gnu/libopen-rte.so.20(orte_daemon+0x488)[0x7f68c59b9608]

[ 8] orted(+0x8ea)[0x55e95c37b8ea]
[ 9] 
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf1)[0x7f68c47ec2e1]
[10] orted(+0x94a)[0x55e95c37b94a]
*** End of error message ***
		[[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a daemon on the  
local node in file ess_singleton_module.c at line 575
		[[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a daemon on the  
local node in file ess_singleton_module.c at line 165


--
It looks like orte_init failed for some reason; your parallel 
process is
likely to abort.  There are many reasons that a parallel 
process can
fail during orte_init; some of which are due to configuration or
environment problems.  This failure appears to be an internal 
failure;
here's some additional information (which may only be relevant 
to an
Open MPI developer):

  orte_ess_init failed
		  --> Returned value Unable to start a daemon on the local node  
(-127) instead of ORTE_SUCCESS


--

--
It looks like MPI_INIT failed for some reason; your parallel 
process is
likely to abort.  There are many reasons that a parallel 
process can
fail during MPI_INIT; some of which are due to configuration or 
environment
problems.  This failure appears to be an internal failure; 
here's some
additional information (which may only be relevant to an Open 
MPI
developer):

  ompi_mpi_init: ompi_rte_init failed
		  --> Returned "Unable to start a daemon on the local node" (-127)  
instead of "Success" (0)


--
*** An error occurred in MPI_Init
*** on a NULL communicator
*** MPI_ERRORS_ARE_FATAL (processes in this communicator will 
now abort,
***and potentially your MPI job)
		Local abort before MPI_INIT completed completed successfully, but am  
not able to aggregate error messages, and not able to guarantee that  
all other processes were killed!


-- System Information:
Debian Release: 9.12
  APT prefers oldstable
  APT policy: (500, 'oldstable')
Architecture: amd64 (x86_64)

Kernel: Linux 5.4.0-4-amd64 (SMP w/4 CPU cores)
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968) (ignored: LC_ALL  
set to C), LANGUAGE=C (charmap=ANSI_X3.4-1968) (ignored: LC_ALL set to  
C)

Shell: /bin/sh linked to /bin/dash
Init: unable to detect

Versions of packages libopenmpi-dev depends on:
ii  libc6   2.24-11+deb9u4
ii  libhwloc-dev1.11.5-1
ii  libhwloc5   1.11.5-1
ii  libibverbs-dev  1.2.1-2
ii  libopenmpi2 2.0.2-2
ii  openmpi-common  2.0.2-2

libopenmpi-dev recommends no packages.

Versions of packages libopenmpi-dev suggests:
pn  openmpi-doc  

-- no debconf information

--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://ljk.imag.fr/membres/Pierre.Saramito



Bug#954329: paraview: opacity incorrectly handled by the debian bullseye(testing) package paraview-5.7

2020-03-20 Thread Pierre Saramito
Package: paraview 
Version: 5.7.0-4+b2 
Severity: normal 

Dear Maintainer, 

The opacity is not handled correctly by paraview-5.7 binary, 
as packaged on bullseye(testing) distrib. 
Here is a unix command that reproduces the bug: 

paraview --script=paraview-opacity-bug.py 

where the paraview-opacity-bug.py python script coulbe be downloaded at 

https://www-ljk.imag.fr/membres/Pierre.Saramito/tmp/paraview-opacity-bug.py 

This problem is specific to the debian package: the upstream paraview-5.7 
version is problem-free when I use the raw binary distributed by kitware: 

https://www.paraview.org/download/ 
https://www.paraview.org/paraview-downloads/download.php?submit=Download&version=v5.7&type=binary&os=Linux&downloadFile=ParaView-5.7.0-osmesa-MPI-Linux-Python3.7-64bit.tar.gz
 

This opacity problem could perhaps be due to the mesa/opengl library, 
as packaged by debian bullseye(testing) ? 

Best whishes, 

Pierre 

-- System Information: 
Debian Release: bullseye/sid 
APT prefers stable 
APT policy: (500, 'stable') 
Architecture: amd64 (x86_64) 

Kernel: Linux 5.4.0-4-amd64 (SMP w/4 CPU cores) 
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8) 
Shell: /bin/sh linked to /usr/bin/dash 
Init: systemd (via /run/systemd/system) 
LSM: AppArmor: enabled 

Versions of packages paraview depends on: 
ii libavcodec58 7:4.2.2-1+b1 
ii libavformat58 7:4.2.2-1+b1 
ii libavutil56 7:4.2.2-1+b1 
ii libc6 2.30-2 
ii libdouble-conversion3 3.1.5-5 
ii libexpat1 2.2.9-1 
ii libfreetype6 2.10.1-2 
ii libgcc-s1 [libgcc1] 10-20200312-2 
ii libgcc1 1:10-20200312-2 
ii libgdal26 3.0.4+dfsg-1 
ii libgl1 1.3.1-1 
ii libglew2.1 2.1.0-4+b1 
ii libhdf5-103 1.10.4+repack-11 
ii libjpeg62-turbo 1:1.5.2-2+b1 
ii liblz4-1 1.9.2-2 
ii liblzma5 5.2.4-1+b1 
ii libopenmpi3 4.0.2-5 
ii libpdal-base9 2.0.1+ds-1+b1 
ii libpng16-16 1.6.37-2 
ii libpython3.7 3.7.7-1 
ii libqt5core5a 5.12.5+dfsg-9 
ii libqt5gui5 5.12.5+dfsg-9 
ii libqt5help5 5.12.5-2+b2 
ii libqt5network5 5.12.5+dfsg-9 
ii libqt5widgets5 5.12.5+dfsg-9 
ii libqt5x11extras5 5.12.5-1 
ii libstdc++6 10-20200312-2 
ii libswscale5 7:4.2.2-1+b1 
ii libtiff5 4.1.0+git191117-2 
ii libx11-6 2:1.6.9-2 
ii libxml2 2.9.10+dfsg-4 
ii libxt6 1:1.1.5-1+b3 
ii python3-autobahn 17.10.1+dfsg1-6 
ii python3-matplotlib 3.1.2-2 
ii python3-mpi4py 3.0.3-4 
ii python3-six 1.14.0-2 
ii python3-twisted 18.9.0-6 
ii tcl [tclsh] 8.6.9+1+b1 
ii zlib1g 1:1.2.11.dfsg-2 

Versions of packages paraview recommends: 
ii mpi-default-bin 1.13 
ii paraview-doc 5.7.0-4 
pn paraview-python  

Versions of packages paraview suggests: 
pn h5utils  
ii hdf5-tools 1.10.4+repack-11 

-- no debconf information 

-- 
pierre.saram...@imag.fr 
Directeur de Recherche CNRS 
Laboratoire Jean Kuntzmann, Grenoble, France 
http://ljk.imag.fr/membres/Pierre.Saramito 


Bug#954326: libmumps-ptscotch-dev: segfault on buster(stable): mumps recompilation nedded

2020-03-20 Thread Pierre Saramito
Package: libmumps-ptscotch-dev 
Version: 5.1.2-4+b2 
Severity: important 

Dear Maintainers, 

The library SEGFAULT on the buster(stable) package libmumps-ptscotch-dev 
5.1.2-4+b2 for the amd64 architecture. 
I used some well-known medium-sized sparse matrix as tests. 
This problem could be fixed on buster by a simple recompilation of the package: 

apt-get source mumps 
cd mumps-5.1.2 
dpkg-buildpackage -us -uc -sa -j1 
dpkg -i libmumps-5.1.2-4_amd64.deb libmumps-dev-4_amd64.deb 
libmumps-scotch-5.1.2-4_amd64.deb libmumps-scotch-dev-4_amd64.deb 
libmumps-ptscotch-5.1.2-4_amd64.deb libmumps-ptscotch-dev-4_amd64.deb 

On the bullseye (testing) distrib, there is no problem at all. 

So, perhaps a binanry dependency has change for mumps on buster(stable), 
and (I dont known why) the package has not been yet recompiled ? 

Best wishes, 

Pierre 

-- System Information: 
Debian Release: 10.3 
APT prefers stable 
APT policy: (500, 'stable') 
Architecture: amd64 (x86_64) 
Foreign Architectures: i386 

Kernel: Linux 4.19.0-8-amd64 (SMP w/4 CPU cores) 
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8) 
Shell: /bin/sh linked to /bin/dash 
Init: systemd (via /run/systemd/system) 
LSM: AppArmor: enabled 

Versions of packages libmumps-ptscotch-dev depends on: 
ii libmumps-dev 5.1.2-4+b2 
ii libmumps-ptscotch-5.1.2 5.1.2-4+b2 

libmumps-ptscotch-dev recommends no packages. 

libmumps-ptscotch-dev suggests no packages. 

-- no debconf information 

-- 
pierre.saram...@imag.fr 
Directeur de Recherche CNRS 
Laboratoire Jean Kuntzmann, Grenoble, France 
http://ljk.imag.fr/membres/Pierre.Saramito 


Bug#939683: HELP needed for uploading a new debianisation of the Rheolef package

2019-09-08 Thread Pierre Saramito
Hi Andreas, 

I just commit with git a new release 7.0-3 of the debianisation 
of the rheolef package: it fixes the bug #939683 (see d/changelog). 

The upstream version is unchanged (7.0). 

Could you please upload it in debian ? 

Many thanks for your help. 

Best regards, 

Pierre 
-- 
pierre.saram...@imag.fr 
Directeur de Recherche CNRS 
Laboratoire Jean Kuntzmann, Grenoble, France 
http://ljk.imag.fr/membres/Pierre.Saramito 


Bug#939683: rheolef: library has invalid mpi default path: fails to compile some examples

2019-09-07 Thread Pierre Saramito
Package: rheolef 
Version: 7.0-2+b1 
Severity: important 
Tags: patch 

Dear Maintainer, 

The "mpi.h" header has been moved from /usr/include/openmpi/ to another 
location. 
The configuration file of the Rheolef library has not been updated yet: 
thus applications do not compile cleanly. 
Example: 
cp -a /usr/share/doc/rheolef-doc/examples . 
cd example 
make dirichlet 
fatal error: mpi.h: No such file or directory 

This issue concerns the following Debian versions: sid, bullseye, buster. 

