Bug#1086956: scipy: how to provide the pooch data's ?

[Picca Frédéric-Emmanuel]

Source: scipy
Severity: normal
X-Debbugs-Cc: pi...@debian.org

Hello,


I am working on package which require the ascent.dat in order to run its test.

/usr/lib/python3/dist-packages/scipy/datasets/_fetchers.py:71: in ascent
fname = fetch_data("ascent.dat")
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

dataset_name = 'ascent.dat', data_fetcher = None

def fetch_data(dataset_name, data_fetcher=data_fetcher):
if data_fetcher is None:
>   raise ImportError("Missing optional dependency 'pooch' required "
  "for scipy.datasets module. Please use pip or "
  "conda to install 'pooch'.")
E   ImportError: Missing optional dependency 'pooch' required for 
scipy.datasets module. Please use pip or conda to install 'pooch'.


So my question is is it possible to provide these dataset in a dedicated 
package in order to be able to run test without network.

thanks

Frédéric


-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 6.11.6-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#1082878: python3-gemmi: Please add the dist-info data's

[Picca Frédéric-Emmanuel]

Package: python3-gemmi
Severity: important
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

While preparing the new version of dials, I discoverd that the gemmi dependency 
was not automatically generated during the packaging process. Indeed, 
python3-gemmi does not provide the necessary dist-info.

Could you be so kind to add these informations in the pacakge.

thanks

Frederic

-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (500, 'testing'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.10.3-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages python3-gemmi depends on:
ii  libc6   2.40-3
ii  libgcc-s1   14.2.0-5
ii  libstdc++6  14.2.0-5
ii  python3 3.12.6-1
ii  zlib1g  1:1.3.dfsg+really1.3.1-1

python3-gemmi recommends no packages.

python3-gemmi suggests no packages.

Bug#1078439: bornagain: error while loading shared libraries: _libBornAgainGUI.so: cannot open shared object file: No such file or directory

[Picca Frédéric-Emmanuel]

Package: bornagain
Version: 22~git20240726093306.cb41cc4+ds3-1
Severity: important
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

While trying to use bornagain, I got this error message

$ bornagain
bornagain: error while loading shared libraries: _libBornAgainGUI.so: cannot 
open shared object file: No such file or directory

something is missing in the pacakge :)

Cheers

Fred


-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (500, 'testing'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.10.3-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages bornagain depends on:
ii  libboost-program-options1.83.0  1.83.0-3.1
ii  libc6   2.39-6
ii  libgcc-s1   14.2.0-1
ii  libqt6core6t64  6.6.2+dfsg-11
ii  libqt6gui6  6.6.2+dfsg-11
ii  libqt6opengl6   6.6.2+dfsg-11
ii  libqt6openglwidgets66.6.2+dfsg-11
ii  libqt6printsupport6 6.6.2+dfsg-11
ii  libqt6widgets6  6.6.2+dfsg-11
ii  libstdc++6  14.2.0-1

Versions of packages bornagain recommends:
ii  python3-bornagain  22~git20240726093306.cb41cc4+ds3-1

bornagain suggests no packages.

-- no debconf information

Bug#1078079: jupyterlab: please add autopkgtest

[Picca Frédéric-Emmanuel]

Source: jupyterlab
Version: 4.0.11+ds1-2
Severity: normal

Dear Maintainer,

It would be great if we could run integration test with autopkgtests.

The upstream run test test using the attached file


-- System Information:
Debian Release: 12.6
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable-security'), (500, 
'proposed-updates'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.1.0-23-amd64 (SMP w/128 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
#!/bin/bash

# Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.

set -ex
set -o pipefail

# use a single global cache dir
export YARN_ENABLE_GLOBAL_CACHE=1

# display verbose output for pkg builds run during `jlpm install`
export YARN_ENABLE_INLINE_BUILDS=1


if [[ $GROUP != nonode ]]; then
python -c "from jupyterlab.commands import build_check; build_check()"
fi


if [[ $GROUP == python ]]; then
export JUPYTERLAB_DIR="${HOME}/share/jupyter/lab/"
mkdir -p $JUPYTERLAB_DIR

# the env var ensures that `yarn.lock` in app dir does not change on a 
simple `jupyter lab build` call
YARN_ENABLE_IMMUTABLE_INSTALLS=1 jupyter lab build --debug --minimize=False

# Run the python tests
python -m pytest
fi


if [[ $GROUP == js* ]]; then

# extract the group name
export PKG="${GROUP#*-}"
pushd packages/${PKG}

jlpm run build:test; true

export FORCE_COLOR=1
CMD="jlpm run test:cov"
$CMD || $CMD || $CMD
jlpm run clean
fi


if [[ $GROUP == docs ]]; then
# Build the docs (includes API docs)
python -m pip install .[docs]
pushd docs
make html
popd
fi


if [[ $GROUP == integrity ]]; then
# Run the integrity script first
jlpm run integrity --force
# Validate the project
jlpm install --immutable  --immutable-cache
jlpm dlx yarn-berry-deduplicate --strategy fewerHighest
# Here we should not be stringent as yarn may clean
# output of `yarn-berry-deduplicate`
jlpm install
if [[ "$(git status --porcelain | wc -l | sed -e "s/^[[:space:]]*//" -e 
"s/[[:space:]]*$//")" != "0" ]]; then
git diff
exit 1
fi
# Run a browser check in dev mode
jlpm run build
python -m jupyterlab.browser_check --dev-mode
fi


if [[ $GROUP == lint ]]; then
# Lint our files.
jlpm run prettier:check || (echo 'Please run `jlpm run prettier` locally 
and push changes' && exit 1)
jlpm run eslint:check || (echo 'Please run `jlpm run eslint` locally and 
push changes' && exit 1)
jlpm run eslint:check:typed || (echo echo 'Please run `jlpm run 
eslint:typed` locally and push changes' && exit 1)
jlpm run stylelint:check || (echo 'Please run `jlpm run stylelint` locally 
and push changes' && exit 1)

# Python checks
ruff format .
ruff .
pipx run 'validate-pyproject[all]' pyproject.toml
fi


if [[ $GROUP == integrity2 ]]; then
# Run the integrity script to link binary files
jlpm integrity

# Build the packages individually.
jlpm run build:src

# Make sure we can build for release
jlpm run build:dev:prod:release

# Make sure we have CSS that can be converted with postcss
jlpm dlx -p postcss -p postcss-cli postcss packages/**/style/*.css --dir 
/tmp --config scripts/postcss.config.js

# run twine check on the python build assets.
# this must be done before altering any versions below.
python -m pip install -U twine wheel build
python -m build .
twine check dist/*

fi


if [[ $GROUP == integrity3 ]]; then
# Make sure we can bump the version
# This must be done at the end so as not to interfere
# with the other checks
git config --global user.email "y...@example.com"
git config --global user.name "CI"
git stash
git checkout -b commit_${BUILD_SOURCEVERSION}
git clean -df
jlpm bumpversion minor --force
jlpm bumpversion major --force
jlpm bumpversion release --force # switch to beta
jlpm bumpversion release --force # switch to rc
jlpm bumpversion build --force
jlpm bumpversion next --force
VERSION=$(hatch version)
if [[ $VERSION != *rc2 ]]; then exit 1; fi

# make sure we can patch release
jlpm bumpversion release --force  # switch to final
jlpm bumpversion patch --force
jlpm bumpversion next --force

# make sure we can bump major JS releases
jlpm bumpversion minor --force
jlpm bump:js:major console --force
jlpm bump:js:major console notebook --force

# Make sure that a prepublish would include the proper files.
jlpm run prepublish:check
fi


if [[ $GROUP == release_test ]]; then
# bump the version
git checkout -b test HEAD
jlpm bumpversion next --force

  

Bug#1078077: jupyterlab: Fail to get yarn configuration. node:internal/modules/cjs/loader:1148

[Picca Frédéric-Emmanuel]

Source: jupyterlab
Version: 4.0.11+ds1-2
Severity: normal

Dear Maintainer,

when I start jupyter-lab, I get there errors

$ jupyter lab
Fail to get yarn configuration. node:internal/modules/cjs/loader:1148
  throw err;
  ^

Error: Cannot find module '/usr/share/nodejs/corepack/dist/yarn.js'
at Module._resolveFilename (node:internal/modules/cjs/loader:1145:15)
at Module._load (node:internal/modules/cjs/loader:986:27)
at Function.executeUserEntryPoint [as runMain] 
(node:internal/modules/run_main:174:12)
at node:internal/main/run_main_module:28:49 {
  code: 'MODULE_NOT_FOUND',
  requireStack: []
}

Node.js v20.15.1

[I 2024-08-06 18:03:27.952 ServerApp] jupyterlab | extension was successfully 
linked.
[I 2024-08-06 18:03:27.955 ServerApp] Writing Jupyter server cookie secret to 
/home/picca/.local/share/jupyter/runtime/jupyter_cookie_secret
[I 2024-08-06 18:03:28.342 ServerApp] notebook_shim | extension was 
successfully linked.
[I 2024-08-06 18:03:28.365 ServerApp] notebook_shim | extension was 
successfully loaded.
[I 2024-08-06 18:03:28.366 LabApp] JupyterLab extension loaded from 
/usr/lib/python3/dist-packages/jupyterlab
[I 2024-08-06 18:03:28.366 LabApp] JupyterLab application directory is 
/usr/share/jupyter/lab
[I 2024-08-06 18:03:28.366 LabApp] Extension Manager is 'pypi'.
[I 2024-08-06 18:03:28.368 ServerApp] jupyterlab | extension was successfully 
loaded.
[I 2024-08-06 18:03:28.368 ServerApp] Serving notebooks from local directory: 
/home/picca
[I 2024-08-06 18:03:28.368 ServerApp] Jupyter Server 1.23.3 is running at:
[I 2024-08-06 18:03:28.368 ServerApp] 
http://localhost:/lab?token=8c9a8a3cfda4630538049f8ead6237b52fa82b9b56079ca2
[I 2024-08-06 18:03:28.368 ServerApp]  or 
http://127.0.0.1:/lab?token=8c9a8a3cfda4630538049f8ead6237b52fa82b9b56079ca2
[I 2024-08-06 18:03:28.368 ServerApp] Use Control-C to stop this server and 
shut down all kernels (twice to skip confirmation).
[C 2024-08-06 18:03:28.408 ServerApp] 

To access the server, open this file in a browser:

file:///home/picca/.local/share/jupyter/runtime/jpserver-201873-open.html
Or copy and paste one of these URLs:

http://localhost:/lab?token=8c9a8a3cfda4630538049f8ead6237b52fa82b9b56079ca2
 or 
http://127.0.0.1:/lab?token=8c9a8a3cfda4630538049f8ead6237b52fa82b9b56079ca2
[E 2024-08-06 18:03:31.929 ServerApp] Could not open static file ''
[W 2024-08-06 18:03:31.930 ServerApp] 404 GET /api/me?1722960211804 (::1) 
12.77ms referer=http://localhost:/lab
[W 2024-08-06 18:03:31.933 ServerApp] 404 GET 
/api/events/subscribe?token=8c9a8a3cfda4630538049f8ead6237b52fa82b9b56079ca2 
(::1) 14.84ms referer=None
[W 2024-08-06 18:03:32.184 ServerApp] 404 GET 
/api/events/subscribe?token=8c9a8a3cfda4630538049f8ead6237b52fa82b9b56079ca2 
(::1) 0.92ms referer=None
[W 2024-08-06 18:03:33.322 ServerApp] 404 GET /lsp/status?1722960213320 (::1) 
1.03ms referer=http://localhost:/lab
[W 2024-08-06 18:03:33.450 ServerApp] 404 GET 
/api/events/subscribe?token=8c9a8a3cfda4630538049f8ead6237b52fa82b9b56079ca2 
(::1) 2.28ms referer=None
[E 2024-08-06 18:03:33.498 LabApp] Fail to get yarn configuration. 
node:internal/modules/cjs/loader:1148
  throw err;
  ^

Error: Cannot find module '/usr/share/nodejs/corepack/dist/yarn.js'
at Module._resolveFilename (node:internal/modules/cjs/loader:1145:15)
at Module._load (node:internal/modules/cjs/loader:986:27)
at Function.executeUserEntryPoint [as runMain] 
(node:internal/modules/run_main:174:12)
at node:internal/main/run_main_module:28:49 {
  code: 'MODULE_NOT_FOUND',
  requireStack: []
}

Node.js v20.15.1

[I 2024-08-06 18:03:33.499 LabApp] Build is up to date
[W 2024-08-06 18:03:36.286 ServerApp] 404 GET 
/api/events/subscribe?token=8c9a8a3cfda4630538049f8ead6237b52fa82b9b56079ca2 
(::1) 2.24ms referer=None
[W 2024-08-06 18:03:39.739 ServerApp] 404 GET 
/api/events/subscribe?token=8c9a8a3cfda4630538049f8ead6237b52fa82b9b56079ca2 
(::1) 1.68ms referer=None



-- System Information:
Debian Release: 12.6
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable-security'), (500, 
'proposed-updates'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.1.0-23-amd64 (SMP w/128 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#1077844: pkg-perl-tools: Last upload seems to be wrong

[Picca Frédéric-Emmanuel]

Package: pkg-perl-tools
Version: 0.79
Severity: normal
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

When preparing one of my package, I did

orange-canvas-core$ dpt prepare

gbp pull

gbp:info: Fetching from default remote for each branch
gbp:info: Branch 'upstream' is already up to date.
gbp:info: Branch 'pristine-tar' is already up to date.
gbp:info: Branch 'master' is already up to date.

Bugs

None \o/

rmadison

orange-canvas-core | 0.1.31-3  | testing | source
orange-canvas-core | 0.2.1-3   | buildd-unstable | source
orange-canvas-core | 0.2.1-3   | unstable| source

grep-excuses

Excuse for orange-canvas-core

  • Migration status for orange-canvas-core (0.1.31-3 to 0.2.1-2): BLOCKED: 
Maybe temporary, maybe blocked but Britney is missing information (check below)
  • Issues preventing migration:
  □ Not built on buildd: upload info for arch all binaries not found, a new 
source-only upload is needed to allow migration
  □ Too young, only 1 of 2 days old
  □ Build-Depends(-Arch): orange-canvas-core python-requests-cache (not 
considered)
  □ Depends: orange-canvas-core python-requests-cache (not considered)
  • Additional info:
  □ Piuparts tested OK - 
https://piuparts.debian.org/sid/source/o/orange-canvas-core.html
  □ autopkgtest for orange-canvas-core/0.2.1-2: amd64: Pass, arm64: Pass, 
armel: Pass, armhf: Pass, i386: Pass, ppc64el: Pass, riscv64: Pass, s390x: Pass
  □ Waiting for reproducibility test results on amd64 - info ♻
  □ Waiting for reproducibility test results on arm64 - info ♻
  □ Waiting for reproducibility test results on armhf - info ♻
  □ Reproducible on i386 - info ♻
  □ Required age reduced by 3 days because of autopkgtest
  • Depends: orange-canvas-core python-requests-cache

Excuses generated on: Sat Aug 3 08:05:46 2024 UTC

Last upload
===
Uploads for orange-canvas-core:
0.1.31-3 to unstable: Roland Mas  on Tue, 15 Aug 2023 
13:20:27 +

Popcon
==

Key package?

✘ orange-canvas-core is no key package

CI (amd64)
==
  suite   |date | version  | status
--+-+--+
 testing  | 2024-08-01 10:56:59 | 0.1.31-3 |   ✔
 unstable | 2024-07-28 12:33:29 | 0.1.31-3 |   ✔

New upstream release?
=
None \o/

Git diff against last Debian tag

None \o/

the version in unstable is 0.2.1-3 but the last reported version is 0.1.31-3 
whcih is the testing verion.

I think that this is wrong.

Cheers

Fred


*** Reporter, please consider answering these questions, where appropriate ***

   * What led up to the situation?
   * What exactly did you do (or not do) that was effective (or
 ineffective)?
   * What was the outcome of this action?
   * What outcome did you expect instead?

*** End of the template - remove these template lines ***


-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (500, 'testing'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.8.12-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages pkg-perl-tools depends on:
ii  curl 8.9.1-1
ii  debhelper13.16
ii  devscripts   2.23.7
ii  dh-make-perl 0.125
ii  git  1:2.45.2-1
ii  git-buildpackage 0.9.34
ii  libdatetime-perl 2:1.65-1+b1
ii  libdebian-source-perl0.125
ii  libdpkg-perl 1.22.11
ii  libgit-repository-perl   1.325-3
ii  libgitlab-api-v4-perl0.27-1
ii  libipc-run-perl  20231003.0-2
ii  libjson-xs-perl  4.030-2+b3
ii  libpath-tiny-perl0.146-1
ii  libproc-invokeeditor-perl1.13-3
ii  librt-client-rest-perl   1:0.72-1
ii  libtry-tiny-perl 0.31-2
ii  libutf8-all-perl 0.024-3
ii  lintian  2.118.0
ii  openssh-client [ssh-client]  1:9.8p1-1
ii  perl 5.38.2-5
ii  pristine-tar 1.50+nmu2
ii  quilt0.68-1

Versions of packages pkg-perl-tools recommends:
ii  autodep8  0.28+nmu1
ii  autopkgtest   5.37
ii  cme   1.040-1
ii  libarray-utils-perl   0.5-3
ii  libconfig-model-dpkg-perl 3.005
ii  libconfig-model-perl  2.154-1
ii  libdebian-copyright-perl  0.2-6
ii  libfile-slurp-perl.32-2
ii  libmime-lite-perl 3.033-2
ii  libmodule-inspector-perl  1.05-3
ii  libnet-github-perl1.05

Bug#1077205: cython: generated code does not compile with gcc-14

[Picca Frédéric-Emmanuel]

Source: cython
Version: 3.0.10+dfsg-5
Severity: important
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

while working on the pyfai packages, I got an FTBFS due to gcc-14.

like this

[34/91] cc -Isrc/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p 
-Isrc/pyFAI/ext -I../src/pyFAI/ext -I/usr/include/python3.12 
-fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -O3 -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/<>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_src_pyFAI_ext_sparse_utils.pyx.c.o
 -MF 
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_src_pyFAI_ext_sparse_utils.pyx.c.o.d
 -o 
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_src_pyFAI_ext_sparse_utils.pyx.c.o
 -c 
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/src/pyFAI/ext/sparse_utils.pyx.c
FAILED: 
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_src_pyFAI_ext_sparse_utils.pyx.c.o
cc -Isrc/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p 
-Isrc/pyFAI/ext -I../src/pyFAI/ext -I/usr/include/python3.12 
-fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 
-Wall -Winvalid-pch -O3 -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/<>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_src_pyFAI_ext_sparse_utils.pyx.c.o
 -MF 
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_src_pyFAI_ext_sparse_utils.pyx.c.o.d
 -o 
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/meson-generated_src_pyFAI_ext_sparse_utils.pyx.c.o
 -c 
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/src/pyFAI/ext/sparse_utils.pyx.c
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/src/pyFAI/ext/sparse_utils.pyx.c:
 In function ‘__pyx_pf_5pyFAI_3ext_12sparse_utils_12ArrayBuilder___cinit__’:
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/src/pyFAI/ext/sparse_utils.pyx.c:45695:17:
 error: assignment to ‘struct __pyx_obj_5pyFAI_3ext_12sparse_utils_Vector *’ 
from incompatible pointer type ‘PyObject *’ {aka ‘struct _object *’} 
[-Wincompatible-pointer-types]
45695 | *__pyx_t_10 = __pyx_t_1;
  | ^
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/src/pyFAI/ext/sparse_utils.pyx.c:
 In function ‘__pyx_pf_5pyFAI_3ext_12sparse_utils_12ArrayBuilder_2__dealloc__’:
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/src/pyFAI/ext/sparse_utils.pyx.c:45783:16:
 error: assignment to ‘struct __pyx_obj_5pyFAI_3ext_12sparse_utils_Vector *’ 
from incompatible pointer type ‘PyObject *’ {aka ‘struct _object *’} 
[-Wincompatible-pointer-types]
45783 | *__pyx_t_5 = Py_None;
  |^
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/src/pyFAI/ext/sparse_utils.pyx.c:
 At top level:
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/src/pyFAI/ext/sparse_utils.pyx.c:61594:12:
 warning: ‘__pyx_memview_set_object’ defined but not used [-Wunused-function]
61594 | static int __pyx_memview_set_object(const char *itemp, PyObject *obj) {
  |^~~~
src/pyFAI/ext/sparse_utils.cpython-312-x86_64-linux-gnu.so.p/src/pyFAI/ext/sparse_utils.pyx.c:61589:20:
 warning: ‘__pyx_memview_get_object’ defined but not used [-Wunused-function]
61589 |   static PyObject *__pyx_memview_get_object(const char *itemp) {
  |^~~~


It seems that gcc-14 considere that incompatible-pointer-types is now an error.

The workaround proposed by cython is for now to  retrograde the erroor int a 
warning with this flag


This is now an error in GCC 14: gcc-mirror/gcc@9715c54 .

A temporary workaround is to set CFLAGS="${CFLAGS} 
-Wno-error=incompatible-pointer-types".

https://github.com/cython/cython/issues/5240

since febuary 2024...