I have patched the debianization files of the Rheolef package. 
The patch solves this issue and will transmit it to the maintainers via git 
for uploading in Debian. 
The upstream version will be unchanged (7.0). 

Thanks for considering this bug. 

Pierre 


-- System Information: 
Debian Release: 10.0 
APT prefers testing 
APT policy: (500, 'testing') 
Architecture: amd64 (x86_64) 
Foreign Architectures: i386 

Kernel: Linux 4.19.0-5-amd64 (SMP w/32 CPU cores) 
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8) 
Shell: /bin/sh linked to /bin/dash 
Init: systemd (via /run/systemd/system) 
LSM: AppArmor: enabled 

Versions of packages rheolef depends on: 
ii libamd2 1:5.4.0+dfsg-1 
ii libarmadillo9 1:9.200.7+dfsg-1 
ii libboost-iostreams1.67.0 1.67.0-13 
ii libboost-mpi1.67.0 1.67.0-13 
ii libc6 2.28-10 
ii libcgal13 4.13-1+b2 
ii libgcc1 1:8.3.0-2 
ii libgmp10 2:6.1.2+dfsg-4 
ii libmumps-ptscotch-5.1.2 5.1.2-4+b2 
ii libopenmpi3 3.1.3-11 
ii libptscotch-6.0 6.0.6-2 
ii librheolef-dev 7.0-2+b1 
ii librheolef1 7.0-2+b1 
ii libstdc++6 8.3.0-2 
ii libumfpack5 1:5.4.0+dfsg-1 
ii rheolef-doc 7.0-2 

Versions of packages rheolef recommends: 
ii gmsh 4.1.5+really4.1.3+ds1-1 
ii gnuplot-x11 5.2.6+dfsg1-1 
ii mayavi2 4.5.0-1 
ii paraview 5.4.1+dfsg4-3.1+b2 
ii paraview-python 5.4.1+dfsg4-3.1+b2 
-- 
pierre.saram...@imag.fr 
Directeur de Recherche CNRS 
Laboratoire Jean Kuntzmann, Grenoble, France 
http://ljk.imag.fr/membres/Pierre.Saramito 


Bug#897846: HELP needed for uploading a new debianisation of the Rheolef package

2018-10-29 Thread Pierre Saramito
Hi Andreas, 

I just commit with git a new release 7.0-2 of the debianisation 
of the rheolef package: it fixes a FTBS bug #897846 (see d/changelog). 

The upstream version is unchanged (7.0). 

Could you please upload it in debian ? 

Many thanks for your help. 

Best regards, 

Pierre 
-- 
Laboratoire Jean Kuntzmann, Grenoble, France 
http://ljk.imag.fr/membres/Pierre.Saramito 


Bug#888879: HELP needed for uploading a new debianisation of the Rheolef package

2018-02-18 Thread Pierre Saramito
Hi Andreas,

I just commit with git a new release 6.7-6 of the debianisation
of the rheolef package: it fixes a FTBS bug #79
It also fixes others issues related to the previous 6.7-5 version:
multiarch lib install directory and regeneration of
patched autoconf/automake files (see d/changelog).

The upstream version is unchanged (6.7).

Could you please upload it in debian ?

Many thanks for your help.

Best regards,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://ljk.imag.fr/membres/Pierre.Saramito



Bug#888879: Rheolef moved to Git : problem to download/edit the debian files

2018-02-08 Thread Pierre Saramito
Hi Andreas,

Many thanks for your rewrite and modernization 
of the Debian files for the Rheolef package in rheolef-6.7-5.

For build time tests to run correctly,
I have now to patch these files,
but I have a technical problem:

  After the move from SVN to GIT of the package, I am no more able to download 
& edit the files. 

I need to download, edit and upload the debian files,
but I dont have any account on sources.debian.org 

  Any idea how to solve this in a simple way ?

Many thanks for your help for the Debianization of the package,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://ljk.imag.fr/membres/Pierre.Saramito



Bug#888879: rheolef FTBFS on several architectures: test runs forever

2018-02-06 Thread Pierre Saramito
Hi Adrian and Andreas,

Ok, no poblems, I will check this issue.

True, the "make check" test suite was not run before in the
Debian enviromnent. 


This "make check" test suite was developped for managing the 
upstream version source code: it runs a
very long sequence of non-regression test suite.
It runs via "mpirun" and could have non-portability issues
on some architecture. Some possible patch could be to run the
test suite in sequential mode :
   make MPIRUN="" check

 Could you please decrease the severity of this bug, e.g. 
 to normal, as there is no obstacle to build the package.


I have only access to "amd64" achitectures in my lab:
 
 Please could you explain me how to access to access to
 the others machines/architectures used by the Debian team ?
 How to have a login on these machines ?

Thank you for your help maintaining the Debian package,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://ljk.imag.fr/membres/Pierre.Saramito

- Mail original -
De: "Andreas Tille" 
À: 888...@bugs.debian.org, "PIERRE SARAMITO" 
Envoyé: Mardi 6 Février 2018 11:59:19
Objet: Re: Bug#79: rheolef FTBFS on several architectures: test runs forever

Hi Pierre,

as I mentioned on Debian Science maintainers list[1] this problem does
not come unexpected.  Pierre, could you please confirm whether you keep
on maintaining this package and will check this issue?

>From my uneducated perspective the test failures always existed but the
test were simply not run before.  Thus a first course of action might be
to ask ftpmaster for removal of those architectures where rheolef does
not build and reduce severity of the bug to say "important".

Please note that I do not have any time resources to work on this
package.

Kind regards

  Andreas.

[1] 
https://lists.alioth.debian.org/pipermail/debian-science-maintainers/2018-January/057544.html

On Tue, Jan 30, 2018 at 10:24:18PM +0200, Adrian Bunk wrote:
> Source: rheolef
> Version: 6.7-5
> Severity: serious
> 
> https://buildd.debian.org/status/package.php?p=rheolef&suite=sid
> 
> ...
>   mpirun -np 1 ./form_mass_bdr_tst -app P2 -weight yz -I my_cube_TP-5-v2 
> left >/dev/null 2>/dev/null
>   mpirun -np 2 ./form_mass_bdr_tst -app P2 -weight yz -I my_cube_TP-5-v2 
> left >/dev/null 2>/dev/null
>   mpirun -np 3 ./form_mass_bdr_tst -app P2 -weight yz -I my_cube_TP-5-v2 
> left >/dev/null 2>/dev/null
>   mpirun -np 1 ./form_mass_bdr_tst -app P2 -weight yz -I my_cube_TP-5-v2 
> right >/dev/null 2>/dev/null
>   mpirun -np 2 ./form_mass_bdr_tst -app P2 -weight yz -I my_cube_TP-5-v2 
> right >/dev/null 2>/dev/null
> E: Build killed with signal TERM after 150 minutes of inactivity
> 
> 
> I've reproduced this on i386, two processes are running
> forever (aborted after 6 hours on a fast CPU) with 100% CPU.
> 
> Backtraces:
> 
> Thread 3 (Thread 0xf50ffb40 (LWP 29032)):
> #0  0xf7ed6db9 in __kernel_vsyscall ()
> #1  0xf70fabd3 in __GI___poll (fds=0xf47005d0, nfds=2, timeout=360) at 
> ../sysdeps/unix/sysv/linux/poll.c:29
> #2  0xf5caed4a in poll (__timeout=360, __nfds=2, __fds=0xf47005d0) at 
> /usr/include/i386-linux-gnu/bits/poll2.h:46
> #3  poll_dispatch (base=0x578eb9c0, tv=0xf50f9bfc) at poll.c:165
> #4  0xf5ca59e9 in opal_libevent2022_event_base_loop (base=, 
> flags=) at event.c:1630
> #5  0xf5c6b3bd in progress_engine (obj=0x578eb950) at 
> runtime/opal_progress_threads.c:105
> #6  0xf5df6316 in start_thread (arg=0xf50ffb40) at pthread_create.c:465
> #7  0xf7105296 in clone () at ../sysdeps/unix/sysv/linux/i386/clone.S:108
> 
> Thread 2 (Thread 0xf5ac5b40 (LWP 29031)):
> #0  0xf7ed6db9 in __kernel_vsyscall ()
> #1  0xf71053fa in __GI_epoll_pwait (epfd=7, events=0x578ea930, maxevents=32, 
> timeout=-1, set=0x0)
> at ../sysdeps/unix/sysv/linux/epoll_pwait.c:42
> #2  0xf710569a in epoll_wait (epfd=7, events=0x578ea930, maxevents=32, 
> timeout=-1)
> at ../sysdeps/unix/sysv/linux/epoll_wait.c:30
> #3  0xf5ca199a in epoll_dispatch (base=0x578ea7a0, tv=0x0) at epoll.c:407
> #4  0xf5ca59e9 in opal_libevent2022_event_base_loop (base=, 
> flags=) at event.c:1630
> #5  0xf5af23eb in progress_engine (obj=0x578ea7a0) at 
> src/util/progress_threads.c:52
> #6  0xf5df6316 in start_thread (arg=0xf5ac5b40) at pthread_create.c:465
> #7  0xf7105296 in clone () at ../sysdeps/unix/sysv/linux/i386/clone.S:108
> 
> Thread 1 (Thread 0xf5b4fe00 (LWP 29002)):
> #0  0xf7ed67f5 in ?? ()
> #1  0xf7ed6b43 in __vdso_clock_gettime ()
> #2  0xf7112961 in __GI___clock_gettime (clock_id=1, tp=0xffb74194) at 
> ../sysdeps/unix/clock_gettime.c:115
> #3  0xf5cc3297 in opal_timer_linux_get_usec_clock_

Bug#883987: boost1.62: FTBFS error: partial specialization ... after instantiation ... (with patch)

2018-01-06 Thread Pierre Saramito
Hi all,

Any news from the boost package maintainers for this bug ?

A patch is available for this bug (see attachement)
and it should be easy to fix it now.

It affects the Rheolef package: there is a BinNMU issue still pending.

Many thanks for your help and reactivity,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://ljk.imag.fr/membres/Pierre.Saramito
// bug description
// https://svn.boost.org/trac10/ticket/12534
// and its fix in boost-dev 1.65:
// https://github.com/boostorg/container/commit/5e4a107e82ab3281688311d22d2bfc2fddcf84a3
// i.e. remove from line 431 to 460 in include/boost/container/detail/pair.hpp

#undef FIX_BUG
#ifdef  FIX_BUG
#include 
#endif // FIX_BUG

#include 

static const bool is_enum = boost::is_enum >::value;

#include 

boost::container::flat_map m;

int main() {}
*** /usr/include/boost/container/detail/pair.hpp.orig	Tue Dec 12 12:15:26 2017
--- /usr/include/boost/container/detail/pair.hpp	Tue Dec 12 12:41:22 2017
***
*** 416,451 
  }  //namespace container_detail {
  }  //namespace container {
  
- 
- //Without this specialization recursive flat_(multi)map instantiation fails
- //because is_enum needs to instantiate the recursive pair, leading to a compilation error).
- //This breaks the cycle clearly stating that pair is not an enum avoiding any instantiation.
- template
- struct is_enum;
- 
- template
- struct is_enum< ::boost::container::container_detail::pair >
- {
-static const bool value = false;
- };
- 
- template
- struct is_enum< ::std::pair >
- {
-static const bool value = false;
- };
- 
- template 
- struct is_class;
- 
- //This specialization is needed to avoid instantiation of pair in
- //is_class, and allow recursive maps.
- template 
- struct is_class< ::boost::container::container_detail::pair >
- {
-static const bool value = true;
- };
- 
  #ifdef BOOST_NO_CXX11_RVALUE_REFERENCES
  
  template
--- 416,421 


Bug#883987: rheolef: FTBFS error: partial specialization ... after instantiation ...

2017-12-12 Thread Pierre Saramito
Hi Graham,

> Would you please quote the bug number?  I failed to find your bug report.

Here is the bug report:

   https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=884185

Hummm... I just realize now that I have do a mistake and assign this bug
to libcgal-dev instead of libboost-dev package when using Debian "bugreport".


> I think the thing to do here is reassign this bug to src:boost1.62 and
> mark that it affects src:rheolef.

Do you known how to do that with the Debian bug system ?

Many thanks for your help solving this issue,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://ljk.imag.fr/membres/Pierre.Saramito


- Mail original -
De: "ginggs" 
À: "PIERRE SARAMITO" , "883987" 
<883...@bugs.debian.org>
Cc: "Andreas Beckmann" 
Envoyé: Mardi 12 Décembre 2017 20:26:18
Objet: Re: Bug#883987: rheolef: FTBFS error: partial specialization ... after 
instantiation ...

Hi Pierre

(cc-ing Andreas in case he is not subscribed)

On 12 December 2017 at 15:13, Pierre Saramito  wrote:
> Hi Andreas,
>
> This problem do neither comes from Rheolef-6.7 nor from CGAL-4.11:
> it comes from Boost-1.62 combined with g++ 7.2 in Debian sid and testing.
>
> The bug has already be identified in the upstream version of Boost :
>   https://svn.boost.org/trac10/ticket/12534
> and it is now fixed in the upstream version Boost-1.65:
>   
> https://github.com/boostorg/container/commit/5e4a107e82ab3281688311d22d2bfc2fddcf84a3
> but this version is not yet available in Debian.
>
> I've just send a bug report to the Boost package, together with a patch for 
> Boost-1.62
> and later, until we will get Boost-1.65 in Debian.
>
> See also in attachment for a small test "pair_tst.cc" and the corresponding 
> Boost patch "pair_tst.patch"
>
> I hope it will be fixed soon.
>
> Best regards,
>
> Pierre
> --
> pierre.saram...@imag.fr
> Directeur de Recherche CNRS
> Laboratoire Jean Kuntzmann, Grenoble, France
> http://ljk.imag.fr/membres/Pierre.Saramito

Would you please quote the bug number?  I failed to find your bug report.

I think the thing to do here is reassign this bug to src:boost1.62 and
mark that it affects src:rheolef.

Regards
Graham



Bug#883987: rheolef: FTBFS error: partial specialization ... after instantiation ...

2017-12-12 Thread Pierre Saramito
Hi Andreas,

This problem do neither comes from Rheolef-6.7 nor from CGAL-4.11:
it comes from Boost-1.62 combined with g++ 7.2 in Debian sid and testing.

The bug has already be identified in the upstream version of Boost :
  https://svn.boost.org/trac10/ticket/12534
and it is now fixed in the upstream version Boost-1.65:
  
https://github.com/boostorg/container/commit/5e4a107e82ab3281688311d22d2bfc2fddcf84a3
but this version is not yet available in Debian.

I've just send a bug report to the Boost package, together with a patch for 
Boost-1.62
and later, until we will get Boost-1.65 in Debian.

See also in attachment for a small test "pair_tst.cc" and the corresponding 
Boost patch "pair_tst.patch"

I hope it will be fixed soon.

Best regards,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://ljk.imag.fr/membres/Pierre.Saramito
// bug description
// https://svn.boost.org/trac10/ticket/12534
// and its fix in boost-dev 1.65:
// https://github.com/boostorg/container/commit/5e4a107e82ab3281688311d22d2bfc2fddcf84a3
// i.e. remove from line 431 to 460 in include/boost/container/detail/pair.hpp

#undef FIX_BUG
#ifdef  FIX_BUG
#include 
#endif // FIX_BUG

#include 

static const bool is_enum = boost::is_enum >::value;

#include 

boost::container::flat_map m;

int main() {}
*** /usr/include/boost/container/detail/pair.hpp.orig	Tue Dec 12 12:15:26 2017
--- /usr/include/boost/container/detail/pair.hpp	Tue Dec 12 12:41:22 2017
***
*** 416,451 
  }  //namespace container_detail {
  }  //namespace container {
  
- 
- //Without this specialization recursive flat_(multi)map instantiation fails
- //because is_enum needs to instantiate the recursive pair, leading to a compilation error).
- //This breaks the cycle clearly stating that pair is not an enum avoiding any instantiation.
- template
- struct is_enum;
- 
- template
- struct is_enum< ::boost::container::container_detail::pair >
- {
-static const bool value = false;
- };
- 
- template
- struct is_enum< ::std::pair >
- {
-static const bool value = false;
- };
- 
- template 
- struct is_class;
- 
- //This specialization is needed to avoid instantiation of pair in
- //is_class, and allow recursive maps.
- template 
- struct is_class< ::boost::container::container_detail::pair >
- {
-static const bool value = true;
- };
- 
  #ifdef BOOST_NO_CXX11_RVALUE_REFERENCES
  
  template
--- 416,421 


Bug#884185: boost1.62 FTBFS error: partial specialization ... after instantiation ... (with attachment files)

2017-12-12 Thread Pierre Saramito
Package: libcgal-dev
Version: 4.11-2
Severity: grave
Justification: renders package unusable
Tags: upstream newcomer

Dear Maintainer,

Boost-1.62 fails to compile the following c++ file :

g++ pair_tst.cc -o pair_tst.cc

in sid and buster (testing) with g++ 7.2.
The output is:
In file included from 
/usr/include/boost/container/detail/flat_tree.hpp:29:0,
 from /usr/include/boost/container/flat_map.hpp:29,
 from pair_tst.cc:16:
/usr/include/boost/container/detail/pair.hpp:433:8: error: partial 
specialization of ‘struct boost::is_enum >’ after 
instantiation of ‘struct boost::is_enum >’ [-fpermissive]
struct is_enum< ::std::pair >
^~~~

See the "pair_tst.cc" file in attachment for reproducing this bug.
This bug actually causes some debian package build to fail in sid
and testing (see e.g. bug: #883987 ).

The bug has already be identified in the upstream version of Boost :
  https://svn.boost.org/trac10/ticket/12534
and it is now fixed in boost-dev 1.65:
  
https://github.com/boostorg/container/commit/5e4a107e82ab3281688311d22d2bfc2fddcf84a3
The fix simply consists of removing from line 431 to 460
in file include/boost/container/detail/pair.hpp
See also the "pair_tst.patch" file in attachment.

Could you please includes this patch in the debianization of
the Boost package ?

Best regards,

Pierre Saramito

-- System Information:
Debian Release: buster/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.13.0-1-amd64 (SMP w/32 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages libcgal-dev depends on:
ii  libboost-dev  1.62.0.1
ii  libboost-program-options-dev  1.62.0.1
ii  libboost-system-dev   1.62.0.1
ii  libboost-thread-dev   1.62.0.1
ii  libcgal13 4.11-2
ii  libgmp-dev [libgmp10-dev] 2:6.1.2+dfsg-1.1
ii  libmpfr-dev   3.1.6-1
ii  zlib1g-dev1:1.2.8.dfsg-5

libcgal-dev recommends no packages.

Versions of packages libcgal-dev suggests:
pn  libmpfi-dev  
pn  libntl-dev   
pn  libtbb-dev   

-- no debconf information

--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://ljk.imag.fr/membres/Pierre.Saramito// bug description
// https://svn.boost.org/trac10/ticket/12534
// and its fix in boost-dev 1.65:
// https://github.com/boostorg/container/commit/5e4a107e82ab3281688311d22d2bfc2fddcf84a3
// i.e. remove from line 431 to 460 in include/boost/container/detail/pair.hpp

#undef FIX_BUG
#ifdef  FIX_BUG
#include 
#endif // FIX_BUG

#include 

static const bool is_enum = boost::is_enum >::value;

#include 

boost::container::flat_map m;

int main() {}
*** /usr/include/boost/container/detail/pair.hpp.orig	Tue Dec 12 12:15:26 2017
--- /usr/include/boost/container/detail/pair.hpp	Tue Dec 12 12:41:22 2017
***
*** 416,451 
  }  //namespace container_detail {
  }  //namespace container {
  
- 
- //Without this specialization recursive flat_(multi)map instantiation fails
- //because is_enum needs to instantiate the recursive pair, leading to a compilation error).
- //This breaks the cycle clearly stating that pair is not an enum avoiding any instantiation.
- template
- struct is_enum;
- 
- template
- struct is_enum< ::boost::container::container_detail::pair >
- {
-static const bool value = false;
- };
- 
- template
- struct is_enum< ::std::pair >
- {
-static const bool value = false;
- };
- 
- template 
- struct is_class;
- 
- //This specialization is needed to avoid instantiation of pair in
- //is_class, and allow recursive maps.
- template 
- struct is_class< ::boost::container::container_detail::pair >
- {
-static const bool value = true;
- };
- 
  #ifdef BOOST_NO_CXX11_RVALUE_REFERENCES
  
  template
--- 416,421 


Bug#884184: boost1.62 FTBFS error: partial specialization ... after instantiation ...