Cheers

Frederic


-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (500, 'testing'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.8.12-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#1074472: sqlalchemy.exc.ArgumentError: expected schema argument to be a string

[Picca Frédéric-Emmanuel]

Package: gourmand
Version: 1.1.0+really1.1.0~rc3-4
Severity: important
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

While trying the applciation I got this instead of a working application

$ gourmand
args = Namespace(db_url='', threads=False, gourmanddir='', 
thread_debug_interval=5.0, thread_debug=False, debug_file='', time=False, 
debug=None)
Plugin  html_plugin not found
Plugin  archive_plugin not found
Plugin  web_import_plugin not found
Plugin  website_import_plugins not found
Plugin  copy_paste_plugin not found
Traceback (most recent call last):
  File "/usr/bin/gourmand", line 33, in 
sys.exit(load_entry_point('gourmand==1.0.0', 'gui_scripts', 'gourmand')())
 
  File "/usr/lib/python3/dist-packages/gourmand/main.py", line 624, in 
launch_app
RecGui.instance()
  File "/usr/lib/python3/dist-packages/gourmand/main.py", line 848, in instance
RecGui.__single = cls()
  ^
  File "/usr/lib/python3/dist-packages/gourmand/main.py", line 857, in __init__
GourmandApplication.__init__(self)
  File "/usr/lib/python3/dist-packages/gourmand/main.py", line 72, in __init__
self.setup_recipes() # Setup recipe database

  File "/usr/lib/python3/dist-packages/gourmand/main.py", line 149, in 
setup_recipes
self.rd = recipeManager.default_rec_manager()
  ^^^
  File "/usr/lib/python3/dist-packages/gourmand/recipeManager.py", line 82, in 
default_rec_manager
return get_recipe_manager(**dbargs)
   
  File "/usr/lib/python3/dist-packages/gourmand/recipeManager.py", line 79, in 
get_recipe_manager
return RecipeManager.instance_for(**kwargs)
   
  File "/usr/lib/python3/dist-packages/gourmand/backends/db.py", line 1833, in 
instance_for
cls._instance_by_db_url[url] = cls(file, custom_url)
   ^
  File "/usr/lib/python3/dist-packages/gourmand/backends/db.py", line 1839, in 
__init__
self.rd = get_database(*args, **kwargs)
  ^
  File "/usr/lib/python3/dist-packages/gourmand/backends/db.py", line 2110, in 
get_database
return RecData.instance_for(*args, **kwargs)
   ^
  File "/usr/lib/python3/dist-packages/gourmand/backends/db.py", line 156, in 
instance_for
cls._instance_by_db_url[url] = cls(file, url)
   ^^
  File "/usr/lib/python3/dist-packages/gourmand/backends/db.py", line 175, in 
__init__
self.initialize_connection()
  File "/usr/lib/python3/dist-packages/gourmand/backends/db.py", line 216, in 
initialize_connection
self.metadata = sqlalchemy.MetaData(self.db)

  File "/usr/lib/python3/dist-packages/sqlalchemy/sql/schema.py", line 5470, in 
__init__
raise exc.ArgumentError(
sqlalchemy.exc.ArgumentError: expected schema argument to be a string, got 
.


Cheers

Frederic

-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (500, 'testing'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.8.12-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages gourmand depends on:
ii  gir1.2-gtk-3.0   3.24.42-1
ii  python3  3.11.8-1
ii  python3-argcomplete  3.4.0-1
ii  python3-bs4  4.12.3-1
ii  python3-gi   3.48.2-1
ii  python3-gi-cairo 3.48.2-1
ii  python3-gst-1.0  1.24.5-1+b1
ii  python3-keyring  25.2.1-1
ii  python3-lxml 5.2.1-1
ii  python3-pil  10.3.0-2
ii  python3-recipe-scrapers  14.56.0-1
ii  python3-reportlab4.2.2-1
ii  python3-requests 2.32.3+dfsg-1
ii  python3-sqlalchemy   2.0.30+ds1-3
ii  python3-toml 0.10.2-1

Versions of packages gourmand recommends:
ii  gir1.2-poppler-0.1824.02.0-5+b1
ii  python3-ebooklib   0.18-2
ii  python3-gtkspellcheck  5.0.3-1
ii  python3-pyglet 2.0.15+ds-1

gourmand suggests no packages.

-- no debconf information

Bug#1072576: coot: save its states in HOME.

[Picca Frédéric-Emmanuel]

Package: coot
Version: 1.1.08+dfsg-3
Severity: normal
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

While using coot I found that it save it's states in these files

DEBUG:: saving state to filename 0-coot.state.py
State file 0-coot.state.py written.
State file 0-coot-history.py written.
State file 0-coot-history.scm written.


Maybe this is just something linked to a DEBUG mode  It would be
great if this state could be saved in the xdg cache directory, or
maybe create a Release coot without all the Debuging.

I do not know what is the best solution...

The coot command line is quite verbose...


I am wondering if these warnings are important ?

Cheers

Frederic


:~$ coot
INFO:: built with GTK 4.12.5
pdd /usr/share/coot
WARNING:: Coot REFMAC dictionary override COOT_REFMAC_LIB_DIR 
/usr/share/coot/lib failed to find the monomer library
WARNING:: COOT_PREFIX set, but no dictionary lib found
WARNING: Failed to read restraints dictionary.
debug:: in setup_python()pydirectory is /usr/lib/python3.11/site-packages
debug:: in setup_python() pkgpydirectory is 
/usr/lib/python3.11/site-packages/coot
WARNING:: The reference structures directory (COOT_REF_STRUCTS): 
/usr/share/coot/reference-structures was not found.
  Ca->Mainchain will not be possible.
WARNING:: Coot REFMAC dictionary override COOT_REFMAC_LIB_DIR 
/usr/share/coot/lib failed to find the monomer library
WARNING:: COOT_PREFIX set, but no dictionary lib found
WARNING: Failed to read restraints dictionary.
INFO:: GL Version:  4.2 (Core Profile) Mesa 24.1.0-2
INFO:: GL Shading Language Version: 4.20
INFO:: GL Renderer: Mesa Intel(R) HD Graphics 2500 (IVB GT1)
INFO:: GL Vendor:   Intel
Shader compile meshes-with-shadows.shader success
Shader compile   meshes-for-shadow-map.shader success
Shader compile instanced-meshes-for-shadow-map.shader success
Shader compile meshes-for-ssao.shader success
Shader compile   instanced-meshes-for-ssao.shader success
Shader compile texture-meshes-for-ssao.shader success
Shader compile texture-meshes-with-shadows.shader success
Shader compile   texture-meshes-shadow-map.shader success
Shader compile  texture-meshes.shader success
Shader compileshadow-map-image-texture.shader success
Shader compile 9.ssao_geometry.shader success
Shader compile  9.ssao.shader success
Shader compile 9.ssao_blur.shader success
Shader compile instanced-meshes-with-shadows.shader success
Shader compile   outline-of-active-residue.shader success
Shader compile map.shader success
Shader compiledraw-map-cap.shader success
Shader compile   model.shader success
Shader compilecentral-cube.shader success
Shader compilecentral-cube.shader success
Shader compilehud-text.shader success
Shader compilehud-bars.shader success
Shader compile  hud-labels.shader success
Shader compile   hud-image-texture.shader success
Shader compile  atom-label.shader success
Shader compilemoleculestotriangles.shader success
Shader compile   lines.shader success
Shader compile lines-pulse.shader success
Shader compile  rama-balls.shader success
Shader compile   particles.shader success
Shader compile   instanced-objects.shader success
Shader compile   extra-distance-restraints.shader success
Shader compile   hud-geometry-tooltip-text.shader success
Shader compile residue-markers.shader success
Shader compileresidue-markers-for-ssao.shader success
Shader compile ligand-view.shader success
Shader compile   model-as-mesh.shader success
Shader compilesymmetry-atoms-lines.shader success
Shader compilehud-bars.shader success
Shader compilerama-plot-axes-and-ticks.shader success
Shader compile   rama-plot-phi-psi-markers.shader success
Shader compile   hud-lines.shader success
Shader compilebackground-image.shader success
Shader compile  meshes.shader success
Shader compile  texture-meshes.shader success
Shader compile effects.shader success
Shader compile  blur-x.shader success
Shader compile  blur-y.shader success
Shader compile  depth-of-field.shader success
Shader compile rotation-centre-cross-hairs-for-ssao.shader success
GL ERROR:: attach_buffers() --- post gtk_gl_area_attach_buffers()  with gl_area 
0x55c678c94a80 calling function: new_startup_realize()

** (Coot:16753): WARNING **: 17:25:52.581: 
set_vertical_toolbar_internal_alignment: Toolbar item 0x55c6769bc670 of type 
GtkToggleButton: The parent widget that wraps GtkToggleButton::child is not a 
GtkBox but a

Bug#1072285: RM: pytango [s390x] -- ROM; Allow migration to testing even during temporary removal of s390x support

[Picca Frédéric-Emmanuel]

Package: ftp.debian.org
Severity: normal
X-Debbugs-Cc: pyta...@packages.debian.org, pi...@debian.org
Control: affects -1 + src:pytango
User: ftp.debian@packages.debian.org
Usertags: remove

pytango's migration to testing is blocked by the lack of an s390x
build; this lack is due to the build being temporarily disabled until
upstream fixes the problems with that architecture. I therefore
request removal of the s390x binary from unstable until the situation
is resolved.

thanks

Frederic

Bug#1072115: ERROR:: Failure to read or parse /usr/share/coot/ui/coot-gtk4.ui

[Picca Frédéric-Emmanuel]

Package: coot
Version: 1.1.08+dfsg-2
Severity: important
X-Debbugs-Cc: pi...@debian.org


while trying to start coot, I get this error message.

$ coot
INFO:: built with GTK 4.12.5
pdd /usr/share/coot
WARNING:: Coot REFMAC dictionary override COOT_REFMAC_LIB_DIR 
/usr/share/coot/lib failed to find the monomer library 
WARNING:: COOT_PREFIX set, but no dictionary lib found
WARNING: Failed to read restraints dictionary. 
ERROR:: Failure to read or parse /usr/share/coot/ui/coot-gtk4.ui
No function named `on_active_map_ok_button_clicked`.


It would be great if you could add an autopkgtest with timetout in order to 
check if the coot GUI could start

something like

#!/bin/sh -ex

# display glxinfo

glxinfo

# Check that the GUI can be started

timeout --preserve-status 10s coot
ec=$?

# do not fail if the exit code is 143, it seems that there is an
# issue with mesa 16/04/2024. (I do not know if this is still required)

if [ $ec -eq 143 ]; then
exit 0;
else
exit $ec;
fi


Cheers

https://salsa.debian.org/science-team/silx/-/blob/master/debian/tests/gui?ref_type=heads


-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 6.8.9-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages coot depends on:
ii  coot-data  1.1.08+dfsg-2
ii  gir1.2-gtk-4.0 4.12.5+ds-6+b1
ii  libasound2t64  1.2.11-1+b1
ii  libatlas3-base [libblas.so.3]  3.10.3-14
ii  libblas3 [libblas.so.3]3.12.0-3
ii  libboost-python1.83.0 [libboost-python1.83.0-py31  1.83.0-3
1]
ii  libc6  2.38-11
ii  libcairo2  1.18.0-3+b1
ii  libclipper22.1.20201109-2+b1
ii  libcootapi1.1  1.1.08+dfsg-2
ii  libcurl3t64-gnutls 8.8.0-1
ii  libepoxy0  1.5.10-1+b2
ii  libfreetype6   2.13.2+dfsg-1+b4
ii  libgcc-s1  14.1.0-1
ii  libgdk-pixbuf-2.0-02.42.12+dfsg-1
ii  libglib2.0-0t642.80.2-2
ii  libgomp1   14.1.0-1
ii  libgraphene-1.0-0  1.10.8-3+b1
ii  libgsl27   2.7.1+dfsg-6+b1
ii  libgtk-4-1 4.12.5+ds-6+b1
ii  libmmdb2-0 2.0.22-1+b1
ii  libopenblas0-pthread [libblas.so.3]0.3.27+ds-2
ii  libpango-1.0-0 1.52.2+ds-1
ii  libpangocairo-1.0-01.52.2+ds-1
ii  libpng16-16t64 1.6.43-5
ii  libpython3.11t64   3.11.9-1
ii  librdkit1  202309.3-3+b1
ii  libsqlite3-0   3.45.3-1
ii  libssm21.4.0-2+b1
ii  libstdc++6 14.1.0-1
ii  libvorbisfile3 1.3.7-2
ii  python33.11.8-1
ii  python3-gi 3.48.2-1
ii  python3-rdkit  202309.3-3+b1
ii  refmac-dictionary  5.41-2
ii  zlib1g 1:1.3.dfsg+really1.3.1-1

coot recommends no packages.

Versions of packages coot suggests:
pn  coot-doc  

-- no debconf information

Bug#1069144: silx: [armel] autopkgtest opencl failure

[Picca Frédéric-Emmanuel]

Package: silx
Version: 2.0.1+dfsg-1
Severity: normal
X-Debbugs-Cc: pi...@debian.org

Hello, the armel autopkgtest fail with this error message

1016s autopkgtest [22:49:50]: test opencl: [---
1017s pocl warning: encountered incomplete implementation in 
./lib/CL/clGetDeviceInfo.c:98
1017s Number of platforms   1
1017s   Platform Name   Portable Computing 
Language
1017s   Platform Vendor The pocl project
1017s   Platform VersionOpenCL 3.0 PoCL 
5.0+debian  Linux, None+Asserts, RELOC, SPIR, LLVM 16.0.6, SLEEF, POCL_DEBUG
1017s   Platform ProfileFULL_PROFILE
1017s   Platform Extensions cl_khr_icd 
cl_pocl_content_size
1017s   Platform Extensions with Versioncl_khr_icd  
 0x40 (1.0.0)
1017s   cl_pocl_content_size
 0x40 (1.0.0)
1017s   Platform Numeric Version0xc0 (3.0.0)
1017s   Platform Extensions function suffix POCL
1017s   Platform Host timer resolution  0ns
1017s 
1017s   Platform Name   Portable Computing 
Language
1017s Number of devices 1
1017s   Device Name cpu-arm946e-s-0xd0c
1017s   Device Vendor   ARM
1017s   Device Vendor ID0x13b5
1017s   Device Version  OpenCL 3.0 PoCL HSTR: 
cpu-armv7-unknown-linux-gnueabi-arm946e-s
1017s   Device Numeric Version  0xc0 (3.0.0)
1017s   Driver Version  5.0+debian
1017s   Device OpenCL C Version OpenCL C 1.2 PoCL
1017s   Device OpenCL C all versionsOpenCL C
 0x40 (1.0.0)
1017s   OpenCL C
 0x401000 (1.1.0)
1017s   OpenCL C
 0x402000 (1.2.0)
1017s   OpenCL C
 0xc0 (3.0.0)
1017s   Device OpenCL C features
__opencl_c_3d_image_writes   0xc0 
(3.0.0)
1017s   __opencl_c_images   
 0xc0 (3.0.0)
1017s   
__opencl_c_atomic_order_acq_rel  0xc0 
(3.0.0)
1017s   
__opencl_c_atomic_order_seq_cst  0xc0 
(3.0.0)
1017s   
__opencl_c_atomic_scope_device   0xc0 
(3.0.0)
1017s   
__opencl_c_program_scope_global_variables0xc0 
(3.0.0)
1017s   
__opencl_c_generic_address_space 0xc0 
(3.0.0)
1017s   __opencl_c_subgroups
 0xc0 (3.0.0)
1017s   
__opencl_c_atomic_scope_all_devices  0xc0 
(3.0.0)
1017s   
__opencl_c_read_write_images 0xc0 
(3.0.0)
1017s   __opencl_c_fp16 
 0xc0 (3.0.0)
1017s   __opencl_c_fp64 
 0xc0 (3.0.0)
1017s   
__opencl_c_ext_fp32_global_atomic_add0xc0 
(3.0.0)
1017s   
__opencl_c_ext_fp32_local_atomic_add 0xc0 
(3.0.0)
1017s   
__opencl_c_ext_fp32_global_atomic_min_max0xc0 
(3.0.0)
1019s   
__opencl_c_ext_fp32_local_atomic_min_max 0xc0 
(3.0.0)
1019s   
__opencl_c_ext_fp64_global_atomic_add0xc0 
(3.0.0)
1019s   
__opencl_c_ext_fp64_local_

Bug#1065481: ITP: pynx -- Python tools for Nano-structures Crystallography

[Picca Frédéric-Emmanuel]

Package: wnpp
Severity: wishlist
Owner: Picca Frédéric-Emmanuel 
X-Debbugs-Cc: debian-de...@lists.debian.org, 
debian-pan-maintain...@alioth-lists.debian.net, pi...@debian.org

* Package name: pynx
  Version : 2023.1.2-1
  Upstream Contact: fa...@esrf.fr
* URL : https://gitlab.esrf.fr/favre/PyNX
* License : CeCILL-B
  Programming Lang: (OpenCL, Python)
  Description : Python tools for Nano-structures Crystallography

 PyNX stands for *Python tools for Nano-structures Crystallography*.
 It is a python library with the following main modules:
 .
 1) pynx.scattering: *X-ray scattering computing using graphical
 processing units*, allowing up to 2.5x10^11 reflections/atoms/seconds
 (single nVidia Titan X). The sub-module``pynx.scattering.gid`` can be
 used for *Grazing Incidence Diffraction* calculations, using the
 Distorted Wave Born Approximation
 .
 2) pynx.ptycho : simulation and analysis of experiments using the
 *ptychography* technique, using either CPU (deprecated) or GPU using
 OpenCL.  Examples are available in the pynx/Examples
 directory. Scripts for analysis of raw data from beamlines are also
 available, as well as using or producing ptychography data sets in
 CXI (Coherent X-ray Imaging) format.
 .
 3) pynx.wavefront: *X-ray wavefront propagation* in the near, far
 field, or continuous (examples available at the end of
 ``wavefront.py``).  Also provided are sub-modules for Fresnel
 propagation and simulation of the illumination from a Fresnel Zone
 Plate, both using OpenCL for high performance computing.
 .
 4) pynx.cdi: *Coherent Diffraction Imaging* reconstruction algorithms
 using GPU.
 .
 In addition, it includes :doc:`scripts ` for
 command-line processing of ptychography data from generic CXI data
 (pynx-ptycho-cxi) or specific to beamlines (pynx-ptycho-id01,
 pynx-ptycho-id13,...).

This package will be naintain in the Debian-Science repository by the
Debian-PAN team

Bug#1063326: TypeError: first argument must be callable

[Picca Frédéric-Emmanuel]

Package: python3-sphinx
Version: 5.3.0-4
Severity: important

Dear Maintainer,

Hello,, while preparing the new silx package, I got this error message from 
sphinx when calling this command line

# build man pages
pybuild --build -s custom -p $(PY3VER) --build-args="cd doc && env 
PYTHONPATH={build_dir} http_proxy='127.0.0.1:9' xvfb-run -a 
--server-args=\"-screen 0 1024x768x24\" {interpreter} -m sphinx -N -bman source 
build/man"

The error message is:

# Platform: linux; (Linux-6.6.13-amd64-x86_64-with-glibc2.37)
# Sphinx version:   7.2.6
# Python version:   3.11.7 (CPython)
# Docutils version: 0.20.1
# Jinja2 version:   3.1.2
# Pygments version: 2.17.2

# Last messages:
#   modules/utils/index
#   modules/utils/array_like
#   modules/utils/decorators
#   modules/utils/testutils
#   modules/utils/weakref
#   modules/utils/retry
#   modules/test/index
#   changelog
#   }
#   failed

# Loaded extensions:
#   sphinx.ext.mathjax (7.2.6)
#   alabaster (0.7.12)
#   sphinx.ext.autodoc.preserve_defaults (7.2.6)
#   sphinx.ext.autodoc.type_comment (7.2.6)
#   sphinx.ext.autodoc.typehints (7.2.6)
#   sphinx.ext.autodoc (7.2.6)
#   sphinx.ext.coverage (7.2.6)
#   sphinx.ext.viewcode (7.2.6)
#   sphinx.ext.doctest (7.2.6)
#   sphinx.ext.graphviz (7.2.6)
#   sphinx.ext.inheritance_diagram (7.2.6)
#   sphinx_panels (0.6.0)
#   sphinxext-archive (0.1)
#   snapshotqt_directive (0.1)
#   nbsphinx (0.8.11)

# Traceback:
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/sphinx/cmd/build.py", line 298, in 
build_main
app.build(args.force_all, args.filenames)
  File "/usr/lib/python3/dist-packages/sphinx/application.py", line 354, in 
build
self.builder.build_update()
  File "/usr/lib/python3/dist-packages/sphinx/builders/__init__.py", line 290, 
in build_update
self.build(['__all__'], to_build)
  File "/usr/lib/python3/dist-packages/sphinx/builders/__init__.py", line 363, 
in build
self.write(docnames, list(updated_docnames), method)
  File "/usr/lib/python3/dist-packages/sphinx/util/display.py", line 92, in 
wrapper
return f(*args, **kwargs)
   ^^
  File "/usr/lib/python3/dist-packages/sphinx/builders/manpage.py", line 103, 
in write
docwriter.write(largetree, destination)
  File "/usr/lib/python3/dist-packages/docutils/writers/__init__.py", line 80, 
in write
self.translate()
  File "/usr/lib/python3/dist-packages/sphinx/writers/manpage.py", line 35, in 
translate
visitor = self.builder.create_translator(self.document, self.builder)
  ^^^
  File "/usr/lib/python3/dist-packages/sphinx/builders/__init__.py", line 119, 
in create_translator
return self.app.registry.create_translator(self, *args)
   
  File "/usr/lib/python3/dist-packages/sphinx/registry.py", line 353, in 
create_translator
setattr(translator, 'visit_' + name, MethodType(visit, translator))
 ^
TypeError: first argument must be callable



Cheers

Frederic

-- System Information:
Debian Release: 12.4
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable-security'), (500, 
'proposed-updates'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.1.0-17-amd64 (SMP w/128 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages python3-sphinx depends on:
ii  python3 3.11.2-1+b1
ii  python3-alabaster   0.7.12-1
ii  python3-babel   2.10.3-1
ii  python3-distutils   3.11.2-3
ii  python3-docutils0.19+dfsg-6
ii  python3-imagesize   1.4.1-1
ii  python3-importlib-metadata  4.12.0-1
ii  python3-jinja2  3.1.2-1
ii  python3-packaging   23.0-1
ii  python3-pygments2.14.0+dfsg-1
ii  python3-requests2.28.1+dfsg-1
ii  python3-snowballstemmer 2.2.0-2
ii  sphinx-common   5.3.0-4

Versions of packages python3-sphinx recommends:
ii  make 4.3-4.1
ii  python3-pil  9.4.0-1.1+b1

Versions of packages python3-sphinx suggests:
pn  dvipng 
ii  fonts-freefont-otf 20120503-10
ii  imagemagick-6.q16  8:6.9.11.60+dfsg-1.6
pn  latexmk
ii  libjs-mathjax  2.7.9+dfsg-1
ii  python3-lib2to33.11.2-3
ii  python3-sphinx-rtd-theme   1.2.0+dfsg-1
pn  sphinx-doc 
ii  tex-gyre   20180621-6
ii  texlive-fonts-recommended  2022.20230122-3
ii  texlive-latex-extra2022.20230122-4
ii  texlive-latex-recommended  2022.20230122-3
ii  texlive-plain-generic  2022.20230122-4

-- 

Bug#1063028: cglm: 9.2.0 is not API compatible with 9.1.0

[Picca Frédéric-Emmanuel]

Source: cglm
Severity: important

Dear Maintainer,


While working on my 'hkl' package I now have an FTBFS due to the 0.9.2 cglm 
version


The error is

hkl-binoculars-geometry.c: In function 
‘hkl_binoculars_parameter_transformation_get’:
hkl-binoculars-geometry.c:45:45: error: incompatible type for argument 1 of 
‘glms_rotate_atm’
   45 | r = glms_rotate_atm(m, pivot, angle, axis);
  | ^
  | |
  | mat4s
In file included from /usr/include/cglm/struct.h:28,
 from hkl-binoculars-private.h:25,
 from hkl-binoculars-geometry.c:25:
/usr/include/cglm/struct/affine.h:135:23: note: expected ‘vec3s’ but argument 
is of type ‘mat4s’
  135 | glms_rotate_atm(vec3s pivot, float angle, vec3s axis) {
  | ~~^

And Indeed a diff between 0.9.2 and 0.9.1 gives

diff --git a/include/cglm/struct/affine.h b/include/cglm/struct/affine.h
index bc62846..2e24fd5 100644
--- a/include/cglm/struct/affine.h
+++ b/include/cglm/struct/affine.h
@@ -22,7 +22,7 @@
CGLM_INLINE mat4s glms_rotate_make(float angle, vec3s axis);
CGLM_INLINE mat4s glms_rotate(mat4s m, float angle, vec3s axis);
CGLM_INLINE mat4s glms_rotate_at(mat4s m, vec3s pivot, float angle, vec3s 
axis);
-   CGLM_INLINE mat4s glms_rotate_atm(mat4s m, vec3s pivot, float angle, vec3s 
axis);
+   CGLM_INLINE mat4s glms_rotate_atm(vec3s pivot, float angle, vec3s axis);
CGLM_INLINE mat4s glms_spin(mat4s m, float angle, vec3s axis);
CGLM_INLINE vec3s glms_decompose_scalev(mat4s m);
CGLM_INLINE bool  glms_uniscaled(mat4s m);

it it expected ?