2017-12-12 Thread Pierre Saramito
Package: libcgal-dev
Version: 4.11-2
Severity: grave
Justification: renders package unusable
Tags: upstream newcomer

Dear Maintainer,

Boost-1.62 fails to compile the following c++ file :

g++ pair_tst.cc -o pair_tst.cc

in sid and buster (testing) with g++ 7.2.
The output is:
In file included from 
/usr/include/boost/container/detail/flat_tree.hpp:29:0,
 from /usr/include/boost/container/flat_map.hpp:29,
 from pair_tst.cc:16:
/usr/include/boost/container/detail/pair.hpp:433:8: error: partial 
specialization of ‘struct boost::is_enum >’ after 
instantiation of ‘struct boost::is_enum >’ [-fpermissive]
struct is_enum< ::std::pair >
^~~~

See the "pair_tst.cc" file in attachment for reproducing this bug.
This bug actually causes some debian package build to fail in sid
and testing (see e.g. bug: #883987 ).

The bug has already be identified in the upstream version of Boost :
  https://svn.boost.org/trac10/ticket/12534
and it is now fixed in boost-dev 1.65:
  
https://github.com/boostorg/container/commit/5e4a107e82ab3281688311d22d2bfc2fddcf84a3
The fix simply consists of removing from line 431 to 460
in file include/boost/container/detail/pair.hpp
See also the "pair_tst.patch" file in attachment.

Could you please includes this patch in the debianization of
the Boost package ?

Best regards,

Pierre Saramito

-- System Information:
Debian Release: buster/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.13.0-1-amd64 (SMP w/32 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages libcgal-dev depends on:
ii  libboost-dev  1.62.0.1
ii  libboost-program-options-dev  1.62.0.1
ii  libboost-system-dev   1.62.0.1
ii  libboost-thread-dev   1.62.0.1
ii  libcgal13 4.11-2
ii  libgmp-dev [libgmp10-dev] 2:6.1.2+dfsg-1.1
ii  libmpfr-dev   3.1.6-1
ii  zlib1g-dev1:1.2.8.dfsg-5

libcgal-dev recommends no packages.

Versions of packages libcgal-dev suggests:
pn  libmpfi-dev  
pn  libntl-dev   
pn  libtbb-dev   

-- no debconf information

--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://ljk.imag.fr/membres/Pierre.Saramito



Bug#871811: FTBFS with CGAL 4.11

2017-11-12 Thread Pierre Saramito
Dear Joachim,

Many thanks for your patch: I am integrating it
in the debian files of the Rheolef package in order
to support the new CGAL 4.11 version.
Sorry for my late response, I was travelling 
in new zealand for conferences... 

The path for CGAL will be integrated in the fortcoming 
Rheolef upstream versions.


Kind regards,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://ljk.imag.fr/membres/Pierre.Saramito



Bug#826960: mumps: Please package with metis and parmetis

2016-06-10 Thread Pierre Saramito
Source: mumps
Severity: wishlist

Dear Adam,

It would be nice to have libmumps-metis-dev and libmumps-parmetis-dev
as alternatives to libmumps-scotch-dev and libmumps-ptscotch-dev packages:
please, could you package mumps with (par)metis also ?

Best wishes,

Pierre


-- System Information:
Debian Release: stretch/sid
  APT prefers testing-updates
  APT policy: (500, 'testing-updates'), (500, 'testing')
Architecture: i386 (i686)

Kernel: Linux 4.3.0-1-686-pae (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito



Bug#811590: FTBFS with GCC 6: statement indented as if it were guarded by version graph

2016-06-08 Thread Pierre Saramito
Dear Martin Michlmayr,

Many thanks for your bug report.
A new upstream version rheolef-6.7 of the source package
should now compile with g++-6 and fix this bug.

Best wishes,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito



Bug#824788: FTBFS in sid: recipe for target 'rheolef.pdf' failed

2016-06-08 Thread Pierre Saramito
Dear Sébastien Villemot,

Many thanks for your bug report.
The new upstream version rheolef-6.7 should fix it now.

Best wishes,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito



Bug#807861: Help needed for uploading a new version 6.6-2 of the Rheolef package

2015-12-14 Thread Pierre Saramito
Dear Anton, dear FTP maintainers,

Notice that the same compilation problem occurs with both s390x and armhf 
archs, which are both official Debian ports.
So, both these two archs should be suspended.

Thanks,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito

- Mail original -
De: "Anton Gladky" 
À: "Pierre Saramito" 
Cc: 807...@bugs.debian.org
Envoyé: Lundi 14 Décembre 2015 08:57:53
Objet: Re: Help needed for uploading a new version 6.6-2 of the Rheolef package

Hi Pierre,

uploading the new package version with updated list of archs
will not help it to migrate to testing, because old version still exists
on s390x. It should be removed firstly from archive.

Regards

Anton


2015-12-14 8:24 GMT+01:00 Pierre Saramito :
> Dear Anton, dear FTP masters,
>
> There is no need to remove this package on s390x-arch.



Bug#807861: Help needed for uploading a new version 6.6-2 of the Rheolef package

2015-12-14 Thread Pierre Saramito
Hi Anton, 

Ok, I've not yet experimented such a pocedure with Debian,
so, please do what is required in the Debian procedure.

Do you known a way (an access) to test for the compilation of the package on a 
s390x ?
The upstream source package should be probably fixed with 
some very minor changes for s390x arch (previous source versions was ok).
But do not have any access to such architecture in my environment.

Many thanks for your help,

Pierre
--
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Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
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- Mail original -
De: "Anton Gladky" 
À: "Pierre Saramito" 
Cc: 807...@bugs.debian.org
Envoyé: Lundi 14 Décembre 2015 08:57:53
Objet: Re: Help needed for uploading a new version 6.6-2 of the Rheolef package

Hi Pierre,

uploading the new package version with updated list of archs
will not help it to migrate to testing, because old version still exists
on s390x. It should be removed firstly from archive.

Regards

Anton


2015-12-14 8:24 GMT+01:00 Pierre Saramito :
> Dear Anton, dear FTP masters,
>
> There is no need to remove this package on s390x-arch.



Bug#807861: Help needed for uploading a new version 6.6-2 of the Rheolef package

2015-12-13 Thread Pierre Saramito
Dear Anton, dear FTP masters, 

There is no need to remove this package on s390x-arch.

The s390x arch, that causes some compilation problem,
is already explicitely removed from the arch list in debian/control
in the new 6.6-2 debianization file.

There is only need to upload the new 6.6-2 debianization
files (the rheolef source files 6.6 are unchanged) : see
  svn://anonscm.debian.org/debian-science/packages/rheolef/trunk/


So, please, clould you close this bug #807861 
and upload the new 6.6-2 version ?

Many thanks for your help,

Pierre
--
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Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito

- Mail original -
De: "Anton Gladky" 
À: "Pierre Saramito" 
Envoyé: Dimanche 13 Décembre 2015 22:08:38
Objet: Re: Help needed for uploading a new version 6.6-2 of the Rheolef package

Hi Pierre,

you do not need to explicitly remove package
from the Arch-list. You just need to file a bug
against ftp.debian.org. I did it for you this time.

Best regards

Anton


2015-12-09 10:16 GMT+01:00 Pierre Saramito :
> Dear Anton,
>
> Here is a glentle remainder, for uploading version 6.6-2 of the rheolef 
> package.
>
>
> I just commit with svn a new release 6.6-2 of the debianisation
> of the rheolef package: it fixes the current problem.
> The s390x architecture is temporarily removed for this package.
>
> The source version is unchanged (6.6).
>
> Could you please upload it in debian ?
>
> Many thanks for your help.
>
> Best regards,
>
> Pierre
>
> --
> pierre.saram...@imag.fr
> Directeur de Recherche CNRS
> Laboratoire Jean Kuntzmann, Grenoble, France
> http://www-ljk.imag.fr/membres/Pierre.Saramito
>
> - Mail original -
> De: "Pierre Saramito" 
> À: "Anton Gladky" 
> Cc: "Pierre Saramito" 
> Envoyé: Samedi 21 Novembre 2015 17:59:31
> Objet: Help needed for uploading a new version 6.6-2 of the Rheolef package
>
> Hi Anton,
>
> I just commit with svn a new release 6.6-2 of the debianisation
> of the rheolef package: the s390x architecture is temporarily
> removed for this package.
>
> The source version is unchanged (6.6).
>
> Could you please upload it in debian ?
>
> Many thanks for your help.
>
> Best regards,
>
> Pierre
> --
> pierre.saram...@imag.fr
> Directeur de Recherche CNRS
> Laboratoire Jean Kuntzmann, Grenoble, France
> http://www-ljk.imag.fr/membres/Pierre.Saramito
>
> - Mail original -
> De: "Anton Gladky" 
> À: "Pierre Saramito" 
> Envoyé: Samedi 24 Octobre 2015 10:34:27
> Objet: Re: Help needed for uploading a new version 6.6 of the Rheolef package
>
> Hi Pierre,
>
> I have uploaded this package some days ago. It looks like there
> is a problem with the build on s390x.  One can try to fix it or request
> removal rheolef on this platform. Otherwise the package will
> not be able to migrate to testing.
>
> Best regards
>
> Anton
>
> 2015-09-29 15:03 GMT+02:00 Pierre Saramito :
>> I commit few days ago in svn a new version the debianization of rheolef :
>> it fixes the problem related to g++ 5 in sid and testing (bug #778106 ).



Bug#778106: HELP needed for uploading a new version 6.6 of the Rheolef package (english translation)

2015-09-25 Thread Pierre Saramito
Here is an english translation of the previous message, for the bug tracker.


Hi Sylvestre !

I just commit in svn a new version the debianization of rheolef :
it fixes the problem related to g++ 5 in sid and testing (bug #778106 ).

This corresponds also to a new version 6.6 of the sources :
  http://www-ljk.imag.fr/membres/Pierre.Saramito/rheolef/rheolef-6.6.tar.gz

Could you please makes the changes in debian ?

Many thaks for your help,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito

- Mail original -
De: "Pierre Saramito" 
À: "Sylvestre Ledru" , 778...@bugs.debian.org
Cc: "Pierre Saramito" 
Envoyé: Vendredi 25 Septembre 2015 13:20:09
Objet: HELP needed for uploading a new version 6.6 of the Rheolef package

Bonjour Sylvestre,

Je viens de remonter sous svn une nouvelle version de la debianisation de 
rheolef :
cela corrige le nouveau probleme a propos de g++ 5 sous sid et testing (bug 
#778106 ).

Cela correspond aussi a une nouvelle version 6.6 des sources :
  http://www-ljk.imag.fr/membres/Pierre.Saramito/rheolef/rheolef-6.6.tar.gz

Serait-il possible de faire le chargement dans debian ?

En te remerciant par avance,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito



Bug#778106: HELP needed for uploading a new version 6.6 of the Rheolef package

2015-09-25 Thread Pierre Saramito
Bonjour Sylvestre,

Je viens de remonter sous svn une nouvelle version de la debianisation de 
rheolef :
cela corrige le nouveau probleme a propos de g++ 5 sous sid et testing (bug 
#778106 ).

Cela correspond aussi a une nouvelle version 6.6 des sources :
  http://www-ljk.imag.fr/membres/Pierre.Saramito/rheolef/rheolef-6.6.tar.gz

Serait-il possible de faire le chargement dans debian ?

En te remerciant par avance,

Pierre
--
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito



Bug#748130: scotch autoremoval from jessie not usefull : only stable/amd64 package has RC bug

2014-09-03 Thread Pierre Saramito
Dear all,

The RC bug #748130 founded in the scotch library 
causes to mark for autoremoval many packages in the jessie distribution.

Notice that the bug do not concern the actual jessie distribution :
it is restricted to the stable one on the amd64 architecture.
Recall that, in that specific case, the actual stable/amd64 scotch package
links to both mipch and openmpi and this produce a segfault
at run time. A simple recompilation of the stable scotch packages
for amd64 should fix this bug (see bug #748130 for more).

So, the jessie scotch packages are not concerned by this bug and
all packages that depend one do not need to be marked for autoremoval.

Regards,

Pierre
-- 
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Directeur de Recherche CNRS
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Bug#748130: on wheezy/amd64: libscotch-5.1 depends on mpich while mpi-default is openmpi

2014-05-14 Thread Pierre Saramito
Package: libscotch-5.1
Version: 5.1.12b.dfsg-2+b1
Severity: serious

Hi all,

The stable (wheezy) debian package "libscotch-5.1" depends on MPI lib as :

  dep: libmpich2-3   [amd64, mips, mipsel, s390, s390x]
  dep: libopenmpi1.3 [not amd64, mips, mipsel, s390, s390x]

while the "mpi-default-bin" package has the following dependencies :

  dep: mpich2   [mips, mipsel, s390, s390x]
  dep: openmpi-bin  [not mips, mipsel, s390, s390x]

The same bug occurs for all MPI-dependent packages from the "scotch" source 
package.
Thus, on amd64, the scotch library is not usable:
package depending on scotch will compile but segfault at run time.

A possible solution should be to recompile the wheezy/amd64 scotch package.

-- System Information:
Debian Release: wheezy
  APT prefers stable
  APT policy: (500, 'stable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 3.2.0-4-amd64 (SMP w/6 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages libscotch-5.1 depends on:
ii  libc6  2.13-38+deb7u1
ii  libcr0 0.8.5-2
ii  libmpich2-31.4.1-4.2
ii  zlib1g 1:1.2.7.dfsg-13

libscotch-5.1 recommends no packages.
libscotch-5.1 suggests no packages.
-- no debconf information

Yours sincerely,

Pierre Saramito
-- 
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Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
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Bug#714185: rheolef: Vcs-Svn does not work

2013-09-17 Thread Pierre Saramito
Hi Sebastian,

> From Sebastian:
> Sorry, my bad. I always forget that anonscm doesn't need svn in the
> URLs. It should be
> svn://anonscm.debian.org/debian-science/packages/rheolef/trunk/.
> 
> The rationale for the change is explained in lintian's
> vcs-fields-not-canonical tag and the referenced mail there.

Many thanks: the debian/control file is now fixed in svn,
it will be ready for the next upload together with the
forthcoming upstream release rheolef-6.5.

Regards,

Pierre
-- 
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Directeur de Recherche CNRS
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Bug#715672: [Mayhem] Bug report on rheolef: bamg crashes with exit status 139

2013-09-17 Thread Pierre Saramito
Hi Alexandre,

> From Alexandre Rebert:
> Package: rheolef
> 
> bamg crashes with exit status 139. We confirmed the crash by
> re-running it in a fresh debian unstable installation.

Many thanks for your help: the bug is now fixed in the forthcoming
rheolef-6.5 that will be available with the next upload.

The command now exit cleanly with error status 1.

 % bamg -g A -H
bamg: missing argument for option `-H'
HINT: see documentation or enter bamg -h
 % echo $?
1

Regards,

Pierre
-- 
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Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito

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Bug#716110: [Mayhem] Bug report on rheolef: mkgeo_grid_1d crashes with exit status 139

2013-09-17 Thread Pierre Saramito
Hi Alexandre,

> From Alexandre Rebert:
> Package: rheolef
> 
> mkgeo_grid_1d crashes with exit status 139. We confirmed the crash by
> re-running it in a fresh debian unstable installation.

Many thanks for your help: the bug is now fixed in the forthcoming
rheolef-6.5 that will be available with the next upload.

The command now exit cleanly with error status 1.

 % mkgeo_grid_1d -a
./mkgeo_grid_1d: missing argument for option `-a'
usage:
./mkgeo_grid_1d [n=10] [-a float=0] [-b float=1] [-[no]boundary] 
[-[no]sides] [-[no]region] [-[no]corner] [-v4] [-[dis]ordered]
example:
./mkgeo_grid_1d 10

  % echo $?
1

Regards,

Pierre
-- 
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Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito


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Bug#714204: rheolef: FTBFS twice in a row

2013-09-17 Thread Pierre Saramito
Hi Sebastian,

> From Sebastian:
> rheolef fails to build twice in a row:
> |  dpkg-source -b rheolef-6.4
> | dpkg-source: info: using source format `3.0 (quilt)'
> | dpkg-source: info: building rheolef using existing ./rheolef_6.4.orig.tar.gz
> | dpkg-source: error: cannot represent change to 
> rheolef-6.4/include/rheolef_seq.h:

I've just added a "make distclean" in the debian/rules clean target
and all is fine now.
The bug will be fixed with the next upload, together with
the next upstream version rheolef-6.5.

Many thanks for your help,

Pierre
-- 
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Directeur de Recherche CNRS
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Bug#716547: [Mayhem] Bug report on rheolef: mkgeo_grid_2d crashes with exit status 139

2013-09-17 Thread Pierre Saramito
Hi Alexandre,

> From Alexandre Rebert:
> Package: rheolef
> 
> mkgeo_grid_2d crashes with exit status 139. We confirmed the crash by
> re-running it in a fresh debian unstable installation.

Many thanks for your help: the bug is now fixed in the forthcoming
rheolef-6.5 that will be available with the next upload.

The command now exit cleanly with error status 1.

 % mkgeo_grid_2d -bobound
./mkgeo_grid_2d: invalid command line argument `-bobound'
usage:
./mkgeo_grid_2d [-t|-q] [nx=10] [ny=nx] [-a float=0] [-b float=1] [-c 
float=0] [-d float=1] [-[no]boundary] [-[no]sides] [-[no]region] [-[no]corner] 
[-rz|-zr] [-v4]
example:
./mkgeo_grid_2d -t 10
./mkgeo_grid_2d -t 10 20
  % echo $?
1

Regards,

Pierre
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Bug#701347: rheolef: ftbfs with GCC-4.8

2013-09-17 Thread Pierre Saramito
Hi Joachim and Matthias,

The forthcoming upstream release rheolef-6.5 compiles
well with g++-4.8 and boost-1.54: the bug should be fixed
soon with the next upload.

Many thanks for your help,

Pierre

On Sun 07 Jul 2013 � 12:37 +0200, Joachim Reichel wrote :
> Package: rheolef
> Followup-For: Bug #701347
> 
> I am not able to reproduce this bug with g++ 4.8.1-5.
> 
> Joachim
> 
> -- System Information:
> Debian Release: 7.1
>   APT prefers stable-updates
>   APT policy: (810, 'stable-updates'), (800, 'stable'), (700, 'testing')
> Architecture: amd64 (x86_64)
> Foreign Architectures: i386
> 
> Kernel: Linux 3.7-trunk-amd64 (SMP w/4 CPU cores)
> Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
> Shell: /bin/sh linked to /bin/dash
> 
> -- 
> debian-science-maintainers mailing list
> debian-science-maintain...@lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

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Bug#714185: rheolef: Vcs-Svn does not work

2013-09-16 Thread Pierre Saramito
Hi Sebastian,

> From Sebastian Ramacher:
> The repository declaed in Vcs-Svn does not work:
> | % debcheckout rheolef
> [...]
> | svn co svn://svn.debian.org/svn/debian-science/packages/rheolef/trunk/ 
> rheolef ...
> [...]
> | checkout failed (the command above returned a non-zero exit code)

I've just tried the same command and it works fine (see attachment).
Perhaps a temporary failure of the svn.debian.org sever ?