I do not know how many project are affected by this API breakage since 
build-rdeps is not working anymore on my system.

It would be great to upload into experimental and request a full rebuild of all 
rdeps.

Thanks for considering

Frederic

-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 6.6.13-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#1063027: devscripts: [build-rdeps] does not work anymore

[Picca Frédéric-Emmanuel]

Package: devscripts
Version: 2.23.7
Severity: important

Dear Maintainer,

While reporting a bug against cglm, I tried build-rdeps but got this message...


$ build-rdeps cglm
Reverse Build-depends in experimental/main:
---

Use of uninitialized value $source_file in concatenation (.) or string at 
/usr/bin/build-rdeps line 341.
Fatal error in module dose_common.input: 
 Input file  does not exist.
No reverse build-depends found for cglm.

So it seems to me that build-rdeps is not working anymore...

Cheers



-- Package-specific info:

--- /etc/devscripts.conf ---
Empty.

--- ~/.devscripts ---
BTS_SMTP_HOST=reportbug.debian.org

-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 6.6.13-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages devscripts depends on:
ii  dpkg-dev  1.22.4
ii  file  1:5.45-2+b1
ii  gnupg 2.2.40-1.1
ii  gnupg22.2.40-1.1
ii  gpgv  2.2.40-1.1+b1
ii  libfile-dirlist-perl  0.05-3
ii  libfile-homedir-perl  1.006-2
ii  libfile-touch-perl0.12-2
ii  libfile-which-perl1.27-2
ii  libipc-run-perl   20231003.0-1
ii  libmoo-perl   2.005005-1
ii  libwww-perl   6.76-1
ii  patchutils0.4.2-1
ii  perl  5.38.2-3
ii  python3   3.11.6-1
ii  sensible-utils0.0.20
ii  wdiff 1.2.2-6

Versions of packages devscripts recommends:
ii  apt 2.7.10
ii  curl8.6.0-1
ii  dctrl-tools 2.24-3+b1
ii  debian-keyring  2023.12.24
ii  dput-ng [dput]  1.38
ii  equivs  2.3.1
ii  libdistro-info-perl 1.7
ii  libdpkg-perl1.22.4
ii  libencode-locale-perl   1.05-3
ii  libgit-wrapper-perl 0.048-2
pn  libgitlab-api-v4-perl   
ii  libjson-perl4.1-1
ii  liblist-compare-perl0.55-2
ii  liblwp-protocol-https-perl  6.12-1
ii  libsoap-lite-perl   1.27-3
ii  libstring-shellquote-perl   1.04-3
ii  libtry-tiny-perl0.31-2
ii  liburi-perl 5.25-1
ii  licensecheck3.3.9-1
ii  lintian 2.116.3
ii  man-db  2.12.0-3
ii  patch   2.7.6-7
ii  pristine-tar1.50
ii  python3-apt 2.7.5
ii  python3-debian  0.1.49
ii  python3-magic   2:0.4.27-2
ii  python3-requests2.31.0+dfsg-1
ii  python3-unidiff 0.7.3-1
ii  python3-xdg 0.28-2
ii  strace  6.5-0.1
ii  unzip   6.0-28
ii  wget1.21.4-1+b1
ii  xz-utils5.4.5-0.3

Versions of packages devscripts suggests:
ii  adequate 0.15.9
ii  at   3.2.5-2.1
ii  autopkgtest  5.32
pn  bls-standalone   
ii  build-essential  12.10
pn  check-all-the-things 
pn  cvs-buildpackage 
ii  debhelper13.13
pn  diffoscope   
pn  disorderfs   
ii  dose-extra   7.0.0-4+b1
pn  duck 
ii  elpa-devscripts  40.5
pn  faketime 
ii  gnuplot-qt [gnuplot] 5.4.4+dfsg1-2+b2
pn  how-can-i-help   
ii  libauthen-sasl-perl  2.1700-1
pn  libdbd-pg-perl   
ii  libfile-desktopentry-perl0.22-3
pn  libterm-size-perl
ii  libtimedate-perl 2.3300-2
pn  libyaml-syck-perl
ii  mailutils [mailx]1:3.16-1+b2
pn  mmdebstrap   
ii  mutt 2.2.12-0.1
ii  openssh-client [ssh-client]  1:9.6p1-3
ii  piuparts 1.3
pn  postgresql-client
pn  pristine-lfs 
ii  quilt0.67+really0.67-4
ii  ratt 0.0~git20190123.9e77a6d-1+b9
pn  reprotest
pn  svn-buildpackage 
pn  w3m  

-- no debconf information

Bug#1062979: tango-db: the upgraded version of tango-db is not compatible with maria-db from bookworm

[Picca Frédéric-Emmanuel]

Package: tango-db
Severity: important
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

I upgraded a computer from bullseye to bookwork. tango-db was
installed with the bulleyes version before the upgrade.

The upgrade went fine, so I installed the tango-starter (bookworm
version).

BUT the tango-starter could not register in the database.

So I wipeout all of tango-xxx, remove the sql database.

then I re-installed the tango-db and tango-starter. This time the
starter worked out of the box.

In fact I was affected by this

https://gitlab.com/tango-controls/TangoDatabase/-/issues/69

the fresh install script of the sql databse and the upgrade scripts
used by dbconfig-common, does not produce the same sql database at the
end.

the new create_db_tables was modified like this

https://gitlab.com/tango-controls/TangoDatabase/-/merge_requests/82/diffs

So during the upgrade the tables should be alter to take into account
this modification.

https://gitlab.com/tango-controls/TangoDatabase/-/issues/26

the bug is triggered only because mariadb changed it's behaviour
between bullseye and bookworm.

It would be great to fix bookworm.

thanks

Frederic


-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.6.13-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages tango-db depends on:
pn  dbconfig-mysql | dbconfig-no-thanks  
ii  debconf [debconf-2.0]1.5.85
ii  init-system-helpers  1.66
ii  libc62.37-15
ii  libgcc-s114-20240201-3
ii  libmariadb3  1:10.11.6-2
pn  libomniorb4-3
pn  libomnithread4   
ii  libstdc++6   14-20240201-3
pn  libtango-tools   
pn  libtango95   

Versions of packages tango-db recommends:
pn  default-mysql-client  

tango-db suggests no packages.

Bug#1061938: pyfai: Segfault when closing a dialg

[Picca Frédéric-Emmanuel]

Package: pyfai
Version: 2023.9.0-1
Severity: important

Dear Maintainer,

Could you apply this patch in order to avoid a segfault in pyFAI-calib2

https://github.com/silx-kit/pyFAI/pull/2064

it correspond to this bug report

https://github.com/silx-kit/pyFAI/issues/2047

Cheers


-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 6.6.13-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages pyfai depends on:
ii  python33.11.6-1
ii  python3-numpy  1:1.24.2-2
ii  python3-pyfai  2023.9.0-1+b1

pyfai recommends no packages.

pyfai suggests no packages.

-- no debconf information

Bug#1060807: zfp: please compile zfp with -DBIT_STREAM_WORD_TYPE=uint8

[Picca Frédéric-Emmanuel]

Source: zfp
Severity: important

Dear Maintainer,

since the upload of zfp 1.0.1, the test of hdf5plugin are failing

look at here

https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1059842

It seems to me that the zfp library should be recompile with the previous flag.

thanks

Frederic.


PS: Il also recompiled locally h5z-zfp and now the unit test is also failling 
with these errors

H5Dcreate failed at line 405, errno=2 (No such file or directory)
 [ESC[31;01mFAILEDESC[0m]
./test_write_plugin zfpmode=2 prec=16 ...HDF5-DIAG: Error 
detected in HDF5 (1.10.10) thread 1:
  #000: ../../../src/H5D.c line 140 in H5Dcreate2(): unable to create dataset
major: Dataset
minor: Unable to initialize object
  #001: ../../../src/H5Dint.c line 328 in H5D__create_named(): unable to create 
and link to dataset
major: Dataset
minor: Unable to initialize object
  #002: ../../../src/H5L.c line 1542 in H5L_link_object(): unable to create new 
link to object
major: Links
minor: Unable to initialize object
  #003: ../../../src/H5L.c line 1785 in H5L__create_real(): can't insert link
major: Links
minor: Unable to insert object
  #004: ../../../src/H5Gtraverse.c line 830 in H5G_traverse(): internal path 
traversal failed
major: Symbol table
minor: Object not found
  #005: ../../../src/H5Gtraverse.c line 607 in H5G__traverse_real(): traversal 
operator failed
major: Symbol table
minor: Callback failed
  #006: ../../../src/H5L.c line 1590 in H5L__link_cb(): unable to create object
major: Links
minor: Unable to initialize object
  #007: ../../../src/H5Oint.c line 2459 in H5O_obj_create(): unable to open 
object
major: Object header
minor: Can't open object
  #008: ../../../src/H5Doh.c line 287 in H5O__dset_create(): unable to create 
dataset
major: Dataset
minor: Unable to initialize object
  #009: ../../../src/H5Dint.c line 1196 in H5D__create(): I/O filters can't 
operate on this dataset
major: Invalid arguments to routine
minor: Unable to initialize object
  #010: ../../../src/H5Z.c line 891 in H5Z_can_apply(): unable to apply filter
major: Data filters
minor: Error from filter 'can apply' callback
  #011: ../../../src/H5Z.c line 852 in H5Z__prepare_prelude_callback_dcpl(): 
unable to apply filter
major: Data filters
minor: Error from filter 'can apply' callback
  #012: ../../../src/H5Z.c line 753 in H5Z__prelude_callback(): error during 
user callback
major: Data filters
minor: Error from filter 'can apply' callback
  #013: H5Zzfp.c line 158 in H5Z_zfp_can_apply(): ZFP lib not compiled with 
-DBIT_STREAM_WORD_TYPE=uint8
major: Data filters
minor: Unable to initialize object
H5Dcreate failed at line 405, errno=2 (No such file or directory)
 [ESC[31;01mFAILEDESC[0m]



-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 6.6.9-amd64 (SMP w/4 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#1058026: PyPI’s XML-RPC API is deprecated, causing errors when downloading packages.

[Picca Frédéric-Emmanuel]

Source: stdeb
Severity: important
X-Debbugs-Cc: pi...@debian.org

Hello,

while trying to use pupy-install, I got this error message

/tmp$ pypi-download at
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/stdeb/transport.py", line 62, in request
resp.raise_for_status()
  File "/usr/lib/python3/dist-packages/requests/models.py", line 1021, in 
raise_for_status
raise HTTPError(http_error_msg, response=self)
requests.exceptions.HTTPError: 404 Client Error: Not Found for url: 
https://pypi.org//RPC2

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/bin/pypi-download", line 35, in 
main()
  File "/usr/bin/pypi-download", line 27, in main
tarball_fname = get_source_tarball(
^^^
  File "/usr/lib/python3/dist-packages/stdeb/downloader.py", line 109, in 
get_source_tarball
download_url, expected_md5_digest = find_tar_gz(package_name,
^
  File "/usr/lib/python3/dist-packages/stdeb/downloader.py", line 39, in 
find_tar_gz
all_releases = _call(pypi.package_releases, package_name, show_hidden)
   ^^^
  File "/usr/lib/python3/dist-packages/stdeb/downloader.py", line 89, in _call
return callable_(*args, **kwargs)
   ^^
  File "/usr/lib/python3.11/xmlrpc/client.py", line 1122, in __call__
return self.__send(self.__name, args)
   ^^
  File "/usr/lib/python3.11/xmlrpc/client.py", line 1464, in __request
response = self.__transport.request(
   ^
  File "/usr/lib/python3/dist-packages/stdeb/transport.py", line 64, in request
raise xmlrpc.ProtocolError(
xmlrpc.client.ProtocolError: https://pypi.org//RPC2: 404 404 
Client Error: Not Found for url: https://pypi.org//RPC2>


It seems that a patch exist in order to use the json interface instead of the 
now removed xml-rpc interface.

https://github.com/astraw/stdeb/pull/195

please considere adding this patch to the package.

thanks

Frederic






-- System Information:
Debian Release: 12.2
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable-security'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.1.0-13-amd64 (SMP w/4 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#1055915: sbuild-debian-developer-setup: Can not create an unstable chroot

[Picca Frédéric-Emmanuel]

Package: sbuild-debian-developer-setup
Version: 0.85.4
Severity: important
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

I am trying to regenerate my chroot since the usrmerge issue with old chroot, 
but I end up with this error

~/debian/science-team/c-blosc2$ sudo sbuild-debian-developer-setup
info: L'utilisateur « picca » appartient déjà au groupe « sbuild ».
I: SUITE: unstable
I: TARGET: /srv/chroot/unstable-amd64-sbuild
I: MIRROR: http://localhost:3142/deb.debian.org/debian
I: Running debootstrap --arch=amd64 --variant=buildd --verbose 
--include=fakeroot,build-essential,eatmydata --components=main --resolve-deps 
unstable /srv/chroot/unstable-amd64-sbuild 
http://localhost:3142/deb.debian.org/debian
E: No such script: /debootstrap/scripts/unstable
E: Error running debootstrap at /usr/bin/sbuild-createchroot line 438,  
line 2.
sbuild-createchroot failed:  at /usr/bin/sbuild-debian-developer-setup line 63.

Cheers

-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.5.0-3-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages sbuild-debian-developer-setup depends on:
ii  apt-cacher-ng   3.7.4-1+b2
ii  cron [cron-daemon]  3.0pl1-178
ii  debootstrap 1.0.133
ii  perl5.36.0-9
ii  sbuild  0.85.4
ii  schroot 1.6.13-3+b2

sbuild-debian-developer-setup recommends no packages.

sbuild-debian-developer-setup suggests no packages.

-- no debconf information

Bug#1053701: cp: cannot stat '/etc/fonts/fonts.conf': No such file or directory

[Picca Frédéric-Emmanuel]

Package: linux-image-6.1.0-13-amd64
Version: 6.1.55-1
Severity: normal

Dear Maintainer,

I am preparing a virtual machine wher eI install the linux-headers-amd54 
package.

But it failed with this error message

Setting up linux-image-6.1.0-13-amd64 (6.1.55-1) ...^M
I: /vmlinuz is now a symlink to boot/vmlinuz-6.1.0-13-amd64^M
I: /initrd.img is now a symlink to boot/initrd.img-6.1.0-13-amd64^M
/etc/kernel/postinst.d/initramfs-tools:^M
update-initramfs: Generating /boot/initrd.img-6.1.0-13-amd64^M
cp: cannot stat '/etc/fonts/fonts.conf': No such file or directory^M
E: /usr/share/initramfs-tools/hooks/plymouth failed with return 1.^M
update-initramfs: failed for /boot/initrd.img-6.1.0-13-amd64 with 1.^M
run-parts: /etc/kernel/postinst.d/initramfs-tools exited with return code 1^M
dpkg: error processing package linux-image-6.1.0-13-amd64 (--configure):^M
 installed linux-image-6.1.0-13-amd64 package post-installation script 
subprocess returned error exit status 1^M

thanks for considering.

I reported the bug here, because I do not know if this is a hernel, initramfs 
or plymouth bug...

Cheers


-- System Information:
Debian Release: 11.8
  APT prefers oldstable-updates
  APT policy: (500, 'oldstable-updates'), (500, 'oldstable-security'), (500, 
'oldstable')
Architecture: amd64 (x86_64)

Kernel: Linux 5.10.0-24-amd64 (SMP w/128 CPU threads)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#1051781: python3-h5py: where is the egg files

[Picca Frédéric-Emmanuel]

Package: python3-h5py
Version: 3.7.0-8
Followup-For: Bug #1051781
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

If I create a link

ln -s h5py._debian_h5py_serial-3.7.0.dist-info h5py-3.7.0.dist-info

under /usr/lib/python3/dist-packages

It solves my issue.

So my question is should the python-h5py package provide the unique
h5py-3.7.0.dist-info directory for both mpi and serial implementation ?

Cheers




-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.4.0-1-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages python3-h5py depends on:
ii  python3-h5py-serial  3.7.0-8

python3-h5py recommends no packages.

Versions of packages python3-h5py suggests:
pn  python-h5py-doc  

-- no debconf information

Bug#1051781: python3-h5py: where is the egg files

[Picca Frédéric-Emmanuel]

Package: python3-h5py
Version: 3.7.0-8
Severity: important
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

I am thre maintainer of silx

This package depende of python3-h5py and contain entry points.

The build  is ok, but once installed I get this error message when I try to 
start the application

$ silx view
Traceback (most recent call last):
  File "/usr/bin/silx", line 33, in 
sys.exit(load_entry_point('silx==1.1.2', 'console_scripts', 'silx')())
 
  File "/usr/lib/python3/dist-packages/silx/__main__.py", line 67, in main
status = launcher.execute(sys.argv)
 ^^
  File "/usr/lib/python3/dist-packages/silx/utils/launcher.py", line 294, in 
execute
return command.execute(command_argv)
   ^
  File "/usr/lib/python3/dist-packages/silx/utils/launcher.py", line 128, in 
execute
status = func(argv)
 ^^
  File "/usr/lib/python3/dist-packages/silx/app/view/main.py", line 214, in main
mainQt(options)
  File "/usr/lib/python3/dist-packages/silx/app/view/main.py", line 156, in 
mainQt
import silx.gui.utils.matplotlib  # noqa

  File "/usr/lib/python3/dist-packages/silx/gui/utils/matplotlib.py", line 39, 
in 
from pkg_resources import parse_version
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3327, 
in 
@_call_aside
 ^^^
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3302, 
in _call_aside
f(*args, **kwargs)
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3340, 
in _initialize_master_working_set
working_set = WorkingSet._build_master()
  ^^
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 631, in 
_build_master
ws.require(__requires__)
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 968, in 
require
needed = self.resolve(parse_requirements(requirements))
 ^^
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 829, in 
resolve
dist = self._resolve_dist(
   ^^^
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 870, in 
_resolve_dist
raise DistributionNotFound(req, requirers)
pkg_resources.DistributionNotFound: The 'h5py' distribution was not found and 
is required by hdf5plugin, silx


$ apt show python3-silx
Package: python3-silx
Version: 1.1.2+dfsg-2
Priority: optional
Section: python
Source: silx
Maintainer: Debian Science Maintainers 

Installed-Size: 13,1 MB
Depends: python3 (<< 3.12), python3 (>= 3.11~), python3-dateutil, 
python3-fabio, python3-h5py, python3-hdf5plugin, python3-mako, 
python3-matplotlib, python3-numpy (>= 1:1.22.0), python3-numpy-abi9, 
python3-opengl, python3-pil, python3-pkg-resources, python3-pyopencl, 
python3-pyqt5, python3-pyqt5.qtopengl, python3-pyqt5.qtsvg, python3-qtconsole, 
python3-scipy, python3:any, libc6 (>= 2.33), libgcc-s1 (>= 3.0), libgomp1 (>= 
4.9), libstdc++6 (>= 5.2)
Homepage: https://github.com/silx-kit/silx


So my question is what should be canged in h5py in order to make this work.

thanks

Frederic



-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.4.0-1-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages python3-h5py depends on:
ii  python3-h5py-serial  3.7.0-8

python3-h5py recommends no packages.

Versions of packages python3-h5py suggests:
pn  python-h5py-doc  

-- no debconf information

Bug#1051771: RM: genx [arm64 armel armhf i386 mips64el s390x] -- ROM; failure due to the numba dependency

[Picca Frédéric-Emmanuel]

Package: ftp.debian.org
Severity: normal
User: ftp.debian@packages.debian.org
Usertags: remove
X-Debbugs-Cc: g...@packages.debian.org, pi...@debian.org
Control: affects -1 + src:genx

Hello, the new version of genx added test about the numba part. Currently the 
numba  package is in bad shape for the listed architecture. So it should be 
great to reset the status of genx and  migrate with only the few working 
architectures. If numba improved during the release cycle then more 
architecture could be supported by genx.

thanks for considering

Frederic

Bug#1051767: RM: bornagain [arm64 armel armhf i386 ppc64el s390x] -- ROM; not yet supported by upstream

[Picca Frédéric-Emmanuel]

Package: ftp.debian.org
Severity: normal
User: ftp.debian@packages.debian.org
Usertags: remove
X-Debbugs-Cc: bornag...@packages.debian.org, pi...@debian.org
Control: affects -1 + src:bornagain


previously the unit test were not activated. So now we have a real picture of 
what is working and what is not working.

thanks

Bug#1051614: onednn: FTBFS on bookworm

[Picca Frédéric-Emmanuel]

Source: onednn
Severity: normal

Dear Maintainer,

I am reparing local backports of onednn on bookwork in order to backports 
pytorch-cuda for my institut.