 
> The host should be anonscm.debian.org instead.

After a simple try:
 % svn co svn://annonscm.debian.org/svn/debian-science/packages/rheolef/trunk/ 
rheolef 
svn: E670002: Unable to connect to a repository at URL 
'svn://annonscm.debian.org/svn/debian-science/packages/rheolef/trunk'
svn: E670002: Nom d'hôte inconnu 'annonscm.debian.org'
It seems that this host has no svn server ?

A ping at these hosts gives:
 % ping svn.debian.org
PING svn.debian.org (217.196.43.140) 56(84) bytes of data.

 % ping anonscm.debian.org
PING anonscm.debian.org (217.196.43.132) 56(84) bytes of data.

Clearly, there are different machines with different IP.
Are you sure that anonscm.debian.org is the right host for svn ?
 
Regards

Pierre Saramito
-- 
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito
debcheckout rheolef
declared svn repository at 
svn://svn.debian.org/svn/debian-science/packages/rheolef/trunk/
svn co svn://svn.debian.org/svn/debian-science/packages/rheolef/trunk/ rheolef 
...
Arheolef/debian
Arheolef/debian/control
Arheolef/debian/compat
Arheolef/debian/shlibs.librheolef1.X
Arheolef/debian/changelog
Arheolef/debian/docs
Arheolef/debian/rheolef.install
Arheolef/debian/rules
Arheolef/debian/librheolef-dev.install
Arheolef/debian/rheolef-doc.install
Arheolef/debian/source
Arheolef/debian/source/format
Arheolef/debian/librheolef1.install
Arheolef/debian/watch
Arheolef/debian/rheolef-doc.doc-base.usrman
Arheolef/debian/copyright
Arheolef/debian/rheolef-doc.doc-base.refman
Arheolef/debian/README.Debian
Révision 46282 extraite.
repository only contains the debian directory, using apt-get source
Lecture des listes de paquets... Fait
Construction de l'arbre des dépendances   
Lecture des informations d'état... Fait
Note : la maintenance du paquet de « rheolef » est réalisée dans le système de 
suivi de versions « Svn » à l'adresse :
svn://svn.debian.org/svn/debian-science/packages/rheolef/trunk/
Nécessité de prendre 33,4 Mo dans les sources.
Réception de : 1 http://www-ljk.imag.fr/membres/Pierre.Saramito/rheolef/source/ 
./ rheolef 6.4-2 (dsc) [1 449 B]
Réception de : 2 http://www-ljk.imag.fr/membres/Pierre.Saramito/rheolef/source/ 
./ rheolef 6.4-2 (tar) [33,4 MB]
Réception de : 3 http://www-ljk.imag.fr/membres/Pierre.Saramito/rheolef/source/ 
./ rheolef 6.4-2 (diff) [7 675 B]
33,4 Mo réceptionnés en 2s (11,7 Mo/s)
dpkg-source: avertissement: extraction d'un paquet source non signé 
(rheolef_6.4-2.dsc)
dpkg-source: info: extraction de rheolef dans rheolef-6.4
dpkg-source: info: extraction de rheolef_6.4.orig.tar.gz
dpkg-source: info: extraction de rheolef_6.4-2.debian.tar.gz


Bug#701347: Bug #701347 rheolef: ftbfs with GCC-4.8

2013-05-27 Thread Pierre Saramito
Hi Matthias,

I have problem to install experimental g++-4.8 in sid as you suggests:

  apt-get -t experimental install g++ g++-4.7 g++-4.8 libc6-dev

Apt reaches depency problems (same also with aptitude).

So, I'm waiting for g++-4.8 to be really available in sid or jessie
for treating this bug.

Cheers,

Pierre
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Directeur de Recherche CNRS
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Bug#709155: Debian Bug#709155 [librheolef-dev] librheolef-dev: missing Breaks+Replaces: rheolef (<< 6.4)

2013-05-27 Thread Pierre Saramito
Hi Andreas,

Many thanks for your patch: its now integrated in the "debian/control"
file of the Rheolef package and I've checked that all is now fine 
when replacing an old version of the package by a new one.

The bug should be fixed now and I'll looking for an
upload of the new version.

Cheers,

Pierre
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Bug#690766: Submitted bug: rheolef_6.1-2 is wrongly packaged in sid & wheezy ; a fix, as rheolef_6.1-3, is now available

2012-10-17 Thread Pierre Saramito
Package: rheolef
Version: 6.1-3
Severity: grave
Tags: patch

Dear debian maintainers,

The rheolef_6.1-2 package is wrongly distributed in sid and wheezy.

The rheolef debianization files debian/* are now fixed and the fixed version is 
available
as rheolef_6.1-3 in svn.

Please could you upgrade the rheolef package in sid and testing ?

Yours sincelery,

Pierre
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-- System Information:
Debian Release: wheezy/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 3.2.0-3-amd64 (SMP w/6 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages rheolef depends on:
ii  libboost-iostreams1.49.0  1.49.0-3.1
ii  libboost-thread1.49.0 1.49.0-3.1
ii  libc6 2.13-35
ii  libcgal9  4.0-4
ii  libgcc1   1:4.7.1-7
ii  libgmp10  2:5.0.5+dfsg-2
ii  libopenmpi1.3 1.4.5-1
ii  librheolef-dev6.1-3
ii  rheolef-doc   6.1-3

Versions of packages rheolef recommends:
ii  gmsh  2.6.1.dfsg-4
ii  gnuplot   4.6.0-8
ii  mayavi2   4.1.0-1
ii  paraview  3.14.1-6
ii  tcl-vtk   5.8.0-13+b1

rheolef suggests no packages.

-- no debconf information

-- 
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito


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Bug#661689: Bad formatting of package description, perhaps improvable wording

2012-04-03 Thread Pierre . Saramito

Dear Justin and Martin,

Many thanks for this carreful reading of the debian description.
My mother language is not english but french, so your comments
are really important.



From: Justin B Rye 
(By the way, just before sending this I've found
https://www.projet-plume.org/fr/fiche/rheolef
which looks like the French original version.)


Yes, the original description was here
and at the Rheolef home page  
http://www-ljk.imag.fr/membres/Pierre.Saramito/rheolef





obWhyTheName: something to do with logiciel and éléments finis...


Rheolef means "rheo" + "ef". Rheo is a grec word that meas material
that flows (water, mud, blood, etc). EF means "éléments finis".
This library was initiated from applications to fluid mechanics
with nonlinear and complex behavior (we speak now of Non-Newtonian fluids).
Its application is now more general, applied mathematics, but the original
name maintains some relations to these origins.



so how about:
 Description: efficient Finite Element environment


Ok, it sounds better to me too!



Revised version and patch attached.


Many thanks, I integrate it for the next release of the package.


I was in Edinburgh in February, probably I will come back to travel by bike
in Scotland.

Pierre
--
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Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito



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Bug#630864: rheolef and freefem++: error when trying to install together

2011-07-07 Thread Pierre Saramito
Hi, dear maintainers of Freefem++ !

As maintainer of the rheolef package I also use the bamg mesh generator.
Instead of renamming it as ffbamg, coud your consider to separately package 
bamg ?
By this way, both rheolef & ff could share the same bamg package dependency.

Pierre
-- 
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito



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Bug#630864: rheolef and freefem++: error when trying to install together

2011-06-23 Thread Pierre Saramito
Hi,
 
> Here is a list of files that are known to be shared by both packages
> (according to the Contents file for sid/amd64, which may be slightly out of 
> sync):
> 
>   /usr/bin/bamg

Could you consider to create some specific debian package(s) for the bamg mesh 
generator (bin & lib) ?
Then, both freefem++ & rheolef could depend on ?
Notice that rheolef depends only upon the binary /usr/bin/bamg
 
Pierre Saramito
Maintainer for rheolef
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Laboratoire Jean Kuntzmann, Grenoble, France
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Bug#612621: Bug#619935: Bugs #619935 & #612621 : most debian/* files rewritten + patches

2011-04-04 Thread Pierre Saramito
Hello !

> > From Adam:
> > Already I can see a few issues:
> >   * I noticed that you removed -I/usr/include/lam from the CCS and
> > CCD commands.  I don't remember the exact reasons, but those
> > were required for the LAM architectures.  /usr/include/mpi
> > should be a symlink to /usr/include/lam, but for some reason
> > that didn't work.  I think it's a worthy goal to try to remove
> > that for the next upload, but would rather leave it in for this
> > one.

I've not tested on lam achitectures.
So I'have a question:
 openmpi does not support yet multi-threads
 (see eg http://www.open-mpi.org/faq/?category=supported-systems#thread-support 
)
 and we have deleted -DSCOTCH_PTHREAD in CFLAGS.

Is lam thread-safe ?
 There is a FAQ here http://www.lam-mpi.org/faq/category7.php3#question5
 but it's not clear for me...


> >   * In libptscotch-5.1.install, int/lib/libpt*.so is ambiguous: it
> > includes both the versioned shared libraries and the symlinks
> > which belong in the -dev package.  If those file names are
> > ambiguous, then only the package order determines which files go
> > into which package, and that is not good.  Same for
> > libscotch-5.1.install.

Oups ! yes the symlinks .so should be in libxxx-dev packages.


> Are we ready to upload?

Let's go !

Thank you for your work,

Pierre
-- 
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito



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Bug#619935: src:scotch: FTBFS on several arches due to lex issue

2011-03-30 Thread Pierre Saramito
Hi Adam and Johannes,

> > From Adam: 
> > parser_ll.l:123:31: error: 'yylval' undeclared (first use in this function)
 
> From Johannes: 
> I couldn't (for some unknown reason) reproduce this in a pbuilder


I get the last debian/ files from git, then run git-buildpackage
and finlay pbuilder, this on two arch (i686 and amd64).
I run for each pbuilder on sid, wheezy, sqsueeze
and also ubuntu natty, maverick, lucid.
The result is the same for all these 12 cases:

  I couldn reproduce the problem. 