But it FTBFS due to missing symbols.

dpkg-gensymbols: warning: debian/libdnnl2/DEBIAN/symbols doesn't match 
completely debian/libdnnl2.symbols.amd64
--- debian/libdnnl2.symbols.amd64 (libdnnl2_2.7.4-2~bpo12+1_amd64)
+++ dpkg-gensymbolsEvCmkj   2023-09-10 15:09:46.982563116 +
@@ -54,11 +54,16 @@
  
_ZN9__gnu_cxx12__to_xstringINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEET_PFiPT0_mPKS8_P13__va_list_tagEmSB_z@Base
 2.2.2
  _ZN9__gnu_cxx6__stoaIlicJiEEET0_PFT_PKT1_PPS3_DpT2_EPKcS5_PmS9_@Base 2.0
  _ZNK4dnnl4impl10bfloat16_tcvfEv@Base 2.0
+ 
_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb119_M_find_before_nodeEmRS7_m@Base
 2.7.4-2~bpo12+1
+ 
_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb119_M_find_before_nodeEmRS7_m@Base
 2.7.4-2~bpo12+1
+ 
_ZNKSt10_HashtableIPvSt4pairIKS0_S0_ESaIS3_ENSt8__detail10_Select1stESt8equal_toIS0_ESt4hashIS0_ENS5_18_Mod_range_hashingENS5_20_Default_ranged_hashENS5_20_Prime_rehash_policyENS5_17_Hashtable_traitsILb0ELb0ELb14findERS2_@Base
 2.7.4-2~bpo12+1
+ 
_ZNKSt10_HashtableIiiSaIiENSt8__detail9_IdentityESt8equal_toIiESt4hashIiENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb14findERKi@Base
 2.7.4-2~bpo12+1
  
_ZNKSt10_HashtableImSt4pairIKmmESaIS2_ENSt8__detail10_Select1stESt8equal_toImESt4hashImENS4_18_Mod_range_hashingENS4_20_Default_ranged_hashENS4_20_Prime_rehash_policyENS4_17_Hashtable_traitsILb0ELb0ELb119_M_find_before_nodeEmRS1_m@Base
 2.0
- 
_ZNSt10_HashtableI16dnnl_data_type_tS0_SaIS0_ENSt8__detail9_IdentityESt8equal_toIS0_ESt4hashIiENS2_18_Mod_range_hashingENS2_20_Default_ranged_hashENS2_20_Prime_rehash_policyENS2_17_Hashtable_traitsILb0ELb1ELb19_M_rehashEmRKm@Base
 2.7.4
- 
_ZNSt10_HashtableI16dnnl_data_type_tS0_SaIS0_ENSt8__detail9_IdentityESt8equal_toIS0_ESt4hashIiENS2_18_Mod_range_hashingENS2_20_Default_ranged_hashENS2_20_Prime_rehash_policyENS2_17_Hashtable_traitsILb0ELb1ELb1C1EmRKS7_RKS5_RKS1_@Base
 2.7.4
+ 
_ZNKSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE4findERS1_@Base
 2.7.4-2~bpo12+1
+#MISSING: 2.7.4-2~bpo12+1# 
_ZNSt10_HashtableI16dnnl_data_type_tS0_SaIS0_ENSt8__detail9_IdentityESt8equal_toIS0_ESt4hashIiENS2_18_Mod_range_hashingENS2_20_Default_ranged_hashENS2_20_Prime_rehash_policyENS2_17_Hashtable_traitsILb0ELb1ELb19_M_rehashEmRKm@Base
 2.7.4
+#MISSING: 2.7.4-2~bpo12+1# 
_ZNSt10_HashtableI16dnnl_data_type_tS0_SaIS0_ENSt8__detail9_IdentityESt8equal_toIS0_ESt4hashIiENS2_18_Mod_range_hashingENS2_20_Default_ranged_hashENS2_20_Prime_rehash_policyENS2_17_Hashtable_traitsILb0ELb1ELb1C1EmRKS7_RKS5_RKS1_@Base
 2.7.4
  
_ZNSt10_HashtableI16dnnl_data_type_tS0_SaIS0_ENSt8__detail9_IdentityESt8equal_toIS0_ESt4hashIiENS2_18_Mod_range_hashingENS2_20_Default_ranged_hashENS2_20_Prime_rehash_policyENS2_17_Hashtable_traitsILb0ELb1ELb1C1IPKS0_EET_SH_mRKS7_RKS5_RKS1_St17integral_constantIbLb1EE@Base
 2.2.2
- 
_ZNSt10_HashtableI16dnnl_data_type_tS0_SaIS0_ENSt8__detail9_IdentityESt8equal_toIS0_ESt4hashIiENS2_18_Mod_range_hashingENS2_20_Default_ranged_hashENS2_20_Prime_rehash_policyENS2_17_Hashtable_traitsILb0ELb1ELb1C2EmRKS7_RKS5_RKS1_@Base
 2.7.4
+#MISSING: 2.7.4-2~bpo12+1# 
_ZNSt10_HashtableI16dnnl_data_type_tS0_SaIS0_ENSt8__detail9_IdentityESt8equal_toIS0_ESt4hashIiENS2_18_Mod_range_hashingENS2_20_Default_ranged_hashENS2_20_Prime_rehash_policyENS2_17_Hashtable_traitsILb0ELb1ELb1C2EmRKS7_RKS5_RKS1_@Base
 2.7.4
  
_ZNSt10_HashtableI16dnnl_data_type_tS0_SaIS0_ENSt8__detail9_IdentityESt8equal_toIS0_ESt4hashIiENS2_18_Mod_range_hashingENS2_20_Default_ranged_hashENS2_20_Prime_rehash_policyENS2_17_Hashtable_traitsILb0ELb1ELb1C2IPKS0_EET_SH_mRKS7_RKS5_RKS1_St17integral_constantIbLb1EE@Base
 2.2.2
  
_ZNSt10_HashtableI16dnnl_data_type_tS0_SaIS0_ENSt8__detail9_IdentityESt8equal_toIS0_ESt4hashIiENS2_18_Mod_range_hashingENS2_20_Default_ranged_hashENS2_20_Prime_rehash_policyENS2_17_Hashtable_traitsILb0ELb1ELb1D1Ev@Base
 2.2.2
  
_ZNSt10_HashtableI16dnnl_data_type_tS0_SaIS0_ENSt8__detail9_IdentityESt8equal_toIS0_ESt4hashIiENS2_18_Mod_range_hashingENS2_20_Default_ranged_hashENS2_20_Prime_rehash_policyENS2_17_Hashtable_traitsILb0ELb1ELb1D2Ev@Base
 2.2.2
@@ -69,6 +74,8 @@
  
_ZNSt10_HashtableI20dnnl_cpu_isa_hints_tSt4pairIKS0_jESaIS3_ENSt8__detail10_Select1stESt8equal_toIS0_ESt4hashIiENS5_18_Mod_range_hashingENS5_20_Default_ranged_hashENS5_20_Prime_rehash_policyENS5_17_Ha

Bug#1051342: genx: Can not quit the application from the Menu

[Picca Frédéric-Emmanuel]

Source: genx
Severity: normal
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

If I try to quite the application with the menu quit, I get this

CRITICAL: uncought python error
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/genx/gui/main_window.py", line 1418, in 
eh_mb_quit
if event.CanVeto() and not self.model_control.saved:
   ^
AttributeError: 'CommandEvent' object has no attribute 'CanVeto'
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/genx/gui/main_window.py", line 1418, in 
eh_mb_quit
if event.CanVeto() and not self.model_control.saved:
   ^
AttributeError: 'CommandEvent' object has no attribute 'CanVeto'
CRITICAL: uncought python error
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/genx/gui/main_window.py", line 1418, in 
eh_mb_quit
if event.CanVeto() and not self.model_control.saved:
   ^
AttributeError: 'CommandEvent' object has no attribute 'CanVeto'
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/genx/gui/main_window.py", line 1418, in 
eh_mb_quit
if event.CanVeto() and not self.model_control.saved:
   ^
AttributeError: 'CommandEvent' object has no attribute 'CanVeto'


-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.4.0-1-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#1042949: /usr/bin/apply-multiarch-hints: apply-multiarch-hints failed with TypeError

[Picca Frédéric-Emmanuel]

Package: lintian-brush
Version: 0.149
Severity: normal
File: /usr/bin/apply-multiarch-hints

Dear Maintainer,

I try to use the multiarch hints but I get this error message

Downloading new version of multi-arch hints.
Traceback (most recent call last):
  File "/usr/bin/apply-multiarch-hints", line 8, in 
sys.exit(main())
 ^^
  File "/usr/lib/python3/dist-packages/lintian_brush/multiarch_hints.py", line 
512, in main
MultiArchHintFixer(hints),
^
TypeError: No constructor defined


-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 6.4.0-1-amd64 (SMP w/4 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_WARN, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages lintian-brush depends on:
ii  devscripts   2.23.5
ii  libc62.37-6
ii  libgcc-s113.1.0-9
ii  python3  3.11.4-5
ii  python3-breezy   3.3.3-2
ii  python3-debian   0.1.49
ii  python3-debmutate0.66
ii  python3-distro-info  1.5
ii  python3-dulwich  0.21.5-1
ii  python3-iniparse 0.5-1
ii  python3-iso8601  1.0.2-1
ii  python3-levenshtein  0.12.2-2+b4
ii  python3-psycopg2 2.9.6-2
ii  python3-pyinotify0.9.6-2
ii  python3-ruamel.yaml  0.17.21-1
ii  python3-semver   2.10.2-3
ii  python3-tomlkit  0.11.8-1
ii  python3-tqdm 4.64.1-1
ii  python3-upstream-ontologist  0.1.35-1

Versions of packages lintian-brush recommends:
ii  debhelper  13.11.4
ii  decopy 0.2.4.8-0.1
ii  dos2unix   7.5.0-1
ii  gpg2.2.40-1.1
ii  lintian2.116.3
ii  ognibuild  0.0.18+git20230208.1.9b890a2-1
ii  python3-bs44.12.2-2
ii  python3-debianbts  4.0.1
ii  python3-docutils   0.19+dfsg-6
ii  python3-lxml   4.9.3-1
ii  python3-markdown   3.4.4-1

Versions of packages lintian-brush suggests:
ii  brz-debian 2.8.78
ii  git-buildpackage   0.9.30
pn  gnome-pkg-tools
ii  po-debconf 1.0.21+nmu1
pn  postgresql-common  

-- no debconf information

Bug#1042878: FTBFS: on all architectures

[Picca Frédéric-Emmanuel]

Source: epics-base
Severity: important

Dear Maintainer,

please fix these FTBFS

-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 6.4.0-1-amd64 (SMP w/4 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_WARN, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#1042830: lintian-brush: refuse to proceed when files affected by gitattributes

[Picca Frédéric-Emmanuel]

Package: lintian-brush
Version: 0.149
Severity: normal

Dear Maintainer,


I am preparing the new hyperspy package but when I try to run lintian-brush on 
it, I get this message

$ lintian-brush 
/home/picca/debian/science-team/hyperspy: Please commit pending changes and 
remove unknown files first.

the versbose version is a bit more interesting...

$ lintian-brush --verbose
/home/picca/debian/science-team/hyperspy: Please commit pending changes and 
remove unknown files first.
modified:
  doc/make.bat
  examples/hyperspy_as_library/coreloss_spectrum.msa
  examples/hyperspy_as_library/lowloss_spectrum.msa
  hyperspy/tests/io/msa_files/example1.msa
  hyperspy/tests/io/msa_files/example1_wrong_date.msa
  hyperspy/tests/io/msa_files/example2.msa
  hyperspy/tests/io/msa_files/minimum_metadata.msa
  release_windows.bat


Indeed these files are  affected by .gitattributes

# Set default behaviour, in case users don't have core.autocrlf set.
* text=auto
*.py diff=python
*.bateol=crlf
*.msaeol=crlf
*.nsieol=crlf   

.gitattributes (END)


so my question who can we fix this issue.

This is second time thaht I am affected by this .gitattribute story.
upstream are using windows for their developpement.

Cheers

Frederic


-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 6.4.0-1-amd64 (SMP w/4 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_WARN, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages lintian-brush depends on:
ii  devscripts   2.23.5
ii  libc62.37-6
ii  libgcc-s113.1.0-9
ii  python3  3.11.4-5
ii  python3-breezy   3.3.3-2
ii  python3-debian   0.1.49
ii  python3-debmutate0.66
ii  python3-distro-info  1.5
ii  python3-dulwich  0.21.5-1
ii  python3-iniparse 0.5-1
ii  python3-iso8601  1.0.2-1
ii  python3-levenshtein  0.12.2-2+b4
ii  python3-psycopg2 2.9.6-2
ii  python3-pyinotify0.9.6-2
ii  python3-ruamel.yaml  0.17.21-1
ii  python3-semver   2.10.2-3
ii  python3-tomlkit  0.11.8-1
ii  python3-tqdm 4.64.1-1
ii  python3-upstream-ontologist  0.1.35-1

Versions of packages lintian-brush recommends:
ii  debhelper  13.11.4
ii  decopy 0.2.4.8-0.1
ii  dos2unix   7.5.0-1
ii  gpg2.2.40-1.1
ii  lintian2.116.3
ii  ognibuild  0.0.18+git20230208.1.9b890a2-1
ii  python3-bs44.12.2-2
ii  python3-debianbts  4.0.1
ii  python3-docutils   0.19+dfsg-6
ii  python3-lxml   4.9.3-1
ii  python3-markdown   3.4.4-1

Versions of packages lintian-brush suggests:
ii  brz-debian 2.8.78
ii  git-buildpackage   0.9.30
pn  gnome-pkg-tools
ii  po-debconf 1.0.21+nmu1
pn  postgresql-common  

-- no debconf information

Bug#1042740: dmrgpp: Please package the new 6.04 version

[Picca Frédéric-Emmanuel]

Source: dmrgpp
Version: 6.02-3
Severity: wishlist

Dear Maintainer,

A new version is available, could you package it


-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 6.4.0-1-amd64 (SMP w/4 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_WARN, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#1042403: pyqt6: could you package the documentation

[Picca Frédéric-Emmanuel]

Source: pyqt6
Severity: normal

Dear Maintainer,

I would be great if we could have the documentation available in a dedicated 
package.
there is a sphinx_qt_documentation extension which rely on intersphinx in order 
to create link
about PyQt5/6 API. to produce some good documentation.

for now there is no package providing this documentation so we can not tune 
intersphinx to look for it on the system.

so it try to find the doc on internet -> broke the debien policy...

Thus we need to deactivate this extension and produce a lower quality 
documentation.

thanks for considering.

Frederic


-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 6.3.0-2-amd64 (SMP w/4 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#1041692: python3-mesonpy: could the build be verbose by default

[Picca Frédéric-Emmanuel]

Package: python3-mesonpy
Version: 0.12.0-2
Severity: normal
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

I am packaging python-fabio and pyfai whcih use this new build system for 
python extensions.

Now blhc complain that the compilation is not verbose.
So I need to add something like this to abtain a verbose output.

override_dh_auto_build:
PYBUILD_BUILD_ARGS="-Ccompile-args=--verbose" dh_auto_build

It seems to me that it will be a lot eaysier to have a default verbose output
instead of modifying each package which use this build system.

thanks for considering

Frederic

-- System Information:
Debian Release: trixie/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.3.0-1-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages python3-mesonpy depends on:
ii  libjs-sphinxdoc 5.3.0-4
ii  meson   1.2.0-1
ii  ninja-build 1.11.1-1
ii  python3 3.11.4-5
ii  python3-pyproject-metadata  0.6.1-3
ii  python3-tomli   2.0.1-2
ii  python3-typing-extensions   4.4.0-1

Versions of packages python3-mesonpy recommends:
ii  patchelf  0.14.3-1+b1

python3-mesonpy suggests no packages.

-- no debconf information

Bug#1041608: RM: python-fabio [s390x] -- ROM; not supported on big endian arch

[Picca Frédéric-Emmanuel]

Package: ftp.debian.org
Severity: normal
User: ftp.debian@packages.debian.org
Usertags: remove
X-Debbugs-Cc: python-fa...@packages.debian.org, pi...@debian.org
Control: affects -1 + src:python-fabio


thanks for considering

Frederic

Bug#1035717: unblock: binoculars/0.0.13-1

[Picca Frédéric-Emmanuel]

96,33 +794,6 @@
 newspace.process_image(coordinates, intensity, weights)
 return newspace
 
-def tovti(self, filename: str) -> None:
-assert self.dimension == 3, "only array with three dimensions are 
allowed"
-
-data = self.photons / self.contributions
-
-spacing = tuple(a.res for a in self.axes.axes)
-origin = tuple(a.min for a in self.axes.axes)
-name = str(tuple(a.label for a in self.axes.axes))
-
-image_data = vtkImageData()
-image_data.SetSpacing(spacing)
-image_data.SetOrigin(origin)
-image_data.SetDimensions(data.shape)
-
-temp_array = numpy.transpose(numpy.flip(data, 2)).flatten()
-temp_array = numpy_support.numpy_to_vtk(temp_array, deep=1)
-
-pd = image_data.GetPointData()
-pd.SetScalars(temp_array)
-pd.GetArray(0).SetName(name)
-
-# export data to file
-writer = vtkXMLImageDataWriter()
-writer.SetFileName(filename)
-writer.SetInputData(image_data)
-writer.Write()
-
 def tofile(self, filename):
 """Store Space in HDF5 file."""
 with util.atomic_write(filename) as tmpname:
@@ -1139,7 +1110,7 @@
 
 
 def make_compatible(spaces):
-if not numpy.alen(numpy.unique(len(space.axes) for space in spaces)) == 1:
+if not len(numpy.unique(len(space.axes) for space in spaces)) == 1:
 raise ValueError("cannot make spaces with different dimensionality 
compatible")
 ax0 = tuple(ax.label for ax in spaces[0].axes)
 resmax = tuple(
diff -Nru binoculars-0.0.12/debian/changelog binoculars-0.0.13/debian/changelog
--- binoculars-0.0.12/debian/changelog  2023-02-21 14:13:26.0 +0100
+++ binoculars-0.0.13/debian/changelog  2023-04-14 19:23:27.0 +0200
@@ -1,3 +1,11 @@
+binoculars (0.0.13-1) unstable; urgency=medium
+
+  * New upstream version 0.0.13
+  * d/control: B-D removed python3-vtk9
+  * d/patches: removed all patch (upstreamed)
+
+ -- Picca Frédéric-Emmanuel   Fri, 14 Apr 2023 19:23:27 +0200
+
 binoculars (0.0.12-1.2) unstable; urgency=medium
 
   * Non-maintainer upload.
diff -Nru binoculars-0.0.12/debian/control binoculars-0.0.13/debian/control
--- binoculars-0.0.12/debian/control2023-02-21 13:50:46.0 +0100
+++ binoculars-0.0.13/debian/control2023-04-14 19:23:27.0 +0200
@@ -17,7 +17,6 @@
  python3-pymca5,
  python3-setuptools,
  python3-sphinx,
- python3-vtk9,
  python3-xrayutilities,
 Standards-Version: 4.6.1
 Vcs-Browser: https://salsa.debian.org/science-team/binoculars
@@ -50,7 +49,6 @@
 Section: python
 Depends:
  gir1.2-hkl-5.0,
- python3-vtk9,
  ${misc:Depends},
  ${python3:Depends},
 Suggests:
diff -Nru binoculars-0.0.12/debian/patches/numpy-1.24.patch 
binoculars-0.0.13/debian/patches/numpy-1.24.patch
--- binoculars-0.0.12/debian/patches/numpy-1.24.patch   2023-01-11 
17:48:13.0 +0100
+++ binoculars-0.0.13/debian/patches/numpy-1.24.patch   1970-01-01 
01:00:00.0 +0100
@@ -1,176 +0,0 @@
-Description: Fix test failure with Numpy 1.24.
-Author: Bas Couwenberg 
-Bug-Debian: https://bugs.debian.org/1027192
-
 a/scripts/binoviewer.py
-+++ b/scripts/binoviewer.py
-@@ -184,7 +184,7 @@ def mask_linear_defects(data, threshold=
- temp.mask = lup
- np.ma.apply_along_axis(remove_masked_slices, 1, temp, *(length,))
- 
--mask = np.zeros_like(data, dtype=np.bool)
-+mask = np.zeros_like(data, dtype=bool)
- mask[1:-1] = np.logical_or(ldown, temp.mask)
- return mask
- 
-@@ -344,7 +344,7 @@ class MaskedImageNan(MaskedImageItem):
- if inside:
- self.data[iy0:iy1, ix0:ix1] = np.ma.masked
- else:
--indexes = np.ones(self.data.shape, dtype=np.bool)
-+indexes = np.ones(self.data.shape, dtype=bool)
- indexes[iy0:iy1, ix0:ix1] = False
- self.data[indexes] = np.ma.masked
- if trace:
-@@ -369,7 +369,7 @@ class MaskedImageNan(MaskedImageItem):
- if inside:
- self.data[iy0:iy1, ix0:ix1] = np.ma.masked
- else:
--indexes = np.ones(self.data.shape, dtype=np.bool)
-+indexes = np.ones(self.data.shape, dtype=bool)
- indexes[iy0:iy1, ix0:ix1] = False
- self.data[indexes] = np.ma.masked
- if trace:
-@@ -474,7 +474,7 @@ class MaskedImageNan(MaskedImageItem):
- if inside:
- self.data.mask[iy0:iy1, ix0:ix1] = False
- else:
--indexes = np.ones(self.data.shape, dtype=np.bool)
-+indexes = np.ones(self.data.shape, dtype=bool)
- indexes[iy0:iy1, ix0:ix1] = False
- self.data.mask[indexes] = False
- if trace:
-@@ -501,7 +501,7 @@ class MaskedImageNan(MaskedImageItem):
- if inside:
- self.data.mask[iy0:iy1, ix0:ix1] = False
- else:
--indexes = np.ones(self.data.shape, dtype=np.bool)
-+indexes = np.ones(self.data.shape, 

Bug#1033600: emacs: File mode specification error: (file-missing Cannot open load file Aucun fichier ou dossier de ce type pylint)

[Picca Frédéric-Emmanuel]

Package: emacs
Version: 1:28.2+1-13
Severity: normal

Dear Maintainer,

Hello, When I edit a python file and start emacs without .emacs file like this
I get this error message in the console.