Also, I dont see any lex problem on debian logs:
  https://buildd.debian.org/status/package.php?p=scotch
despite some logs are out of date.

What are the conditions for your run ?
 - Is it with pbuilder ?
 - If any, is it on sid ?

Could you please give us some details in order to be able
to reproduce the bug ?

Pierre
-- 
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito



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Bug#612621: ERROR: SCOTCH_dgraphInit: linking with both libScotch and libPTScotch is not allowed

2011-03-28 Thread Pierre Saramito
Hi Johannes and Adam,

> >> Adam: Thanks for your work on this package! Could you please
> >> incorporate this fix in the next upload?
> >
> > Sure, thanks for the patch.  Oh wait -- I think the libscotch$(LIB)
> > dependency and -lscotch linkage were needed for binutils-gold, have you
> > tested the patch with binutils-gold?

I have not yet tested binutils-gold.

I recompile scotch-5.11 from original distrib and it works fine for
both the two previous tests from Johannes and also from more complex
tests together with the pastix solver and the distributed version
of the rheolef distribution (large ordering for matrix-vector systems).
My machine is a i683 under wheezy:
uname -a
Linux salsa 2.6.32-5-686 #1 SMP Tue Mar 8 21:36:00 UTC 2011 i686 
GNU/Linux

Here is a short of the compilation :
wget https://gforge.inria.fr/frs/download.php/28043/scotch_5.1.11.tar.gz
tar xvzf scotch_5.1.11.tar.gz
cd scotch_5.1.11
cp  Make.inc/Makefile.inc.i686_pc_linux2.shlib Makefile.inc
vi Makefile.inc
#1) CFLAGS add : -I/usr/lib/openmpi/include
#2) CFLAGS del : -DSCOTCH_PTHREAD since its buggy in openmpi
#   but conserve -DCOMMON_PTHREAD that is ok
make scotch ptscotch
-> shared libs *.so

Then local install by hand with DESTDIR=$HOME/sys and then run tests:

c++ -I/usr/local/include/scotch -o ptscotch_test ptscotch_test.cpp 
-DSCOTCH_PTSCOTCH -L/usr/local/lib  -lptscotch -lptscotcherr -lz
./ptscotch_test
-> ok

# also with both ptscoth & scotch :
mpic++ -I$HOME/sys/include/scotch -o ptscotch_test ptscotch_test.cpp 
-DSCOTCH_PTSCOTCH -L$HOME/sys/lib  -lptscotch -lptscotcherr -lscotch -lz -lrt
./ptscotch_test
-> ok !

# also the same with the second test: ptscotch_test2.cpp

So, the problem could be in the scotch/debian files: I will try to take a look 
at these
fileb (I dont known about others portability constrainst, such as 
binutils-golds).

Many thanks for your work on the scotch package !

Pierre
-- 
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito



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Bug#612621: ERROR: SCOTCH_dgraphInit: linking with both libScotch and libPTScotch is not allowed

2011-03-28 Thread Pierre Saramito
Hello !

Despite the recent patch applied in version 5.1.11.dfgs-4,
the bug seems to be still present on sid/amd64 :

uname -a
Linux mobydick 2.6.32-5-amd64 #1 SMP Wed Jan 12 03:40:32 UTC 2011 
x86_64 GNU/Linux

apt-cache policy libptscotch-dev
libptscotch-dev:
  Installé : 5.1.11.dfsg-4
  Candidat : 5.1.11.dfsg-4
 Table de version :
 *** 5.1.11.dfsg-4 0
500 http://ftp.fr.debian.org/debian/ sid/main amd64 Packages
100 /var/lib/dpkg/status


mpic++ -o ptscotch_test ptscotch_test.cpp -DSCOTCH_PTSCOTCH 
-I/usr/include/scotch -lptscotch -lptscotcherr
./ptscotch_test
(0): ERROR: SCOTCH_dgraphInit: linking with both libScotch and 
libPTScotch is not allowed
MPI implementation is not thread-safe:
SCOTCH should be compiled without SCOTCH_PTHREAD

Yet, scotch library is unusable...
Any idea to get free from this problem ? 

I put back the ptscotch_test.cpp for completness.
Please, see previous mails related to this bug for details.

Thank you for your help,

Pierre
-- 
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito
#include 
#include 
#include 
#include 

int main() {
  int provided;
  SCOTCH_Dgraph dgrafdat;

  MPI_Init_thread(0, 0, MPI_THREAD_MULTIPLE, &provided);

  if (SCOTCH_dgraphInit(&dgrafdat, MPI_COMM_WORLD) != 0) {
if (MPI_THREAD_MULTIPLE > provided) {
  std::cout << "MPI implementation is not thread-safe:" << std::endl;
  std::cout << "SCOTCH should be compiled without SCOTCH_PTHREAD"
<< std::endl;
  exit(1);
}
  }
  else {
SCOTCH_dgraphExit(&dgrafdat);
  }

  MPI_Finalize();

  return 0;
}


Bug#619837: ITP: pastix -- Parallel sparse matrix package

2011-03-27 Thread Pierre Saramito
Package: wnpp
Severity: wishlist
Owner: Pierre Saramito 


* Package name: pastix
  Version : 3184
  Upstream Author : Faverge Mathieu , Henon Pascal
, Lacoste Xavier  , Ramet Pierre

* URL : http://pastix.gforge.inria.fr/
* License : CeCILL-C-V2
  Programming Lang: C
  Description : Parallel sparse matrix package

 PaStiX (Parallel Sparse matriX package) is a scientific library that
 provides a high performance parallel solver for very large sparse
 linear systems based on direct and block ILU(k) iterative methods.

-- System Information:
Debian Release: 5.0.8
  APT prefers oldstable
  APT policy: (500, 'oldstable')
Architecture: i386 (i686)



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Bug#607038: rheolef: missing include files

2010-12-14 Thread Pierre Saramito
Hi Miles,

Thank you for your interest to Rheolef !

The rheolef reference manual is sometimes out-of-date: 
please see the rheolef user's manual located, together with many examples,
in the directory :

   rheolef-config --docdir
   rheolef-config --exampledir

Here, please enter in r0.cc (the reference manual will be fixed in
the next release):

   #include "rheolef.h"
   using namespace rheolef;
   using namespace std;
   int main () {
 geo g;
 cin >> g;
 cout << mayavi << full << g;
   }

and then :

   make r0
   mkgeo_grid -t 10 | ./r0

The corresponding Makefile is in attachement (it is also
distributed in the rheolef examples/ directory).

Pierre
-- 
pierre.saram...@imag.fr
Directeur de Recherche CNRS
Laboratoire Jean Kuntzmann, Grenoble, France
http://www-ljk.imag.fr/membres/Pierre.Saramito


On mar 14 d?c 2010 ? 16:17 +0900, Miles Bader wrote :
> Package: rheolef
> Version: 5.91-1
> Severity: normal
> 
> I tried to compile the following example from the rheolef manual:
> 
>#include "rheolef/rheolef.h"
> 
>void main ()
>{
>  geo g;
>  cin >> g;
>  cout << plotmtv << g;
>}
> 
> 
> 
> Using this command:
> 
>g++ -O2 -march=native -o r0 -I/usr/include/rheolef r0.cc
> 
> I get the following error output:
> 
>In file included from /usr/include/rheolef/tiny_matvec.h:30:0,
>   from /usr/include/rheolef/georep.h:29,
>   from /usr/include/rheolef/geo.h:147,
>   from /usr/include/rheolef/rheolef.h:26,
>   from r0.cc:1:
>/usr/include/rheolef/compiler.h:31:62: fatal error: rheolef/config.h: No 
> such file or directory
> 
> ... and indeed, there is no such file (/usr/include/rheolef/config.h).
> 
> [It looks like it may be impossible to compile _any_ programs using
> rheolef, given this situation.]
> 
> Thanks,
> 
> -Miles
include $(shell rheolef-config --libdir)/rheolef/rheolef.mk
CXXFLAGS  = $(INCLUDES_RHEOLEF)
LDLIBS= $(LIBS_RHEOLEF)
default: dirichlet



Bug#599162: installation-reports: /proc/bus/usb/devices file not found

2010-10-05 Thread Pierre Saramito
Package: installation-reports

Abstract: debian-netinst: /proc/bus/usb/devices file not found

Boot method: CD
Image version: 
http://cdimage.debian.org/cdimage/daily-builds/daily/arch-latest/i386/iso-cd/debian-testing-i386-netinst.iso
Date: 2010/09/30 11:20

Machine: PC
Processor: Intel(R) Core(TM)2 Duo CPU E7400  @ 2.80GHz
Memory: 3374552 kB
Partitions: 
Sys. fich.Type1K-blocs   UtiliséDispo. Uti% Monté sur
/dev/sda6 ext314421312   3839772   9848980  29% /
/dev/sda5 ext3   432648560 241736804 168934436  59% /home
tmpfstmpfs 1687276 0   1687276   0% /lib/init/rw
udev tmpfs 1682928   304   1682624   1% /dev
tmpfstmpfs 1687276 0   1687276   0% /dev/shm

Output of lspci -knn (or lspci -nn):
00:00.0 Host bridge [0600]: Intel Corporation 4 Series Chipset DRAM 
Controller [8086:2e20] (rev 03)
Subsystem: ASUSTeK Computer Inc. Device [1043:82d3]
00:01.0 PCI bridge [0604]: Intel Corporation 4 Series Chipset PCI 
Express Root Port [8086:2e21] (rev 03)
Kernel driver in use: pcieport
00:1a.0 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #4 [8086:3a37]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1a.1 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #5 [8086:3a38]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1a.2 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #6 [8086:3a39]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1a.7 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB2 EHCI Controller #2 [8086:3a3c]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: ehci_hcd
00:1b.0 Audio device [0403]: Intel Corporation 82801JI (ICH10 Family) 
HD Audio Controller [8086:3a3e]
Subsystem: ASUSTeK Computer Inc. Device [1043:82fe]
Kernel driver in use: HDA Intel
00:1c.0 PCI bridge [0604]: Intel Corporation 82801JI (ICH10 Family) PCI 
Express Root Port 1 [8086:3a40]
Kernel driver in use: pcieport
00:1c.5 PCI bridge [0604]: Intel Corporation 82801JI (ICH10 Family) PCI 
Express Root Port 6 [8086:3a4a]
Kernel driver in use: pcieport
00:1d.0 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #1 [8086:3a34]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1d.1 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #2 [8086:3a35]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1d.2 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #3 [8086:3a36]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1d.7 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB2 EHCI Controller #1 [8086:3a3a]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: ehci_hcd
00:1e.0 PCI bridge [0604]: Intel Corporation 82801 PCI Bridge 
[8086:244e] (rev 90)
00:1f.0 ISA bridge [0601]: Intel Corporation 82801JIR (ICH10R) LPC 
Interface Controller [8086:3a16]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
00:1f.2 IDE interface [0101]: Intel Corporation 82801JI (ICH10 Family) 
4 port SATA IDE Controller #1 [8086:3a20]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: ata_piix
00:1f.3 SMBus [0c05]: Intel Corporation 82801JI (ICH10 Family) SMBus 
Controller [8086:3a30]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
00:1f.5 IDE interface [0101]: Intel Corporation 82801JI (ICH10 Family) 
2 port SATA IDE Controller #2 [8086:3a26]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: ata_piix
01:00.0 VGA compatible controller [0300]: ATI Technologies Inc RV710 
[Radeon HD 4350] [1002:954f]
Subsystem: PC Partner Limited Device [174b:e990]
Kernel driver in use: radeon
01:00.1 Audio device [0403]: ATI Technologies Inc RV710/730 [1002:aa38]
Subsystem: PC Partner Limited R700 Audio Device [Radeon HD 4000 
Series] [174b:aa38]
Kernel driver in use: HDA Intel
02:00.0 Ethernet controller [0200]: Atheros Communications 
AR8121

Bug#599156: installation-reports: debian-netinst/grub detects others systems but do not insert it in grub.cfg

2010-10-05 Thread Pierre Saramito

Package: installation-reports

Abstract: debian-netinst/grub detects others systems but do not insert it in 
grub.cfg

Boot method: CD
Image version: 
http://cdimage.debian.org/cdimage/daily-builds/daily/arch-latest/i386/iso-cd/debian-testing-i386-netinst.iso
Date: 2010/09/30 11:20

Machine: PC
Processor: Intel(R) Core(TM)2 Duo CPU E7400  @ 2.80GHz
Memory: 3374552 kB
Partitions: 
Sys. fich.Type1K-blocs   UtiliséDispo. Uti% Monté sur
/dev/sda6 ext314421312   3839772   9848980  29% /
/dev/sda5 ext3   432648560 241736804 168934436  59% /home
tmpfstmpfs 1687276 0   1687276   0% /lib/init/rw
udev tmpfs 1682928   304   1682624   1% /dev
tmpfstmpfs 1687276 0   1687276   0% /dev/shm

Output of lspci -knn (or lspci -nn):
00:00.0 Host bridge [0600]: Intel Corporation 4 Series Chipset DRAM 
Controller [8086:2e20] (rev 03)
Subsystem: ASUSTeK Computer Inc. Device [1043:82d3]
00:01.0 PCI bridge [0604]: Intel Corporation 4 Series Chipset PCI 
Express Root Port [8086:2e21] (rev 03)
Kernel driver in use: pcieport
00:1a.0 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #4 [8086:3a37]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1a.1 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #5 [8086:3a38]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1a.2 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #6 [8086:3a39]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1a.7 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB2 EHCI Controller #2 [8086:3a3c]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: ehci_hcd
00:1b.0 Audio device [0403]: Intel Corporation 82801JI (ICH10 Family) 
HD Audio Controller [8086:3a3e]
Subsystem: ASUSTeK Computer Inc. Device [1043:82fe]
Kernel driver in use: HDA Intel
00:1c.0 PCI bridge [0604]: Intel Corporation 82801JI (ICH10 Family) PCI 
Express Root Port 1 [8086:3a40]
Kernel driver in use: pcieport
00:1c.5 PCI bridge [0604]: Intel Corporation 82801JI (ICH10 Family) PCI 
Express Root Port 6 [8086:3a4a]
Kernel driver in use: pcieport
00:1d.0 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #1 [8086:3a34]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1d.1 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #2 [8086:3a35]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1d.2 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #3 [8086:3a36]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1d.7 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB2 EHCI Controller #1 [8086:3a3a]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: ehci_hcd
00:1e.0 PCI bridge [0604]: Intel Corporation 82801 PCI Bridge 
[8086:244e] (rev 90)
00:1f.0 ISA bridge [0601]: Intel Corporation 82801JIR (ICH10R) LPC 
Interface Controller [8086:3a16]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
00:1f.2 IDE interface [0101]: Intel Corporation 82801JI (ICH10 Family) 
4 port SATA IDE Controller #1 [8086:3a20]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: ata_piix
00:1f.3 SMBus [0c05]: Intel Corporation 82801JI (ICH10 Family) SMBus 
Controller [8086:3a30]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
00:1f.5 IDE interface [0101]: Intel Corporation 82801JI (ICH10 Family) 
2 port SATA IDE Controller #2 [8086:3a26]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: ata_piix
01:00.0 VGA compatible controller [0300]: ATI Technologies Inc RV710 
[Radeon HD 4350] [1002:954f]
Subsystem: PC Partner Limited Device [174b:e990]
Kernel driver in use: radeon
01:00.1 Audio device [0403]: ATI Technologies Inc RV710/730 [1002:aa38]
Subsystem: PC Partner Limited R700 Audio Device [Radeon HD 4000 
Series] [174b:aa38]
Kernel driver in use: HDA Intel
02:00.0 Ethernet controller [0200]: Ather

Bug#598653: installation-reports: debian squeeze hang at boot time when starting Xwindow: missing firmware for ati radeon card

2010-09-30 Thread Pierre Saramito
Package: installation-reports

Abstract:   squeeze hang at boot time when starting Xwindow: missing firmware 
for ati radeon card
Suggestion: add a menu that propose to download (non-free) firmwares that are 
required

Boot method: CD
Image version: 
http://cdimage.debian.org/cdimage/daily-builds/daily/arch-latest/i386/iso-cd/debian-testing-i386-netinst.iso
Date: 2010/09/30 11:20

Machine: PC
Processor: Intel(R) Core(TM)2 Duo CPU E7400  @ 2.80GHz
Memory: 3374552 kB
Partitions: 
Sys. fich.Type1K-blocs   UtiliséDispo. Uti% Monté sur
/dev/sda6 ext314421312   3839772   9848980  29% /
/dev/sda5 ext3   432648560 241736804 168934436  59% /home
tmpfstmpfs 1687276 0   1687276   0% /lib/init/rw
udev tmpfs 1682928   304   1682624   1% /dev
tmpfstmpfs 1687276 0   1687276   0% /dev/shm

Output of lspci -knn (or lspci -nn):
00:00.0 Host bridge [0600]: Intel Corporation 4 Series Chipset DRAM 
Controller [8086:2e20] (rev 03)
Subsystem: ASUSTeK Computer Inc. Device [1043:82d3]
00:01.0 PCI bridge [0604]: Intel Corporation 4 Series Chipset PCI 
Express Root Port [8086:2e21] (rev 03)
Kernel driver in use: pcieport
00:1a.0 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #4 [8086:3a37]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1a.1 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #5 [8086:3a38]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1a.2 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #6 [8086:3a39]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1a.7 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB2 EHCI Controller #2 [8086:3a3c]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: ehci_hcd
00:1b.0 Audio device [0403]: Intel Corporation 82801JI (ICH10 Family) 
HD Audio Controller [8086:3a3e]
Subsystem: ASUSTeK Computer Inc. Device [1043:82fe]
Kernel driver in use: HDA Intel
00:1c.0 PCI bridge [0604]: Intel Corporation 82801JI (ICH10 Family) PCI 
Express Root Port 1 [8086:3a40]
Kernel driver in use: pcieport
00:1c.5 PCI bridge [0604]: Intel Corporation 82801JI (ICH10 Family) PCI 
Express Root Port 6 [8086:3a4a]
Kernel driver in use: pcieport
00:1d.0 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #1 [8086:3a34]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1d.1 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #2 [8086:3a35]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1d.2 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB UHCI Controller #3 [8086:3a36]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: uhci_hcd
00:1d.7 USB Controller [0c03]: Intel Corporation 82801JI (ICH10 Family) 
USB2 EHCI Controller #1 [8086:3a3a]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: ehci_hcd
00:1e.0 PCI bridge [0604]: Intel Corporation 82801 PCI Bridge 
[8086:244e] (rev 90)
00:1f.0 ISA bridge [0601]: Intel Corporation 82801JIR (ICH10R) LPC 
Interface Controller [8086:3a16]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
00:1f.2 IDE interface [0101]: Intel Corporation 82801JI (ICH10 Family) 
4 port SATA IDE Controller #1 [8086:3a20]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: ata_piix
00:1f.3 SMBus [0c05]: Intel Corporation 82801JI (ICH10 Family) SMBus 
Controller [8086:3a30]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
00:1f.5 IDE interface [0101]: Intel Corporation 82801JI (ICH10 Family) 
2 port SATA IDE Controller #2 [8086:3a26]
Subsystem: ASUSTeK Computer Inc. Device [1043:82d4]
Kernel driver in use: ata_piix
01:00.0 VGA compatible controller [0300]: ATI Technologies Inc RV710 
[Radeon HD 4350] [1002:954f]
Subsystem: PC Partner Limited Device [174b:e990]
Kernel driver in use: radeon
01:00.1 Audio device [0403]: ATI Technologies Inc RV710/730 [1002:aa38]
Subsystem: PC Partner Limited R700 Audio Device [Radeon HD 4000 
Series] [174b:aa38