Loading /etc/emacs/site-start.d/50pylint.el (source)...done
Loading /etc/emacs/site-start.d/50pymacs.el (source)...done
Loading /etc/emacs/site-start.d/50texlive-lang-english.el (source)...done
For information about GNU Emacs and the GNU system, type C-h C-a.
File mode specification error: (file-missing Cannot open load file Aucun 
fichier ou dossier de ce type pylint)
mouse-minibuffer-check: Minibuffer window is not active
Mark set [3 times]

This is not such an issue during an interractive session, but... I use this in 
the hkl package, and it cause an FTBFS like this

make[1] : on entre dans le répertoire « 
/home/picca/src/repo.or.cz/hkl/Documentation »
env GI_TYPELIB_PATH=../hkl \
/bin/bash ../libtool --mode=execute -dlopen ../hkl/libhkl.la \
/usr/bin/emacs hkl.org --batch -q --load ./hkl-default.el -f 
org-html-export-to-html --debug-init --kill
Loading /etc/emacs/site-start.d/00debian.el (source)...
Loading /etc/emacs/site-start.d/20apel.el (source)...
Loading /etc/emacs/site-start.d/50asymptote.el (source)...
Loading /etc/emacs/site-start.d/50autoconf.el (source)...
Loading /etc/emacs/site-start.d/50devhelp.el (source)...
Loading /etc/emacs/site-start.d/50dictionaries-common.el (source)...
Loading debian-ispell (native compiled elisp)...
Loading /var/cache/dictionaries-common/emacsen-ispell-default.el (source)...
Loading /var/cache/dictionaries-common/emacsen-ispell-dicts.el (source)...
Loading /etc/emacs/site-start.d/50emacs-goodies-el.el (source)...
Package emacs-goodies-el removed but not purged.  Skipping setup.
Loading /etc/emacs/site-start.d/50gtk-doc-tools.el (source)...
Loading /etc/emacs/site-start.d/50haskell-mode.el (source)...
Loading 
/usr/share/emacs/site-lisp/elpa/haskell-mode-17.2snapshot/haskell-mode-autoloads.el
 (source)...
Loading /etc/emacs/site-start.d/50latex-cjk-common.el (source)...
Loading /usr/share/emacs/site-lisp/latex-cjk-common/cjk-enc.el (source)...
Loading /etc/emacs/site-start.d/50latex-cjk-thai.el (source)...
Loading /etc/emacs/site-start.d/50latexmk.el (source)...
Loading /etc/emacs/site-start.d/50lilypond-data.el (source)...
Loading /etc/emacs/site-start.d/50mu4e.el (source)...
Loading /etc/emacs/site-start.d/50pylint.el (source)...
Loading /etc/emacs/site-start.d/50pymacs.el (source)...
Loading /etc/emacs/site-start.d/50texlive-lang-english.el (source)...
executing Python code block...
Can’t guess python-indent-offset, using defaults: 4
Debugger entered--Lisp error: (file-missing "Cannot open load file" "Aucun 
fichier ou dossier de ce type" "pylint")
  pylint-add-key-bindings()
  run-hooks(change-major-mode-after-body-hook prog-mode-hook python-mode-hook)
  apply(run-hooks (change-major-mode-after-body-hook prog-mode-hook 
python-mode-hook))
  run-mode-hooks(python-mode-hook)
  python-mode()
  org-babel-python--shift-right("from gi.repository import Hkl\n\ndef 
bold(l):\nre...")
  org-babel-python-evaluate-external-process("from gi.repository import 
Hkl\n\ndef bold(l):\nre..." value ("raw" "value" "replace") nil)
  org-babel-python-evaluate(nil "from gi.repository import Hkl\n\ndef 
bold(l):\nre..." value ("raw" "value" "replace") nil nil)
  org-babel-execute:python("from gi.repository import Hkl\n\ndef bold(l):\n
re..." ((:colname-names) (:rowname-names) (:result-params "raw" "value" 
"replace") (:result-type . value) (:results . "raw value replace") (:exports . 
"results") (:cache . "no") (:hlines . "no") (:noweb . "no") (:session . "none") 
(:tangle . "no")))
  org-babel-execute-src-block(nil ("python" "from gi.repository import 
Hkl\n\ndef bold(l):\nre..." ((:colname-names) (:rowname-names) 
(:result-params "replace" "value" "raw") (:result-type . value) (:results . 
"replace value raw") (:exports . "results") (:tangle . "no") (:session . 
"none") (:noweb . "no") (:hlines . "no") (:cache . "no")) "" nil 16691 
"(ref:%s)"))
  org-babel-exp-results(("python" "from gi.repository import Hkl\n\ndef 
bold(l):\nre..." ((:cache . "no") (:colname-names) (:exports . "results") 
(:hlines . "no") (:noweb . "no") (:result-params "replace" "value" "raw") 
(:result-type . value) (:results . "replace value raw") (:rowname-names) 
(:session . "none") (:tangle . "no")) "" nil 16691 "(ref:%s)") block nil 
"c5e8d8dd74aadb2dbc5bed5e85740a69d84c7b38")
  org-babel-exp-do-export(("python" "from gi.repository import Hkl\n\ndef 
bold(l):\nre..." ((:cache . "no") (:colname-names) (:exports . "results") 
(:hlines . "no") (:noweb . "no") (:result-params "replace" "value" "raw") 
(:result-type . value) (:results . "replace value raw") (:rowname-names) 
(:session . "none") (:tangle . "no")) "" nil 16691 "(ref:%s)") block 
"c5e8d8dd74aadb2dbc5bed5e85740a69d84c7b38")
  org-babel-exp-src-block()
  org-babel-exp-process-buffer()
  org-export-as(html nil nil nil (:output-fi

Bug#1025049: asymptote: Error in shipout3

[Picca Frédéric-Emmanuel]

Package: asymptote
Version: 2.83+ds-1+b1
Followup-For: Bug #1025049
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

Here the backtrace generated after the crash, it seems that there is an 
Arithmetic Exception.

the gl parameter at line 23 seems strange

#23 0x5591db410072 in gl::glrender (prefix="", pic=0x2, format=, 
width=5.3049894774131808e-315, height=0, angle=2.3978552443441112e-312, 
zoom=5.3982412455708344e-315, m=..., M=..., shift=..., margin=...,
t=0x7ffc641f9990, background=0x5591db748b90, nlightsin=3, 
lights=0x7f31c6fb10e8, diffuse=0x7f31c6fb1070, specular=0x7f31c6fb1000, 
view=false, oldpid=0) at ./glrender.cc:2207

here the full stack

Core was generated by `/usr/bin/asy -config  -d -render=4 -f png -o 3S+1D.png 
3S+1D.asy'.
Program terminated with signal SIGFPE, Arithmetic exception.
#0  0x7f31c46d42b2 in fs_reg_alloc::set_spill_costs 
(this=this@entry=0x7ffc641f7f20) at 
../src/intel/compiler/brw_fs_reg_allocate.cpp:1077
Download failed: Argument invalide.  Continuing without source file 
./build/../src/intel/compiler/brw_fs_reg_allocate.cpp.
1077../src/intel/compiler/brw_fs_reg_allocate.cpp: Aucun fichier ou dossier 
de ce type.
[Current thread is 1 (Thread 0x7f31ca49de40 (LWP 39687))]
(gdb) bt
#0  0x7f31c46d42b2 in fs_reg_alloc::set_spill_costs 
(this=this@entry=0x7ffc641f7f20) at 
../src/intel/compiler/brw_fs_reg_allocate.cpp:1077
#1  0x7f31c46d6f14 in fs_reg_alloc::choose_spill_reg (this=0x7ffc641f7f20) 
at ../src/intel/compiler/brw_fs_reg_allocate.cpp:1088
#2  fs_reg_alloc::assign_regs (this=this@entry=0x7ffc641f7f20, 
allow_spilling=allow_spilling@entry=true, spill_all=spill_all@entry=false) at 
../src/intel/compiler/brw_fs_reg_allocate.cpp:1331
#3  0x7f31c46d725b in fs_visitor::assign_regs 
(this=this@entry=0x5591dc668370, allow_spilling=allow_spilling@entry=true, 
spill_all=spill_all@entry=false) at 
../src/intel/compiler/brw_fs_reg_allocate.cpp:1381
#4  0x7f31c469c890 in fs_visitor::allocate_registers (this=0x5591dc668370, 
allow_spilling=true) at ../src/intel/compiler/brw_fs.cpp:6493
#5  0x7f31c46a1d13 in fs_visitor::run_cs (this=0x5591dc668370, 
allow_spilling=) at ../src/intel/compiler/brw_fs.cpp:6942
#6  0x7f31c46a2057 in brw_compile_cs 
(compiler=compiler@entry=0x5591db7fa830, mem_ctx=mem_ctx@entry=0x5591dd0ffc30, 
params=params@entry=0x7ffc641f8270) at ../src/intel/compiler/brw_fs.cpp:7748
#7  0x7f31c4820bb4 in crocus_compile_cs (ice=ice@entry=0x5591db767a30, 
ish=ish@entry=0x5591dbf17620, key=key@entry=0x7ffc641f83a0) at 
../src/gallium/drivers/crocus/crocus_program.c:2573
#8  0x7f31c4820f7b in crocus_create_compute_state (ctx=0x5591db767a30, 
state=) at ../src/gallium/drivers/crocus/crocus_program.c:2936
#9  0x7f31c3982dea in st_create_nir_shader (st=st@entry=0x5591db83cc40, 
state=state@entry=0x7ffc641f85e0) at ../src/mesa/state_tracker/st_program.c:559
#10 0x7f31c398319d in st_create_common_variant (st=st@entry=0x5591db83cc40, 
prog=prog@entry=0x5591dbf3e890, key=key@entry=0x7ffc641f8980) at 
../src/mesa/state_tracker/st_program.c:754
#11 0x7f31c3983a94 in st_get_common_variant (st=st@entry=0x5591db83cc40, 
prog=prog@entry=0x5591dbf3e890, key=key@entry=0x7ffc641f8980) at 
../src/mesa/state_tracker/st_program.c:807
#12 0x7f31c3984082 in st_precompile_shader_variant (prog=0x5591dbf3e890, 
st=0x5591db83cc40) at ../src/mesa/state_tracker/st_program.c:1273
#13 st_finalize_program (st=0x5591db83cc40, prog=0x5591dbf3e890) at 
../src/mesa/state_tracker/st_program.c:1334
#14 0x7f31c3b40399 in st_link_nir (ctx=0x7f31bc589010, 
shader_program=) at 
../src/mesa/state_tracker/st_glsl_to_nir.cpp:940
#15 0x7f31c3b3d4e5 in link_shader (prog=, 
ctx=0x7f31bc589010) at ../src/mesa/state_tracker/st_glsl_to_ir.cpp:97
#16 st_link_shader (ctx=0x7f31bc589010, prog=) at 
../src/mesa/state_tracker/st_glsl_to_ir.cpp:112
#17 0x7f31c3b2bb5c in _mesa_glsl_link_shader (ctx=ctx@entry=0x7f31bc589010, 
prog=prog@entry=0x5591dbf3e1a0) at ../src/mesa/program/link_program.cpp:91
#18 0x7f31c3b032bb in link_program (no_error=, 
shProg=, ctx=) at 
../src/mesa/main/shaderapi.c:1332
#19 link_program_error (ctx=0x7f31bc589010, shProg=0x5591dbf3e1a0) at 
../src/mesa/main/shaderapi.c:1443
#20 0x5591db4139e1 in compileAndLinkShader (shaders=std::vector of length 
1622480, capacity 1958168 = {...}, defineflags=, ssbo=false, interlock=144, compute=65) at 
./shaders.cc:40
#21 0x5591db40a698 in gl::initComputeShaders () at ./glrender.cc:575
#22 0x5591db40c33f in gl::initShaders () at ./glrender.cc:640
#23 0x5591db410072 in gl::glrender (prefix="", pic=0x2, format=, 
width=5.3049894774131808e-315, height=0, angle=2.3978552443441112e-312, 
zoom=5.3982412455708344e-315, m=..., M=..., shift=..., margin=...,
t=0x7ffc641f9990, background=0x5591db748b90, nlightsin=3, 
lights=0x7f31c6fb10e8, diffuse=0x7f31c6fb1070, specular=0x7f31c6fb1000, 
view=false, oldpid=0) at ./glrender.cc:2207
#24 0x5591db160a6f in camp::picture::shi

Bug#1025049: /usr/bin/asy: Re: asymptote: Error in shipout3

[Picca Frédéric-Emmanuel]

Package: asymptote
Version: 2.83+ds-1+b1
Followup-For: Bug #1025049
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

I can reproduce this bug with my sway environement. But If I use a computer 
withe Debian/sid and grome it works. I am wondering if this is not an issue 
between wayland and xorg...

-- System Information:
Debian Release: bookworm/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.0.0-4-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages asymptote depends on:
ii  ghostscript  10.0.0~dfsg-9+b1
ii  imagemagick  8:6.9.11.60+dfsg-1.4+b1
ii  imagemagick-6.q16 [imagemagick]  8:6.9.11.60+dfsg-1.4+b1
ii  libboost-filesystem1.74.01.74.0-18.1
ii  libc62.36-8
ii  libcurl3-gnutls  7.87.0-2
ii  libfftw3-double3 3.3.10-1
ii  libgc1   1:8.2.2-3
ii  libgcc-s112.2.0-14
ii  libgl1   1.6.0-1
ii  libglew2.2   2.2.0-4+b1
ii  libglut3.12  3.4.0-1
ii  libglx0  1.6.0-1
ii  libgsl27 2.7.1+dfsg-3+b1
ii  libreadline8 8.2-1.3
ii  libsigsegv2  2.14-1
ii  libstdc++6   12.2.0-14
ii  libtinfo66.4-1
ii  libtirpc31.3.3+ds-1
ii  python3  3.11.1-1
ii  tex-common   6.18
ii  texlive-binaries 2022.20220321.62855-5
ii  texlive-latex-base   2022.20221123-1
ii  texlive-plain-generic2022.20221123-2
ii  texlive-pstricks 2022.20221123-2
ii  xdg-utils1.1.3-4.1
ii  zlib1g   1:1.2.13.dfsg-1

Versions of packages asymptote recommends:
ii  asymptote-doc  2.83+ds-1

Versions of packages asymptote suggests:
pn  asymptote-x11  

-- no debconf information

Bug#1025667: RM: facet-analyser [i386] -- ROM; Depends on libinsighttoolkit5-dev which is not available on 32bit arch

[Picca Frédéric-Emmanuel]

Package: ftp.debian.org
Severity: normal
User: ftp.debian@packages.debian.org
Usertags: remove
X-Debbugs-Cc: facet-analy...@packages.debian.org, pi...@debian.org
Control: affects -1 + src:facet-analyser

Bug#1025049: asymptote: Error in shipout3

[Picca Frédéric-Emmanuel]

Package: asymptote
Version: 2.83+ds-1+b1
Severity: normal
X-Debbugs-Cc: pi...@debian.org

Dear Maintainer,

while working on the hkl package I found that asy doe snot compile anymore my 
files.

/usr/bin/asy -config "" -d -render=4 -f png -o 3S+1D.png 3S+1D.asy
shipout3(prefix,f,preview ? nativeformat() : format,
^
/usr/share/asymptote/three.asy: 2896.13: runtime: /usr/bin/asy -config "" -d 
-render=4 -f png -o B_b3_y.png B_b3_y.asy
shipout3(prefix,f,preview ? nativeformat() : format,
^
/usr/share/asymptote/three.asy: 2896.13: runtime: /usr/bin/asy -config "" -d 
-render=4 -f png -o B_a.png B_a.asy
shipout3(prefix,f,preview ? nativeformat() : format,
^
/usr/share/asymptote/three.asy: 2896.13: runtime: /usr/bin/asy -config "" -d 
-render=4 -f png -o B_b.png B_b.asy
shipout3(prefix,f,preview ? nativeformat() : format,
^
...

on bullseye, I do not have this issue.

So I attached a file in order to reproduce this error.

Cheers

Frédéric

-- System Information:
Debian Release: bookworm/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.0.0-4-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages asymptote depends on:
ii  ghostscript  10.0.0~dfsg-7
ii  imagemagick  8:6.9.11.60+dfsg-1.3+b4
ii  imagemagick-6.q16 [imagemagick]  8:6.9.11.60+dfsg-1.3+b4
ii  libboost-filesystem1.74.01.74.0-17+b2
ii  libc62.36-6
ii  libcurl3-gnutls  7.86.0-2
ii  libfftw3-double3 3.3.8-2
ii  libgc1   1:8.2.2-3
ii  libgcc-s112.2.0-9
ii  libgl1   1.5.0-1
ii  libglew2.2   2.2.0-4+b1
ii  libglut3.12  3.4.0-1
ii  libglx0  1.5.0-1
ii  libgsl27 2.7.1+dfsg-3+b1
ii  libreadline8 8.2-1.2
ii  libsigsegv2  2.14-1
ii  libstdc++6   12.2.0-9
ii  libtinfo66.3+20220423-2
ii  libtirpc31.3.3+ds-1
ii  python3  3.10.6-3
ii  tex-common   6.18
ii  texlive-binaries 2022.20220321.62855-4+b1
ii  texlive-latex-base   2022.20221123-1
ii  texlive-plain-generic2022.20221123-1
ii  texlive-pstricks 2022.20221123-1
ii  xdg-utils1.1.3-4.1
ii  zlib1g   1:1.2.13.dfsg-1

Versions of packages asymptote recommends:
ii  asymptote-doc  2.83+ds-1

Versions of packages asymptote suggests:
pn  asymptote-x11  

-- no debconf information
import three;

currentprojection=orthographic(1,0,0);
currentlight=White;

size(6cm);

triple b1 = (1, 0, 0);
triple b2 = (.31, .95, 0);
triple b3 = (.4, .5, 0.76);

triple a1 = cross(b2, b3);
triple a2 = cross(b3, b1);
triple a3 = cross(b1, b2);

// orthonormal coordinates
draw(Label("$\vec{x}$", 1, S), O--(2*X), gray, Arrow3());
draw(Label("$\vec{y}$", 1), O--(2*Y), gray, Arrow3());
draw(Label("$\vec{z}$", 1), O--(2*Z), gray, Arrow3());

// real space
draw(Label("$\vec{b_1}$", 1, E), O--b1, blue, Arrow3());
draw(Label("$\vec{b_2}$", 1), O--b2, red, Arrow3());
draw(Label("$\vec{b_3}$", 1), O--b3, green, Arrow3());

// reciprocal space
draw(Label("$\vec{a_1}$", 1), O--a1, cyan, Arrow3());
draw(Label("$\vec{b_2}$", 1), O--a2, magenta, Arrow3());
draw(Label("$\vec{c_3}$", 1), O--a3, yellow, Arrow3());

Bug#1023260: sightviewer: Instruction non permise (core dumped)

[Picca Frédéric-Emmanuel]

Package: sightviewer
Version: 21.1.1-2
Severity: important

Dear Maintainer,

while trying to start this software, I got a

Instruction non permise (core dumped)

the backtrace (not that usefull but at least it shows that the probleme is in 
the libsight_core library

(gdb) bt
#0  0x77c8da6e in ?? () from /lib/x86_64-linux-gnu/libsight_core.so.21.1
#1  0x77fcdcee in call_init (env=0x7fffdba8, argv=0x7fffdb98, 
argc=1, l=) at ./elf/dl-init.c:70
#2  call_init (l=, argc=1, argv=0x7fffdb98, 
env=0x7fffdba8) at ./elf/dl-init.c:26
#3  0x77fcddd4 in _dl_init (main_map=0x77ffe2c0, argc=1, 
argv=0x7fffdb98, env=0x7fffdba8) at ./elf/dl-init.c:117
#4  0x77fe498a in _dl_start_user () from /lib64/ld-linux-x86-64.so.2
#5  0x0001 in ?? ()
#6  0x7fffdf9d in ?? ()
#7  0x in ?? ()


my CPU

$ lscpu
Architecture :  x86_64
  Mode(s) opératoire(s) des processeurs :   32-bit, 64-bit
  Tailles des adresses: 36 bits physical, 48 bits virtual
  Boutisme :Little Endian
Processeur(s) : 2
  Liste de processeur(s) en ligne : 0,1
Identifiant constructeur :  GenuineIntel
  Nom de modèle :   Intel(R) Core(TM)2 Duo CPU 
T9900  @ 3.06GHz
Famille de processeur : 6
Modèle :23
Thread(s) par cœur :1
Cœur(s) par socket :2
Socket(s) : 1
Révision :  10
multiplication des MHz du/des CPU(s) :  52%
Vitesse maximale du processeur en MHz : 3059,
Vitesse minimale du processeur en MHz : 1596,
BogoMIPS :  6103,21
Drapeaux :  fpu vme de pse tsc msr pae mce cx8 
apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ht tm p
be syscall nx lm constant_tsc 
arch_perfmon pebs bts rep_good nopl cpuid aperfmperf pni dtes64 monitor ds_cpl 
vmx s
mx est tm2 ssse3 cx16 xtpr pdcm 
sse4_1 xsave lahf_lm pti tpr_shadow vnmi flexpriority vpid dtherm
Fonctionnalités de virtualisation : 
  Virtualisation :  VT-x
Caches (somme de toutes) :  
  L1d : 64 KiB (2 instances)
  L1i : 64 KiB (2 instances)
  L2 :  6 MiB (1 instance)
NUMA :  
  Nœud(s) NUMA :1
  Nœud NUMA 0 de processeur(s) :0,1
Vulnérabilités :
  Itlb multihit :   KVM: Mitigation: VMX disabled
  L1tf :Mitigation; PTE Inversion; VMX EPT 
disabled
  Mds : Vulnerable: Clear CPU buffers 
attempted, no microcode; SMT disabled
  Meltdown :Mitigation; PTI
  Mmio stale data : Unknown: No mitigations
  Retbleed :Not affected
  Spec store bypass :   Vulnerable
  Spectre v1 :  Mitigation; usercopy/swapgs 
barriers and __user pointer sanitization
  Spectre v2 :  Mitigation; Retpolines, STIBP 
disabled, RSB filling, PBRSB-eIBRS Not affected
  Srbds :   Not affected
  Tsx async abort : Not affected


-- System Information:
Debian Release: bookworm/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.0.0-2-amd64 (SMP w/2 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages sightviewer depends on:
ii  libsight  21.1.1-2

sightviewer recommends no packages.

sightviewer suggests no packages.

-- no debconf information

Bug#1022108: RM: cctbx [armel armhf i386] -- ROM; no upstream support for 32bit arch

[Picca Frédéric-Emmanuel]

Package: ftp.debian.org
Severity: normal


Hello, this package compile on 32bit arch but the unit test doesn not pass on 
these architecture. After a discussion with the upstream it is clear that no 
support at all will be provided. This is why I request the removal. On these 
architectures I now 'break' the build process in order to avoid package 
production.

thanks for considering

Frederci

Bug#1021930: RM: guiqwt [armel ppc64el s390x] -- ROM; depends on pyqt5webengine which does not build on a bunch of arch

[Picca Frédéric-Emmanuel]

Package: ftp.debian.org
Severity: normal


In order to let guiqwt migrate into testing, it should be removed from the 
requested arch.
The new qt5webengine does not build on these qrchitecture.

thanks for considering.


Fred

Bug#1016839: /usr/lib/noweb/numarkup: not found

[Picca Frédéric-Emmanuel]

Source: noweb
Version: 2.12-1
Severity: important
X-Debbugs-Cc: pi...@debian.org

Hello,

I try to update the package cbflib. This package contain a nuweb file.
Since nuweb is not available, I try to use noweb, but it ends up with this error

$ nuweb2noweb pycbf.w 
/usr/bin/nuweb2noweb: 7: /usr/lib/noweb/numarkup: not found


to my opinion you forgot to install the lib pqrt of noweb

Cheers

Fred



-- System Information:
Debian Release: bookworm/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 5.18.0-3-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#1016023: pypi2deb : does not deal with proxy

[Picca Frédéric-Emmanuel]

Package: pypi2deb
Version: 3.20220721
Severity: normal
X-Debbugs-Cc: pi...@debian.org

Hello, In my institut there is https_proxy and 

py2dsp doesn not work behind there proxy. It seems that aihttp must be 
configure to use the system proxy.

https://docs.aiohttp.org/en/stable/client_advanced.html?highlight=proxy#proxy-support

Contrary to the requests library, it won’t read environment variables by 
default. But you can do so by passing trust_env=True into aiohttp.ClientSession 
constructor for extracting proxy configuration from HTTP_PROXY, HTTPS_PROXY, 
WS_PROXY or WSS_PROXY environment variables (all are case insensitive):

So can you set trust_env=True in the CLientSession instance

thanks for considering

Frederic


-- System Information:
Debian Release: bookworm/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 5.18.0-2-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages pypi2deb depends on:
ii  build-essential  12.9
ii  devscripts   2.22.2
ii  dh-python5.20220403
ii  python3  3.10.5-3
ii  python3-aiohttp  3.8.1-4+b1
ii  python3-debian   0.1.46
ii  python3-github   1.55-2
ii  python3-jinja2   3.0.3-1
ii  python3-redis4.3.4-3

Versions of packages pypi2deb recommends:
ii  python3-msgpack  1.0.3-1+b1

Versions of packages pypi2deb suggests:
pn  cython  
ii  cython3 0.29.30-1+b1
pn  pypy
pn  python-all-dev  
pn  python-nose 
pn  python-pytest   
ii  python-setuptools   44.1.1-1.2
ii  python3-all-dev 3.10.5-3
ii  python3-nose1.3.7-8
ii  python3-pytest  7.1.2-2
ii  python3-setuptools  59.6.0-1.2
ii  python3-sphinx  4.5.0-4

-- no debconf information

Bug#996484: Doesn not starts

[Picca Frédéric-Emmanuel]

Package: pushover
Version: 0.0.5+git20180909-4+b2
Severity: important
X-Debbugs-Cc: pi...@debian.org

Hello, while trying to play with pushover, I got this message

$ pushover 
Using portable datadir: ./data
File not found: ./data/pushover/images/dominoes.png
File not found: ./data/pushover/images/ant.png
File not found: ./data/pushover/images/box.png
 oops box image hasn't the right dimensions
found font /usr/share/fonts/truetype/freefont/FreeSans.ttf
Can't load sound from file: ./data/pushover/sounds/01_StandardFalling.ogg
Can't load sound from file: ./data/pushover/sounds/02_StopperHit.ogg
Can't load sound from file: ./data/pushover/sounds/03_Splitter.ogg
Can't load sound from file: ./data/pushover/sounds/04_Exploder.ogg
Can't load sound from file: ./data/pushover/sounds/05_Delay.ogg
Can't load sound from file: ./data/pushover/sounds/06_TumblerFalling.ogg
Can't load sound from file: ./data/pushover/sounds/07_BridgerFalling.ogg
Can't load sound from file: ./data/pushover/sounds/06_TumblerFalling.ogg
Can't load sound from file: ./data/pushover/sounds/09_TriggerFalling.ogg
Can't load sound from file: ./data/pushover/sounds/0A_Ascender.ogg
Can't load sound from file: ./data/pushover/sounds/0B_Falling.ogg
Can't load sound from file: ./data/pushover/sounds/0C_Landing.ogg
Can't load sound from file: ./data/pushover/sounds/0D_PickUpDomino.ogg
Can't load sound from file: ./data/pushover/sounds/0E_Tapping.ogg
Can't load sound from file: ./data/pushover/sounds/0F_Schrugging.ogg
Can't load sound from file: ./data/pushover/sounds/10_DoorClose.ogg
Can't load sound from file: ./data/pushover/sounds/11_DoorOpen.ogg
Can't load sound from file: ./data/pushover/sounds/13_Victory.ogg
terminate called after throwing an instance of 'std::runtime_error'
  what():  Can't open directory: ./data/pushover/levels
Abandon

Cheers

Fred


-- System Information:
Debian Release: bookworm/sid
  APT prefers oldstable-proposed-updates-debug
  APT policy: (500, 'oldstable-proposed-updates-debug'), (500, 
'oldstable-debug'), (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.14.0-2-amd64 (SMP w/4 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages pushover depends on:
ii  fonts-freefont-ttf 20120503-10
ii  libboost-filesystem1.74.0  1.74.0-11
ii  libc6  2.32-4
ii  libfribidi01.0.8-2
ii  libgcc-s1  11.2.0-9
ii  liblua5.3-05.3.6-1
ii  libpng16-161.6.37-3
ii  libsdl-mixer1.21.2.12-16+b1
ii  libsdl-ttf2.0-02.0.11-6
ii  libsdl1.2debian1.2.15+dfsg2-6
ii  libstdc++6 11.2.0-9
ii  zlib1g 1:1.2.11.dfsg-2

Versions of packages pushover recommends:
ii  pushover-data  0.0.5+git20180909-4

pushover suggests no packages.

-- no debconf information

Bug#991238: vtkPVWebExporter.cxx:63 WARN| Failed to import paraview.web.vtkjs_helper module.

[Picca Frédéric-Emmanuel]

Package: paraview
Version: 5.9.0-2
Severity: normal
X-Debbugs-Cc: pi...@debian.org

Hello,

I am working on a paraview plugin, https://github.com/picca/FacetAnalyser
But when I run the test suit, I get this error message

1: (   8.114s) [paraview]   vtkPVWebExporter.cxx:63WARN| Failed to 
import paraview.web.vtkjs_helper module.
1: ModuleNotFoundError: No module named 'paraview.web'
1: Export failed

So it seem that the web module is missing.

I can find the source of this module in the paraview sources.

Web/Python/CMakeLists.txt:  paraview/web/vtkjs_helper.py

So would you considere activating this modules for the next upload of paraview.

thanks for considering

Frederic



-- System Information:
Debian Release: 11.0
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.10.0-7-amd64 (SMP w/4 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages paraview depends on:
ii  libavcodec58   7:4.3.2-0+deb11u2
ii  libavformat58  7:4.3.2-0+deb11u2
ii  libavutil567:4.3.2-0+deb11u2
ii  libc6  2.31-13
ii  libdouble-conversion3  3.1.5-6.1
ii  libexpat1  2.2.10-2
ii  libfreetype6   2.10.4+dfsg-1
ii  libgcc-s1  10.2.1-6
ii  libgdal28  3.2.2+dfsg-2
ii  libgl2ps1.41.4.2+dfsg1-1
ii  libglew2.1 2.1.0-4+b1
ii  libglx01.3.2-1
ii  libhdf5-103-1  1.10.6+repack-4
ii  libjpeg62-turbo1:2.0.6-4
ii  liblz4-1   1.9.3-2
ii  liblzma5   5.2.5-2
ii  libnetcdf181:4.7.4-1
ii  libopengl0 1.3.2-1
ii  libopenmpi34.1.0-10
ii  libpdal-base12 2.2.0+ds-1+b1
ii  libpng16-161.6.37-3
ii  libpython3.9   3.9.2-1
ii  libqt5core5a   5.15.2+dfsg-9
ii  libqt5gui5 5.15.2+dfsg-9
ii  libqt5help55.15.2-5
ii  libqt5network5 5.15.2+dfsg-9
ii  libqt5widgets5 5.15.2+dfsg-9
ii  libstdc++6 10.2.1-6
ii  libswscale57:4.3.2-0+deb11u2
ii  libtiff5   4.2.0-1
ii  libx11-6   2:1.7.1-1
ii  libxcursor11:1.2.0-2
ii  libxml22.9.10+dfsg-6.7
ii  python3-autobahn   17.10.1+dfsg1-7
ii  python3-matplotlib 3.3.4-1
ii  python3-mpi4py 3.0.3-8
ii  python3-six1.16.0-1
ii  python3-twisted20.3.0-7
ii  tcl [tclsh]8.6.11+1
ii  zlib1g 1:1.2.11.dfsg-2

Versions of packages paraview recommends:
ii  mpi-default-bin  1.13
ii  paraview-doc 5.9.0-2
ii  python3-paraview [python3-paraview]  5.9.0-2

Versions of packages paraview suggests:
pn  h5utils 
ii  hdf5-tools  1.10.6+repack-4

-- no debconf information

Bug#989927: warning: keyword ‘export’ not implemented, and will be ignored

[Picca Frédéric-Emmanuel]

Package: libinsighttoolkit4-dev
Version: 4.13.3withdata-dfsg1-4.1
Severity: normal
X-Debbugs-Cc: pi...@debian.org

Hello, I am building a paraview plugin  and during the compilation, I can see 
this:

[ 77%] Building CXX object code/CMakeFiles/FacetAnalyser.dir/FacetAnalyser.cxx.o
cd "/<>/obj-x86_64-linux-gnu/code" && /usr/lib/ccache/c++ 
-DFacetAnalyser_EXPORTS -DITK_IO_FACTORY_REGISTER_MANAGER 
-I"/<>/obj-x86_64-linux-gnu/ITKFactoryRegistration" 
-I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 
-I/usr/include/ITK-4.13 -I"/<>/code" 
-I"/<>/obj-x86_64-linux-gnu/code" 
-I"/<>/obj-x86_64-linux-gnu/code/CMakeFiles/FacetAnalyser_server_manager"
 -isystem /usr/include/paraview-5.9 -g -O2 -ffile-prefix-map=/<>=. 
-fstack-protector-strong -Wformat -Werror=format-security 
-I/<>/debian/third-party/VtkGlue/include/ -Wdate-time 
-D_FORTIFY_SOURCE=2  -fPIC -pthread -o 
CMakeFiles/FacetAnalyser.dir/FacetAnalyser.cxx.o -c 
"/<>/code/FacetAnalyser.cxx"
In file included from /usr/include/ITK-4.13/vcl_limits.h:5,
 from /usr/include/ITK-4.13/itkNumericTraits.h:51,
 from /usr/include/ITK-4.13/itkConceptChecking.h:32,
 from /usr/include/ITK-4.13/itkAtomicIntDetail.h:39,
 from /usr/include/ITK-4.13/itkAtomicInt.h:38,
 from /usr/include/ITK-4.13/itkTimeStamp.h:33,
 from /usr/include/ITK-4.13/itkLightObject.h:23,
 from /usr/include/ITK-4.13/itkObject.h:31,
 from /usr/include/ITK-4.13/itkCommand.h:21,
 from /<>/code/FacetAnalyser.cxx:31:
/usr/include/ITK-4.13/vcl_compiler.h:114:30: warning: keyword ‘export’ not 
implemented, and will be ignored
  114 | # define VCL_TEMPLATE_EXPORT export
  |  ^~
/usr/include/ITK-4.13/vnl/vnl_c_vector.h:40:1: note: in expansion of macro 
‘VCL_TEMPLATE_EXPORT’
   40 | VCL_TEMPLATE_EXPORT template 
  | ^~~

I just wanted to report this :)

thanks

Frederic



-- System Information:
Debian Release: 11.0
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.10.0-7-amd64 (SMP w/4 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages libinsighttoolkit4-dev depends on:
ii  libc6 2.31-12
ii  libdcmtk-dev  3.6.5-1
ii  libdouble-conversion-dev  3.1.5-6.1
ii  libexpat1-dev [libexpat-dev]  2.2.10-2
ii  libgcc-s1 10.2.1-6
ii  libgdcm-dev   3.0.8-1
ii  libhdf5-dev   1.10.6+repack-3
ii  libinsighttoolkit4.13 4.13.3withdata-dfsg1-4.1
ii  libminc-dev   2.4.03-3
ii  libnifti-dev  3.0.1-8
ii  libnifti2-dev [libnifti-dev]  3.0.1-8
ii  libstdc++610.2.1-6

Versions of packages libinsighttoolkit4-dev recommends:
ii  libfftw3-dev  3.3.8-2
ii  uuid-dev  2.36.1-7

Versions of packages libinsighttoolkit4-dev suggests:
pn  insighttoolkit4-examples  

-- no debconf information

Bug#989398: can not find itkVTKImageToImageFilter.h

[Picca Frédéric-Emmanuel]

Package: libinsighttoolkit4-dev
Version: 4.13.3withdata-dfsg1-4.1
Severity: important
X-Debbugs-Cc: pi...@debian.org

Hello, I am building a paraview extension but it ends up with this error

 CMakeFiles/FacetAnalyserTest.dir/FacetAnalyser.cxx.o -c 
"/<>/code/FacetAnalyser.cxx"
/<>/code/FacetAnalyser.cxx:33:10: fatal error: 
itkVTKImageToImageFilter.h: No such file or directory
   33 | #include 
  |  ^~~~


it seems that you did not provide these headers in the -dev package of the 4.x 
version.
This file was available in the 3.x version of itk.

Could you considere re-adding the Bridge modules

thanks

Frederic



-- System Information:
Debian Release: 11.0
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.10.0-7-amd64 (SMP w/4 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages libinsighttoolkit4-dev depends on:
ii  libc6 2.31-12
ii  libdcmtk-dev  3.6.5-1
ii  libdouble-conversion-dev  3.1.5-6.1
ii  libexpat1-dev [libexpat-dev]  2.2.10-2
ii  libgcc-s1 10.2.1-6
ii  libgdcm-dev   3.0.8-1
ii  libhdf5-dev   1.10.6+repack-2
ii  libinsighttoolkit4.13 4.13.3withdata-dfsg1-4.1
ii  libminc-dev   2.4.03-3
ii  libnifti-dev  3.0.1-8
ii  libnifti2-dev [libnifti-dev]  3.0.1-8
ii  libstdc++610.2.1-6

Versions of packages libinsighttoolkit4-dev recommends:
pn  libfftw3-dev  
ii  uuid-dev  2.36.1-7

Versions of packages libinsighttoolkit4-dev suggests:
pn  insighttoolkit4-examples  

-- no debconf information

Bug#989296: missing dependencies and wrong path in the .cmake file

[Picca Frédéric-Emmanuel]

Package: libvtkgdcm-dev
Severity: important
X-Debbugs-Cc: pi...@debian.org


Hello,

I try to build a package but it end up with this error message

-- The imported target "vtkgdcm" references the file
   "/usr/lib/x86_64-linux-gnu/libvtkgdcm.so.3.0.8"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "vtkgdcmsharpglue" references the file
   "/usr/lib/x86_64-linux-gnu/libvtkgdcmsharpglue.so"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "vtkgdcmJava" references the file
   "/usr/lib/x86_64-linux-gnu/jni/libvtkgdcmJava.so"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "vtkgdcmPython" references the file
   "/usr/lib/python/dist-packages/vtkgdcmPython.so"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "vtkgdcmPythonD" references the file
   "/usr/lib/x86_64-linux-gnu/libvtkgdcmPythonD.so.3.0.8"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmdump" references the file
   "/usr/bin/gdcmdump"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmdiff" references the file
   "/usr/bin/gdcmdiff"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmraw" references the file
   "/usr/bin/gdcmraw"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmscanner" references the file
   "/usr/bin/gdcmscanner"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmanon" references the file
   "/usr/bin/gdcmanon"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmgendir" references the file
   "/usr/bin/gdcmgendir"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake"
but not all the files it references.

-- The imported target "gdcmimg" references the file
   "/usr/bin/gdcmimg"
but this file does not exist.  Possible reasons include:
* Th

Bug#986816: unblock: binoculars/0.0.5-1

[Picca Frédéric-Emmanuel]

Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock

Please unblock package binoculars

It solves 3 important bugs, the later one is very important since it let the 
package completly unusable without the proposed fixes.

923859, 924024 , 986785 

Since I am also the upstream of the software, I can affirm that it is better to 
have this version in Debian than the current 0.0.4 version.
the user of our facilities expect to have a working version of binoculars 
available, and the 0.0.4 is not.

there is very little risk to accept the 0.0.5 version, which was tested in our 
facility on buster and bullseye ewith real data's

this is a leaf package so very few issue are expected due to this new upstream 
version.

thanks for considering

unblock binoculars/0.0.5-1

-- System Information:
Debian Release: 10.9
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.19.0-14-amd64 (SMP w/24 CPU cores)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_WARN, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8), 
LANGUAGE=en_GB.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#986785: binoculars gui does not work

[Picca Frédéric-Emmanuel]

Package: binoculars
Version: 0.0.4-2
Severity: important

Dear Maintainer,

When trying to import a datasapce I get this error message.

$ binoculars-gui 
Warning: Ignoring XDG_SESSION_TYPE=wayland on Gnome. Use 
QT_QPA_PLATFORM=wayland to run on Wayland anyway.
/usr/bin/binoculars-gui:1276: DeprecationWarning: In future, it will be an 
error for 'np.bool_' scalars to be interpreted as an index
  box.setChecked(state)
/usr/lib/python3/dist-packages/binoculars/util.py:536: H5pyDeprecationWarning: 
dataset.value has been deprecated. Use dataset[()] instead.
  setattr(configobj, section, dict((key, config[section][key].value) for key in 
config[section]))
/usr/lib/python3/dist-packages/binoculars/util.py:475: H5pyDeprecationWarning: 
dataset.value has been deprecated. Use dataset[()] instead.
  setattr(meta, section, dict((key, group[key].value) for key in group))
/usr/bin/binoculars-gui:834: MatplotlibDeprecationWarning: Adding an axes using 
the same arguments as a previous axes currently reuses the earlier instance.  
In a future version, a new instance will always be created and returned.  
Meanwhile, this warning can be suppressed, and the future behavior ensured, by 
passing a unique label to each axes instance.
  self.ax = self.figure.add_subplot(plotrows, plotcolumns, i+1)
Traceback (most recent call last):
  File "/usr/bin/binoculars-gui", line 725, in update_key
self.plot()
  File "/usr/bin/binoculars-gui", line 843, in plot
im = binoculars.plot.plot(space, self.figure, self.ax, log=log, 
loglog=loglog, label=basename, norm=norm[i])
  File "/usr/lib/python3/dist-packages/binoculars/plot.py", line 157, in plot
fig._draggablecbar = DraggableColorbar(cbarwidget, im)  # we need to store 
this instance somewhere
  File "/usr/lib/python3/dist-packages/binoculars/plot.py", line 16, in __init__
self.index = self.cycle.index(cbar.get_cmap().name)
AttributeError: 'Colorbar' object has no attribute 'get_cmap'
Aborted

it makes binoculars unusable n bullseye...


-- System Information:
Debian Release: bullseye/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 5.10.0-4-amd64 (SMP w/4 CPU threads)
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages binoculars depends on:
ii  python3 3.9.2-2
ii  python3-binoculars  0.0.4-2
ii  python3-numpy   1:1.19.5-1

binoculars recommends no packages.

binoculars suggests no packages.

-- no debconf information

Bug#986692: crash at startup

[Picca Frédéric-Emmanuel]

Package: numptyphysics
Version: 0.2+svn157-0.4
Severity: grave
X-Debbugs-Cc: pi...@debian.org

the prgram do not start and crash at startup



-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.10.0-4-amd64 (SMP w/4 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages numptyphysics depends on:
ii  fonts-femkeklaver1.0-3
ii  libc62.31-11
ii  libfontconfig1   2.13.1-4.2
ii  libgcc-s1 [libgcc1]  10.2.1-6
ii  libsdl-image1.2  1.2.12-12
ii  libsdl-ttf2.0-0  2.0.11-6
ii  libsdl1.2debian  1.2.15+dfsg2-6
ii  libstdc++6   10.2.1-6
ii  libx11-6 2:1.7.0-2
ii  zlib1g   1:1.2.11.dfsg-2

numptyphysics recommends no packages.

numptyphysics suggests no packages.

-- no debconf information

Bug#986189: please advertise alsa Debian when creating a vm

[Picca Frédéric-Emmanuel]

Package: gnome-boxes
Version: 3.38.2-1
Severity: wishlist
X-Debbugs-Cc: pi...@debian.org

Hello,

I am debuging an upgrade buster -> bullseye problem for the tango-db package.
I installed tango-boxes in order to reproduce the issue on a fresh buster image.
the first advertize system are only RedHat related, it would be nice to add in
this list also the Debian system.

thanks for considering.

Frederic

-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.10.0-4-amd64 (SMP w/4 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages gnome-boxes depends on:
ii  dconf-gsettings-backend [gsettings-backend]  0.38.0-2
ii  genisoimage  9:1.1.11-3.2
ii  libarchive13 3.4.3-2+b1
ii  libc62.31-10
ii  libcairo21.16.0-5
ii  libfreerdp2-22.3.0+dfsg1-1
ii  libgdk-pixbuf-2.0-0  2.42.2+dfsg-1
ii  libgdk-pixbuf2.0-0   2.40.2-2
ii  libglib2.0-0 2.66.8-1
ii  libgtk-3-0   3.24.24-3
ii  libgtk-vnc-2.0-0 1.0.0-1
ii  libgtksourceview-4-0 4.8.0-1
ii  libgudev-1.0-0   234-1
ii  libhandy-0.0-0   0.0.13-3
ii  libosinfo-1.0-0  1.8.0-1
ii  libosinfo-bin1.8.0-1
ii  libpango-1.0-0   1.46.2-3
ii  libsecret-1-00.20.4-2
ii  libsoup2.4-1 2.72.0-2
ii  libspice-client-glib-2.0-8   0.39-1
ii  libspice-client-gtk-3.0-50.39-1
ii  libtracker-sparql-2.0-0  2.3.6-2
ii  libusb-1.0-0 2:1.0.24-3
ii  libvirt-daemon   7.0.0-3
ii  libvirt-glib-1.0-0   3.0.0-1
ii  libvte-2.91-00.62.3-1
ii  libwebkit2gtk-4.0-37 2.30.6-1
ii  libwinpr2-2  2.3.0+dfsg1-1
ii  libxml2  2.9.10+dfsg-6.3+b1
ii  tracker  2.3.6-2

Versions of packages gnome-boxes recommends:
ii  qemu-system-x86  1:5.2+dfsg-9

gnome-boxes suggests no packages.

-- no debconf information

Bug#985191: unblock: debian-pan/0.3

[Picca Frédéric-Emmanuel]

Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock
X-Debbugs-Cc: pi...@debian.org

Please unblock package debian-pan

it is a Debian blends, the objectif od this blends is to package
softwares for synchrotron and neutron facilities.

https://wiki.debian.org/DebianPAN

[ Reason ]
It would help working with other synchrotron radiation
on this project. The idea is to package as many scientific software
around synchrotron and neutron data's treatment, and make Debian
the natural OS for these facilities.

https://salsa.debian.org/pan-team

[ Impact ]
It would reduce the visibility of this effort

[ Tests ]
this package is just a meta packages, and I dealt with
the current state of testing. so it sould be ok.

[ Risks ]

I do not see a risk because all packages are already in testing
 with most of them some autopkgtest code.

[ Checklist ]
  [X] all changes are documented in the d/changelog
  [X] I reviewed all changes and I approve them
  [ ] attach debdiff against the package in testing

[ Other info ]
I missed the freeze, because, I was working on the packages in order
to have them ready for testing. Once all these packages were ready,
I updated the blends, but it was too late.

I would be really glade to see you considere this request.

thanks

Frederic

unblock debian-pan/0.3

Bug#985100: server suspended after installation

[Picca Frédéric-Emmanuel]

Package: general
Severity: normal
X-Debbugs-Cc: pi...@debian.org

Hello, I just wanted to report an issue I am facing with my servers.
I used the bullseye beta3 of the installer, but If I remember correctly
it was already the same with buster.

after installation and the final reboot, the server is suspended around 20 
minutes later.
it seems that I need to request no suspend, no sleep and no hybernate following 
the
instruction of this wiki page

https://wiki.debian.org/Suspend

Indeed, I forgot to apply this configuration before leaving the data center.

when I arrived to my office the server was down...

It seems to me that the default behaviour is not adapted to servers.

So I would like you to reconsider the default configuration of these target.

thanks for considering

Frederic

Bug#984638: could you backport h5py

[Picca Frédéric-Emmanuel]

Package: python3-h5py
Version: 2.10.0-9
Severity: wishlist
File: h5py
X-Debbugs-Cc: pi...@debian.org

Hello, is it possible to backport h5py on buster.
the hdf5 library seems compatible with the hdf5 library available on buster.
one of our package need the virtual dataset.

thanks for considering

Frederic.



-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.10.0-3-amd64 (SMP w/4 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages python3-h5py depends on:
ii  python3-h5py-serial  2.10.0-9+b2

python3-h5py recommends no packages.

Versions of packages python3-h5py suggests:
pn  python-h5py-doc  

-- no debconf information

Bug#983487: malloc(): unsorted double linked list corrupted

[Picca Frédéric-Emmanuel]

Package: asymptote
Version: 2.69+ds-1
Severity: normal
X-Debbugs-Cc: pi...@debian.org

Hello, I have this message when I try to compile this file



-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.10.0-3-amd64 (SMP w/4 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages asymptote depends on:
ii  freeglut32.8.1-6
ii  ghostscript  9.53.3~dfsg-7
ii  imagemagick  8:6.9.11.60+dfsg-1
ii  imagemagick-6.q16 [imagemagick]  8:6.9.11.60+dfsg-1
ii  install-info 6.7.0.dfsg.2-6
ii  libc62.31-9
ii  libfftw3-double3 3.3.8-2
ii  libgc1   1:8.0.4-3
ii  libgcc-s110.2.1-6
ii  libgl1   1.3.2-1
ii  libglew2.1   2.1.0-4+b1
ii  libglx0  1.3.2-1
ii  libgsl25 2.6+dfsg-2
ii  libreadline8 8.1-1
ii  libsigsegv2  2.13-1
ii  libstdc++6   10.2.1-6
ii  libtinfo66.2+20201114-2
ii  python3  3.9.1-1
ii  tex-common   6.16
ii  texlive-binaries 2020.20200327.54578-6
ii  texlive-latex-base   2020.20210202-3
ii  texlive-plain-generic2020.20210202-1
ii  texlive-pstricks 2020.20210202-1
ii  xdg-utils1.1.3-4
ii  zlib1g   1:1.2.11.dfsg-2

Versions of packages asymptote recommends:
ii  asymptote-doc  2.69+ds-1

Versions of packages asymptote suggests:
ii  asymptote-x11  2.69+ds-1

-- no debconf information
import three;

currentprojection=orthographic(1,0,0);
currentlight=White;

size(6cm);

triple b1 = (1, 0, 0);
triple b2 = (.31, .95, 0);
triple b3 = (.4, .5, 0.76);

// orthonormal coordinates
draw(Label("$\vec{x}$", 1), O--(2*X), gray, Arrow3());
draw(Label("$\vec{y}$", 1), O--(2*Y), gray, Arrow3());
draw(Label("$\vec{z}$", 1), O--(2*Z), gray, Arrow3());

// plan
draw(plane(2*X, 2*Y));
draw(plane(2*X, 2*Z));
draw(plane(2*Y, 2*Z));

// reciprocal space
draw(Label("$\vec{b_1}$", 1), O--b1, blue, Arrow3());
draw(Label("$\vec{b_2}$", 1), O--b2, red, Arrow3());
draw(Label("$\vec{b_3}$", 1), O--b3, green, Arrow3());

Bug#981568: cachefilesd: would truncate bmap result

[Picca Frédéric-Emmanuel]

Package: cachefilesd
Version: 0.10.10-0.2~bpo10+1
Severity: normal

Dear Maintainer,

When using  nfs, I get this error message in the kern.log

Jan 31 14:56:10 sixs3 kernel: [12927.812638] would truncate bmap result
Jan 31 14:56:10 sixs3 kernel: [12927.812646] WARNING: CPU: 22 PID: 16819 at 
fs/iomap.c:2150 iomap_bmap_actor+0x3f/0x50
Jan 31 14:56:10 sixs3 kernel: [12927.812646] Modules linked in: nvidia_uvm(OE) 
fuse rpcsec_gss_krb5 auth_rpcgss nfsv4 dns_resolver nfsv3 nfs_acl nfs lockd 
grace nft_chain_route_ipv4 xt_CHECKSUM nft_chain_nat_ipv4 ipt_MASQUERADE 
nf_nat_ipv4 nf_nat xt_conntrack nf_conntrack nf_defrag_ipv6 nf_defrag_ipv4 
ipt_REJECT nf_reject_ipv4 nft_counter xt_tcpudp nft_compat tun bridge stp llc 
devlink nf_tables nfnetlink rfkill cachefiles fscache binfmt_misc intel_rapl 
ipmi_ssif skx_edac nfit libnvdimm x86_pkg_temp_thermal intel_powerclamp 
coretemp kvm_intel nls_ascii nls_cp437 kvm xfs vfat fat snd_hda_codec_hdmi 
irqbypass crct10dif_pclmul crc32_pclmul snd_hda_intel ghash_clmulni_intel 
snd_hda_codec intel_cstate snd_hda_core intel_uncore snd_hwdep snd_pcm 
efi_pstore nvidia_drm(POE) joydev snd_timer intel_rapl_perf pcc_cpufreq pcspkr 
efivars snd
Jan 31 14:56:10 sixs3 kernel: [12927.812666]  soundcore sg iTCO_wdt mei_me 
iTCO_vendor_support nvidia_modeset(POE) mei ioatdma ipmi_si acpi_power_meter 
acpi_pad evdev nvidia(POE) ipmi_devintf ipmi_msghandler sunrpc parport_pc ppdev 
lp parport efivarfs ip_tables x_tables autofs4 ext4 crc16 mbcache jbd2 fscrypto 
ecb raid10 raid456 async_raid6_recov async_memcpy async_pq async_xor async_tx 
xor raid6_pq libcrc32c crc32c_generic raid1 raid0 multipath linear md_mod 
hid_generic usbhid hid sd_mod amdkfd amdgpu crc32c_intel ast chash gpu_sched 
i2c_algo_bit ttm aesni_intel ahci aes_x86_64 crypto_simd drm_kms_helper 
xhci_pci ixgbe libahci i40e cryptd xhci_hcd arcmsr glue_helper libata dca drm 
mdio usbcore scsi_mod i2c_i801 lpc_ich mfd_core usb_common wmi button
Jan 31 14:56:10 sixs3 kernel: [12927.812692] CPU: 22 PID: 16819 Comm: pool 
Tainted: PW  OE 4.19.0-13-amd64 #1 Debian 4.19.160-2
Jan 31 14:56:10 sixs3 kernel: [12927.812693] Hardware name: Supermicro 
SYS-6029P-TR/X11DPi-N, BIOS 3.0 10/12/2018
Jan 31 14:56:10 sixs3 kernel: [12927.812695] RIP: 
0010:iomap_bmap_actor+0x3f/0x50
Jan 31 14:56:10 sixs3 kernel: [12927.812697] Code: 8f 8e 00 00 00 49 2b 70 08 
49 03 30 48 d3 ee 48 81 fe ff ff ff 7f 77 06 48 89 30 31 c0 c3 48 c7 c7 b4 c8 
07 aa e8 db 7d da ff <0f> 0b 31 c0 c3 66 66 2e 0f 1f 84 00 00 00 00 00 90 0f 1f 
44 00 00
Jan 31 14:56:10 sixs3 kernel: [12927.812698] RSP: 0018:b4f9e3b8b898 EFLAGS: 
00010282
Jan 31 14:56:10 sixs3 kernel: [12927.812700] RAX:  RBX: 
 RCX: 0006
Jan 31 14:56:10 sixs3 kernel: [12927.812701] RDX: 0007 RSI: 
0092 RDI: 8b7a3fa966b0
Jan 31 14:56:10 sixs3 kernel: [12927.812702] RBP: 2000 R08: 
28bcb250 R09: 0004
Jan 31 14:56:10 sixs3 kernel: [12927.812703] R10:  R11: 
0001 R12: 1000
Jan 31 14:56:10 sixs3 kernel: [12927.812704] R13: 8b5a1333a2f8 R14: 
c2396a90 R15: a94d64c0
Jan 31 14:56:10 sixs3 kernel: [12927.812706] FS:  7f733936e700() 
GS:8b7a3fa8() knlGS:
Jan 31 14:56:10 sixs3 kernel: [12927.812707] CS:  0010 DS:  ES:  CR0: 
80050033
Jan 31 14:56:10 sixs3 kernel: [12927.812708] CR2: 7f737203a008 CR3: 
001fa9ce0001 CR4: 007606e0
Jan 31 14:56:10 sixs3 kernel: [12927.812709] DR0:  DR1: 
 DR2: 
Jan 31 14:56:10 sixs3 kernel: [12927.812710] DR3:  DR6: 
fffe0ff0 DR7: 0400
Jan 31 14:56:10 sixs3 kernel: [12927.812711] PKRU: 5554
Jan 31 14:56:10 sixs3 kernel: [12927.812712] Call Trace:
Jan 31 14:56:10 sixs3 kernel: [12927.812714]  iomap_apply+0xba/0x120
Jan 31 14:56:10 sixs3 kernel: [12927.812717]  iomap_bmap+0x5e/0x72
Jan 31 14:56:10 sixs3 kernel: [12927.812719]  ? iomap_fiemap_actor+0x90/0x90
Jan 31 14:56:10 sixs3 kernel: [12927.812725]  
cachefiles_read_or_alloc_pages+0x18f/0xcf0 [cachefiles]
Jan 31 14:56:10 sixs3 kernel: [12927.812728]  ? __wait_on_bit+0x58/0x90
Jan 31 14:56:10 sixs3 kernel: [12927.812734]  ? 
fscache_run_op.isra.11+0x55/0xb0 [fscache]
Jan 31 14:56:10 sixs3 kernel: [12927.812741]  
__fscache_read_or_alloc_pages+0x210/0x2c0 [fscache]
Jan 31 14:56:10 sixs3 kernel: [12927.812753]  
__nfs_readpages_from_fscache+0x63/0x160 [nfs]
Jan 31 14:56:10 sixs3 kernel: [12927.812764]  nfs_readpages+0xb5/0x1a0 [nfs]
Jan 31 14:56:10 sixs3 kernel: [12927.812767]  ? try_to_wake_up+0x54/0x470
Jan 31 14:56:10 sixs3 kernel: [12927.812770]  read_pages+0x6b/0x190
Jan 31 14:56:10 sixs3 kernel: [12927.812773]  
__do_page_cache_readahead+0x1c1/0x1e0
Jan 31 14:56:10 sixs3 kernel: [12927.812775]  ondemand_readahead+0x1f9/0x2c0
Jan 31 14:56:10 sixs3 kernel: [12927.812777]  ? pagecache_get_page+0x30/0x2c0

Bug#979491: xmlrpclib.Fault:

[Picca Frédéric-Emmanuel]

Package: python3-stdeb
Version: 0.8.5-3
Severity: important
X-Debbugs-Cc: pi...@debian.org

Hello,

while trying to install a package with pypi-install, I got this error

# DEB_BUILD_OPTIONS= pypi-install bcdi --allow-unsafe-download 
--with-python2=False --with-python3=True
Traceback (most recent call last):
  File "/usr/bin/pypi-install", line 67, in 
main()
  File "/usr/bin/pypi-install", line 48, in main
allow_unsafe_download=options.allow_unsafe_download)
  File "/usr/lib/python2.7/dist-packages/stdeb/downloader.py", line 91, in 
get_source_tarball
release=release)
  File "/usr/lib/python2.7/dist-packages/stdeb/downloader.py", line 47, in 
find_tar_gz
default_releases = pypi.package_releases(package_name)
  File "/usr/lib/python2.7/xmlrpclib.py", line 1243, in __call__
return self.__send(self.__name, args)
  File "/usr/lib/python2.7/xmlrpclib.py", line 1602, in __request
verbose=self.__verbose
  File "/usr/lib/python2.7/dist-packages/stdeb/transport.py", line 64, in 
request
return self.parse_response(resp)
  File "/usr/lib/python2.7/dist-packages/stdeb/transport.py", line 88, in 
parse_response
return u.close()
  File "/usr/lib/python2.7/xmlrpclib.py", line 800, in close
raise Fault(**self._stack[0])
xmlrpclib.Fault: 

Maybe something changed at the server level, and need to be taken into account.

Cheers

Frederic



-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.9.0-5-amd64 (SMP w/4 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages python3-stdeb depends on:
ii  debhelper [debhelper-compat]  13.3.1
ii  python3   3.9.1-1
ii  python3-requests  2.25.1+dfsg-2
ii  python3-setuptools51.1.0-1

Versions of packages python3-stdeb recommends:
ii  apt-file 3.2.2
ii  dpkg-dev 1.20.5
ii  python3-all  3.9.1-1

Versions of packages python3-stdeb suggests:
ii  python3-all-dev  3.9.1-1

-- no debconf information

Bug#977835: Please package the lastest version >= 3.5.2

[Picca Frédéric-Emmanuel]

Package: musescore3
Severity: wishlist
X-Debbugs-Cc: pi...@debian.org

Everythings in the title :))

thanks for considering

Frederic


-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.9.0-5-amd64 (SMP w/4 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#976358: [bts] failed to open SMTP connection to reportbug.debian.org

[Picca Frédéric-Emmanuel]

Package: devscripts
Version: 2.20.5
Severity: normal
File: /usr/bin/bts
X-Debbugs-Cc: pi...@debian.org


Hello, while trying to use tagpending on one of my packages, I got this error 
message

$ tagpending
tagpending info: tagging these bugs pending: 975709
bts: failed to open SMTP connection to reportbug.debian.org
(SSL connect attempt failed error:1416F086:SSL 
routines:tls_process_server_certificate:certificate verify failed)

Cheers

-- Package-specific info:

--- /etc/devscripts.conf ---
BTS_SMTP_HOST=reportbug.debian.org

--- ~/.devscripts ---
Empty.

-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.9.0-4-amd64 (SMP w/4 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages devscripts depends on:
ii  dpkg-dev  1.20.5
ii  fakeroot  1.25.3-1.1
ii  file  1:5.39-3
ii  gnupg 2.2.20-1
ii  gnupg22.2.20-1
ii  gpgv  2.2.20-1
ii  libc6 2.31-5
ii  libfile-dirlist-perl  0.05-2
ii  libfile-homedir-perl  1.006-1
ii  libfile-touch-perl0.11-1
ii  libfile-which-perl1.23-1
ii  libipc-run-perl   20200505.0-1
ii  libmoo-perl   2.004004-1
ii  libwww-perl   6.49-1
ii  patchutils0.4.2-1
ii  perl  5.32.0-5
ii  python3   3.9.0-3
ii  sensible-utils0.0.12+nmu1
ii  wdiff 1.2.2-2+b1

Versions of packages devscripts recommends:
ii  apt 2.1.12
ii  curl7.72.0-1
ii  dctrl-tools 2.24-3+b1
ii  debian-keyring  2020.09.24
ii  dput-ng [dput]  1.31
ii  equivs  2.3.1
ii  libdistro-info-perl 0.24
ii  libdpkg-perl1.20.5
ii  libencode-locale-perl   1.05-1
ii  libgit-wrapper-perl 0.048-1
ii  libgitlab-api-v4-perl   0.25-2
ii  liblist-compare-perl0.55-1
ii  liblwp-protocol-https-perl  6.09-1
ii  libsoap-lite-perl   1.27-1
ii  libstring-shellquote-perl   1.04-1
ii  libtry-tiny-perl0.30-1
ii  liburi-perl 5.05-1
ii  licensecheck3.0.47-1
ii  lintian 2.104.0
ii  man-db  2.9.3-2
ii  patch   2.7.6-6
ii  pristine-tar1.49
ii  python3-apt 2.1.6
ii  python3-debian  0.1.38
ii  python3-magic   2:0.4.15-5
ii  python3-requests2.24.0+dfsg-1
ii  python3-unidiff 0.5.5-2
ii  python3-xdg 0.26-3
ii  strace  5.5-3
ii  unzip   6.0-25
ii  wget1.20.3-1+b3
ii  xz-utils5.2.4-1+b1

Versions of packages devscripts suggests:
ii  adequate 0.15.3
ii  at   3.1.23-1.1
ii  autopkgtest  5.15
pn  bls-standalone   
ii  bsd-mailx [mailx]8.1.2-0.20180807cvs-2
ii  build-essential  12.8
pn  check-all-the-things 
pn  cvs-buildpackage 
ii  debhelper13.2.1
pn  devscripts-el
pn  diffoscope   
pn  disorderfs   
pn  dose-extra   
pn  duck 
pn  faketime 
ii  gnuplot  5.4.0+dfsg1-1
ii  gnuplot-qt [gnuplot] 5.4.0+dfsg1-1
pn  how-can-i-help   
ii  libauthen-sasl-perl  2.1600-1
pn  libdbd-pg-perl   
ii  libfile-desktopentry-perl0.22-2
ii  libnet-smtps-perl0.10-1
pn  libterm-size-perl
ii  libtimedate-perl 2.3300-1
pn  libyaml-syck-perl
ii  mailutils [mailx]1:3.10-3+b1
pn  mmdebstrap   
pn  mozilla-devscripts   
ii  mutt 2.0.2-1
ii  openssh-client [ssh-client]  1:8.4p1-3
ii  piuparts 1.1.1
pn  postgresql-client
ii  quilt0.66-2.1
pn  ratt 
pn  reprotest
pn  svn-buildpackage 
ii  w3m  0.5.3-38+b1

-- no debconf information

Bug#973306: Can not use the link in a research page

[Picca Frédéric-Emmanuel]

Package: hoogle
Version: 5.0.18+dfsg1-1+b1
Severity: important
X-Debbugs-Cc: pi...@debian.org


Hello,

When I start hoogle server and connect to localhost:8080 with firefox, I get 
the research page.

I click then on the map research (the example), this way I get an exemple of 
research.

then I try to click on a map from the dimensional package.

nothing happend, but If I click to copy the link and open it into another page, 
I get the correct documentation.

file:///usr/share/doc/libghc-dimensional-doc/html/Numeric-Units-Dimensional-Prelude.html#v:map


so it seems to me that the hoogle pages are disfunctional

thanks

Frederic


-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.9.0-1-amd64 (SMP w/2 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages hoogle depends on:
ii  ghc-doc8.8.4-1
ii  libc6  2.31-4
ii  libffi73.3-4
ii  libghc-js-jquery-data  3.3.1-3
ii  libgmp10   2:6.2.0+dfsg-6
ii  libjs-chosen   1.8.7+dfsg-1
ii  libjs-jquery   3.5.1+dfsg-4
ii  libjs-jquery-cookie12-1.1
ii  zlib1g 1:1.2.11.dfsg-2

hoogle recommends no packages.

hoogle suggests no packages.

-- no debconf information

Bug#972792: problem with fontify

[Picca Frédéric-Emmanuel]

Package: haskell-mode
Version: 17.2-1
Severity: normal
X-Debbugs-Cc: pi...@debian.org

Hello I use these parameters in order to edit my haskell files.

 '(haskell-font-lock-symbols t)
 '(haskell-mode-hook (quote (flyspell-prog-mode haskell-indent-mode)))
 '(haskell-stylish-on-save t)

On Debian stable, I have no issue.

but on Debian unstable, the

>-> (from Pipes) arrow is not display the right way.

I do not know if this is an haskell-mode problem or an emacs issue.

cheers

Frederic


-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.9.0-1-amd64 (SMP w/4 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages haskell-mode depends on:
ii  elpa-haskell-mode  17.2-1

haskell-mode recommends no packages.

haskell-mode suggests no packages.

-- no debconf information

Bug#971942: transition: ufo-core

[Picca Frédéric-Emmanuel]

Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
X-Debbugs-Cc: pi...@debian.org

(please explain about the transition: impacted packages, reason, ...
 for more info see: https://wiki.debian.org/Teams/ReleaseTeam/Transitions)


Hello,

I request a slot for the ufo-core transition.
the auto-ufo-core ben file seems ok to me

I checked that all packages are ok in experimental.

thanks for considering

Frederic

-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.8.0-2-amd64 (SMP w/4 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#971846: GPL Ghostscript 9.53.3: Unrecoverable error, exit code 1

[Picca Frédéric-Emmanuel]

Package: asymptote
Version: 2.67-1
Severity: important
File: /usr/bin/asy
X-Debbugs-Cc: pi...@debian.org

Hello, with the attached file, I get this error message

~/hkl/Documentation/figures$ asy B_a.asy
GPL Ghostscript 9.53.3: 
   *** EPS files may not contain multiple pages.
   *** Use of the %d filename format is required to output pages to multiple 
EPS files.
GPL Ghostscript 9.53.3: Unrecoverable error, exit code 1

Cheers


-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.8.0-2-amd64 (SMP w/4 CPU threads)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages asymptote depends on:
ii  freeglut32.8.1-6
ii  ghostscript  9.53.3~dfsg-4
ii  imagemagick  8:6.9.11.24+dfsg-1+b1
ii  imagemagick-6.q16 [imagemagick]  8:6.9.11.24+dfsg-1+b1
ii  install-info 6.7.0.dfsg.2-5
ii  libc62.31-3
ii  libfftw3-double3 3.3.8-2
ii  libgc1   1:8.0.4-2
ii  libgcc-s110.2.0-13
ii  libgl1   1.3.2-1
ii  libglew2.1   2.1.0-4+b1
ii  libglx0  1.3.2-1
ii  libgsl25 2.6+dfsg-2
ii  libreadline8 8.0-4
ii  libsigsegv2  2.12-2
ii  libstdc++6   10.2.0-13
ii  libtinfo66.2+20200918-1
ii  python3  3.8.2-3
ii  tex-common   6.15
ii  texlive-binaries 2020.20200327.54578-5
ii  texlive-latex-base   2020.20200925-1
ii  texlive-plain-generic2020.20200925-1
ii  texlive-pstricks 2020.20200925-1
ii  xdg-utils1.1.3-2
ii  zlib1g   1:1.2.11.dfsg-2

Versions of packages asymptote recommends:
ii  asymptote-doc  2.67-1

Versions of packages asymptote suggests:
pn  asymptote-x11  

-- no debconf information
import three;

size(6cm);
currentprojection=orthographic(1,0,0);
currentlight=White;

triple b1 = (1, 0, 0);
triple b2 = (.31, .95, 0);
triple b3 = (.4, .5, 0.76);

triple a1 = cross(b2, b3);
triple a2 = cross(b3, b1);
triple a3 = cross(b1, b2);

// orthonormal coordinates
draw(Label("$\vec{x}$", 1), O--(2*X), gray, Arrow3());
draw(Label("$\vec{y}$", 1), O--(2*Y), gray, Arrow3());
draw(Label("$\vec{z}$", 1), O--(2*Z), gray, Arrow3());

// reciprocal space
draw(Label("$\vec{b_1}$", 1), O--b1, blue, Arrow3());
draw(Label("$\vec{b_2}$", 1), O--b2, red, Arrow3());
draw(Label("$\vec{b_3}$", 1), O--b3, green, Arrow3());

// real space
draw(Label("$\vec{a_1}$", 1), O--a1, cyan, Arrow3());
draw(Label("$\vec{a_2}$", 1), O--a2, magenta, Arrow3());
draw(Label("$\vec{a_3}$", 1), O--a3, yellow, Arrow3());

Bug#962813: does not build with ghc 8.8

[Picca Frédéric-Emmanuel]

Source: haskell-tree-monad
Severity: critical

Hello,

this package does not build with the up-comming ghc 8.8 version.
It is not part of stackage LTS, and it was not updated by upstream since 2009.
It means that there is few chance to see the upstream fix this issue.

so it is considere to remove it from Debian.

Someone can salvage it by providing a patch (prefereably to the upstream first).

Cheers
 


-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.6.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#962591: babel conf and minted

[Picca Frédéric-Emmanuel]

Package: org-mode
Version: 9.3.1+dfsg-1
Severity: normal

Hello, I am wrinting a document with org-mode
It contain this

   #+BEGIN_SRC conf
 [dispatcher]
 # ncores =
 destination = .
 overwrite = false
 [input]
 type = sixs:flyscanuhv
 nexusdir = /home/picca/hkl/contrib/haskell/
 [projection]
 type = qxqyqzprojection
 resolution = 1.0e-2,1.0e-2,1.0e-2
   #+END_S

and I am using

#+LaTeX_HEADER: \usepackage{minted}
#+LaTeX_HEADER: \usemintedstyle{tango}

It is nice because the right minor mode is used to edit this code.

but when I export this as pdf, this snipset is exported like this

\begin{minted}[]{conf}
[dispatcher]
# ncores =
destination = .
overwrite = false
[input]
type = sixs:flyscanuhv
nexusdir = /home/picca/hkl/contrib/haskell/
[projection]
type = qxqyqzprojection
resolution = 1.0e-2,1.0e-2,1.0e-2
\end{minted}

the problem is that minted does not know about conf.

$ pygmentize -L lexers | grep ini
* ini, cfg, dosini:
INI (filenames *.ini, *.cfg, *.inf)
* minid:
MiniD

Instead of conf minted expect ini|cfg|doseini for this kind of source code.

To solve this issue, it seems to me that org-mode should convert conf into ini 
when exported to mint.

the other solution is to learn about cfg|ini|nodeini, whcih should be nice also.

cheers

Frederic

-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.6.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages org-mode depends on:
ii  elpa-org  9.3.1+dfsg-1

org-mode recommends no packages.

org-mode suggests no packages.

-- no debconf information

Bug#960862: NotImplementedError:

[Picca Frédéric-Emmanuel]

Package: silver-platter
Version: 0.3.0+git20200516.9f9af15-1
Severity: normal

Hello when I try to log to salsa.debian.org, I get this error message

$ svp login https://salsa.debian.org
Traceback (most recent call last):
  File "/usr/bin/svp", line 11, in 
load_entry_point('silver-platter==0.3.0', 'console_scripts', 'svp')()
  File "/usr/lib/python3/dist-packages/silver_platter/__main__.py", line 121, 
in main
return callbacks[args.subcommand](args)
  File "/usr/lib/python3/dist-packages/silver_platter/__main__.py", line 65, in 
login_main
return cmd.run(args.url)
  File "/usr/lib/python3/dist-packages/breezy/commands.py", line 784, in run
return self._operation.run_simple(*args, **kwargs)
  File "/usr/lib/python3/dist-packages/breezy/cleanup.py", line 136, in 
run_simple
return _do_with_cleanups(
  File "/usr/lib/python3/dist-packages/breezy/cleanup.py", line 166, in 
_do_with_cleanups
result = func(*args, **kwargs)
  File "/usr/lib/python3/dist-packages/breezy/plugins/propose/cmds.py", line 
306, in run
private_token = ui.ui_factory.get_password(u'Private token')
  File "/usr/lib/python3/dist-packages/breezy/ui/__init__.py", line 239, in 
get_password
raise NotImplementedError(self.get_password)
NotImplementedError: 

Cheers


-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.6.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages silver-platter depends on:
ii  brz-debian2.8.35
ii  devscripts2.20.3
ii  lintian-brush 0.64
ii  python3   3.8.2-3
ii  python3-breezy3.0.2-5+b1
ii  python3-distro-info   0.23
ii  python3-dulwich   0.19.15-1+b1
ii  python3-github1.43.7-1
ii  python3-gitlab1:2.2.0-1
ii  python3-launchpadlib  1.10.13-1
ii  python3-testtools 2.3.0-7
ii  python3-yaml  5.3.1-2

Versions of packages silver-platter recommends:
ii  brz  3.0.2-5

silver-platter suggests no packages.

-- no debconf information

Bug#960840: Please provide a buster-backports of lzf

[Picca Frédéric-Emmanuel]

Source: liblzf
Severity: normal


Hello, I would like at the end to backport the bitshuffle packahe which contain 
hdf5 plugins.
Since lzf will become a dependency of bitshuffle, It would be great to have 
this backports.

thanks for considering

-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.6.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#960751: TypeError: debuild_config() missing 1 required positional argument: 'subpath'

[Picca Frédéric-Emmanuel]

Package: silver-platter
Version: 0.2.0+git20191022.7591492-1
Severity: normal

Hello, while trying to use silver-platter, I got this error

debian-svp new-upstream https://salsa.debian.org/science-team/python-fabio
https://salsa.debian.org/science-team/python-fabio/ is permanently redirected 
to https://salsa.debian.org/science-team/python-fabio.git/
07/2582)


(1679/2582)
Total 2582 (delta 1805), reused 2267 (delta 1500), pack-reused 0





Traceback (most recent call last):
  File "/usr/bin/debian-svp", line 11, in 
load_entry_point('silver-platter==0.2.0', 'console_scripts', 'debian-svp')()
  File "/usr/lib/python3/dist-packages/silver_platter/debian/__main__.py", line 
61, in main
return callbacks[args.subcommand](args)
  File "/usr/lib/python3/dist-packages/silver_platter/debian/upstream.py", line 
552, in main
merge_upstream_result = merge_upstream(
  File "/usr/lib/python3/dist-packages/silver_platter/debian/upstream.py", line 
292, in merge_upstream
config = debuild_config(tree)
TypeError: debuild_config() missing 1 required positional argument: 'subpath'

Cheers

Frederic

-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.6.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages silver-platter depends on:
ii  brz-debian2.8.35
ii  devscripts2.20.3
ii  lintian-brush 0.63
ii  python3   3.8.2-3
ii  python3-breezy3.0.2-5+b1
ii  python3-distro-info   0.23
ii  python3-dulwich   0.19.15-1+b1
ii  python3-github1.43.7-1
ii  python3-gitlab1:2.2.0-1
ii  python3-launchpadlib  1.10.13-1
ii  python3-testtools 2.3.0-7

Versions of packages silver-platter recommends:
ii  brz  3.0.2-5

silver-platter suggests no packages.

-- no debconf information

Bug#960655: install the lzf_plugin in the system hdf5 plugin directory

[Picca Frédéric-Emmanuel]

Source: h5py
Severity: normal


Hello, in order to have a system wide availability of the lzf plugin, it woud 
be nice to install it under the

hdf5 plugin directory.

you can find the directory with pkg-config and the variable PluginDir for each 
flavour of hdf5

---
Name: HDF5
Description: Hierarchical Data Format 5 (HDF5) - serial version
Version: 1.10.6
Requires: 
Cflags: -I/usr/include/hdf5/serial
Libs: -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5

PluginDir=/usr/lib/x86_64-linux-gnu/hdf5/serial/plugins
---

Idealy these plugin should be linked and compile with the corresponding hdf5 
library.

I am wondering also if this should not be provided in a dedicated binary 
packages.
This way we could have a meta package which should depends on all the available 
plugins.

then all other source package which provide these plugin could do the same.

and hdf5 could recommendes all the plugins.

we could imagine a name like this for these package

hdf5-plugin--

then we could create a

hdf5-plugin-all-

thanks for considering.

Frederic

-- System Information:
Debian Release: bullseye/sid
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'proposed-updates-debug'), (500, 
'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.6.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#960116: bad interaction with parameter substitution

[Picca Frédéric-Emmanuel]

Package: dh-python
Version: 4.20200315
Severity: normal

Hello, I try to use parameter substitution in one of my package.

something with this line

# install all the non .py files of the sources  

 
# modules   

 
dh_auto_install -- -s custom --install-args='find modules -path 
"modules/cctbx_project" -prune -o -name "__init__.py" -print0 |\
 
while read -d $$"\0" file; do fdir=`dirname "$$file"`\  

 
; find "$fdir" -maxdepth 1 \\\  

 
-name "*.py" -prune \\\ 

 
-o -name "*.c" \\\  

 
-o -name "*.cc" \\\ 

 
-o -name "*.cpp" \\\

 
-o -name "*.h" \\\  

 
-o -name "*.hpp" \\\

 
-o -name "*.f" \\\  

 
-o -name "SConscript" \\\   

 
-o -name "\.*" \\\  

 
-o -name "*.rst" \\\

 
-o -name "*.md" \\\ 

 
-o -name "*.toml" \\\   

 
-o -name "LICENSE*" \\\ 

 
-o -name "AUTHORS*" \\\ 

 
-o -type d \\\  

 
-o -print0 |\   

 
while read -d $$"\0" ffile; do \

 
dh_install -p python3-dials --sourcedir=modules 
"$${ffile#modules/}" {install_dir};\
 
done \  

 
done'

But it failes with this error

E: pybuild pybuild:352: install: plugin custom failed with: 'ffile#modules/'
Traceback (most recent call last):
  File "/usr/bin/pybuild", line 350, in main
run(func, i, version, c)
  File "/usr/bin/pybuild", line 301, in run
result = func(context, args)
  File "/usr/share/dh-python/

Bug#959964: What about moving bitshuffle into debian-science

[Picca Frédéric-Emmanuel]

Package: bitshuffle
Version: 0.3.5-3.1
Severity: wishlist

Dear Maintainer,

I would like to help improving bitshuffle by

1) unbranding lzf and lz4
2) providing hdf( plugins at the system level for hdf5-serial and hdf5-mpi

So would you considere moving bitshuffle under the debian-science team umbrella.

thanks

Frederic


-- System Information:
Debian Release: bullseye/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.6.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages bitshuffle depends on:
ii  cython30.29.14-1
ii  libc6  2.30-7
ii  libgomp1   10-20200502-1
ii  libhdf5-openmpi-103-1  1.10.6+repack-2
ii  python33.8.2-3
ii  python3-h5py   2.10.0-7
ii  python3-numpy  1:1.18.4-1
ii  python3-pkg-resources  46.1.3-1

bitshuffle recommends no packages.

bitshuffle suggests no packages.

-- no debconf information

Bug#958174: hdf5: please add the hdf5plugins

[Picca Frédéric-Emmanuel]

Source: hdf5
Severity: normal

Dear Maintainer,

I saw on the hdf5 group website that they provide also hdf5plugin

https://www.hdfgroup.org/downloads/hdf5/

Is it possible to add these plugins in the hdf5 package.

thanks for considering

Frederic


-- System Information:
Debian Release: bullseye/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.5.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#952588: python3-matplotlib: should depends on python3-tk ?

[Picca Frédéric-Emmanuel]

Package: python3-matplotlib
Version: 3.0.2-2
Severity: normal

Dear Maintainer,


I maintain the pyFAI package whcih use matplotlib.
so during the autopkgtest it tried to run use matplotlib and the defaulkt 
backend seems to be
tk.

But I have a failure, like this


INFO:matplotlib.font_manager:generated new fontManager
Traceback (most recent call last):
  File "run_tests.py", line 543, in 
unittest.defaultTestLoader.loadTestsFromNames(options.test_name))
  File "/usr/lib/python3.8/unittest/loader.py", line 220, in loadTestsFromNames
suites = [self.loadTestsFromName(name, module) for name in names]
  File "/usr/lib/python3.8/unittest/loader.py", line 220, in 
suites = [self.loadTestsFromName(name, module) for name in names]
  File "/usr/lib/python3.8/unittest/loader.py", line 205, in loadTestsFromName
test = obj()
  File "/usr/lib/python3/dist-packages/pyFAI/test/__init__.py", line 62, in 
suite
from . import test_all
  File "/usr/lib/python3/dist-packages/pyFAI/test/test_all.py", line 47, in 

from . import test_histogram
  File "/usr/lib/python3/dist-packages/pyFAI/test/test_histogram.py", line 51, 
in 
import pylab
  File "/usr/lib/python3/dist-packages/pylab.py", line 1, in 
from matplotlib.pylab import *
  File "/usr/lib/python3/dist-packages/matplotlib/pylab.py", line 235, in 

from matplotlib import cbook, mlab, pyplot as plt
  File "/usr/lib/python3/dist-packages/matplotlib/pyplot.py", line 2349, in 

switch_backend(rcParams["backend"])
  File "/usr/lib/python3/dist-packages/matplotlib/pyplot.py", line 221, in 
switch_backend
backend_mod = importlib.import_module(backend_name)
  File "/usr/lib/python3.8/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
  File "/usr/lib/python3/dist-packages/matplotlib/backends/backend_tkagg.py", 
line 1, in 
from . import _backend_tk
  File "/usr/lib/python3/dist-packages/matplotlib/backends/_backend_tk.py", 
line 6, in 
import tkinter as tk
ModuleNotFoundError: No module named 'tkinter'



Should'nt matplotlib depends on python3-tk, in order to provide a default 
backend ?

Idem for the -dbg package


-- System Information:
Debian Release: 10.3
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.19.0-8-amd64 (SMP w/24 CPU cores)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8), 
LANGUAGE=en_GB.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages python3-matplotlib depends on:
ii  libc6   2.28-10
ii  libfreetype62.9.1-3+deb10u1
ii  libgcc1 1:8.3.0-6
ii  libjs-jquery3.3.1~dfsg-3
ii  libjs-jquery-ui 1.12.1+dfsg-5
ii  libpng16-16 1.6.36-6
ii  libstdc++6  8.3.0-6
ii  python-matplotlib-data  3.0.2-2
ii  python3 3.7.3-1
ii  python3-cycler  0.10.0-1
ii  python3-dateutil2.7.3-3
ii  python3-kiwisolver  1.0.1-2+b1
ii  python3-numpy [python3-numpy-abi9]  1:1.16.2-1
ii  python3-pyparsing   2.2.0+dfsg1-2
ii  python3-six 1.12.0-1
ii  zlib1g  1:1.2.11.dfsg-1

Versions of packages python3-matplotlib recommends:
ii  python3-pil  5.4.1-2
ii  python3-tk   3.7.3-1

Versions of packages python3-matplotlib suggests:
pn  dvipng 
pn  ffmpeg 
ii  ghostscript9.27~dfsg-2+deb10u3
ii  gir1.2-gtk-3.0 3.24.5-1
ii  inkscape   0.92.4-3
ii  ipython3   5.8.0-1
ii  librsvg2-common2.44.10-2.1
pn  python-matplotlib-doc  
pn  python3-cairocffi  
ii  python3-gi 3.30.4-1
ii  python3-gi-cairo   3.30.4-1
pn  python3-gobject
pn  python3-nose   
ii  python3-pyqt4  4.12.1+dfsg-2+b1
ii  python3-scipy  1.1.0-7
ii  python3-sip4.19.14+dfsg-2
ii  python3-tornado5.1.1-4
ii  texlive-extra-utils2018.20190227-2
ii  texlive-latex-extra2018.20190227-2
pn  ttf-staypuft   

-- no debconf information

Bug#831870: /usr/bin/uscan: Re: devscripts: [mk-origtargz] Fails to create tar with Files-Excluded

[Picca Frédéric-Emmanuel]

Package: devscripts
Version: 2.19.5+deb10u1
Followup-For: Bug #831870

Dear Maintainer,

I am also affected by this bug for the tango package, whcih excludes a bunch of 
.jar files.
Do we know which tool must be fixed in order to resolve this issue ?
It is not clear to me if this is a bug of tar or a bug in mk-origtargz ?

In my case the tar file was generated from a github tag.

Cheers

Frederic

-- Package-specific info:

--- /etc/devscripts.conf ---

--- ~/.devscripts ---
Not present

-- System Information:
Debian Release: 10.1
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.19.0-6-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8), 
LANGUAGE=en_GB.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages devscripts depends on:
ii  dpkg-dev  1.19.7
ii  fakeroot  1.23-1
ii  file  1:5.35-4+deb10u1
ii  gnupg 2.2.12-1+deb10u1
ii  gnupg22.2.12-1+deb10u1
ii  gpgv  2.2.12-1+deb10u1
ii  libc6 2.28-10
ii  libfile-homedir-perl  1.004-1
ii  libfile-which-perl1.23-1
ii  libipc-run-perl   20180523.0-1
ii  libmoo-perl   2.003004-2
ii  libwww-perl   6.36-2
ii  patchutils0.3.4-2
ii  perl  5.28.1-6
ii  python3   3.7.3-1
ii  sensible-utils0.0.12
ii  wdiff 1.2.2-2+b1

Versions of packages devscripts recommends:
ii  apt 1.8.2
ii  at  3.1.23-1
ii  curl7.64.0-4
ii  dctrl-tools 2.24-3
ii  debian-keyring  2019.02.25
ii  dput-ng [dput]  1.25+deb10u1
ii  equivs  2.2.0
ii  libdistro-info-perl 0.21
ii  libdpkg-perl1.19.7
ii  libencode-locale-perl   1.05-1
ii  libgit-wrapper-perl 0.048-1
ii  libgitlab-api-v4-perl   0.16-1
ii  liblist-compare-perl0.53-1
ii  liblwp-protocol-https-perl  6.07-2
ii  libsoap-lite-perl   1.27-1
ii  libstring-shellquote-perl   1.04-1
ii  libtry-tiny-perl0.30-1
ii  liburi-perl 1.76-1
ii  licensecheck3.0.31-3
ii  lintian 2.15.0
ii  man-db  2.8.5-2
ii  patch   2.7.6-3+deb10u1
ii  python3-apt 1.8.4
ii  python3-debian  0.1.35
ii  python3-magic   2:0.4.15-2
ii  python3-requests2.21.0-1
ii  python3-unidiff 0.5.4-1
ii  python3-xdg 0.25-5
ii  strace  4.26-0.2
ii  unzip   6.0-23+deb10u1
ii  wget1.20.1-1.1
ii  xz-utils5.2.4-1

Versions of packages devscripts suggests:
ii  adequate 0.15.2
ii  autopkgtest  5.10
pn  bls-standalone   
ii  bsd-mailx [mailx]8.1.2-0.20180807cvs-1
ii  build-essential  12.6
pn  check-all-the-things 
pn  cvs-buildpackage 
ii  debhelper12.1.1
pn  devscripts-el
pn  diffoscope   
pn  disorderfs   
pn  dose-extra   
pn  duck 
pn  faketime 
ii  gnuplot  5.2.6+dfsg1-1+deb10u1
ii  gnuplot-x11 [gnuplot]5.2.6+dfsg1-1+deb10u1
pn  how-can-i-help   
ii  libauthen-sasl-perl  2.1600-1
pn  libdbd-pg-perl   
ii  libfile-desktopentry-perl0.22-1
pn  libnet-smtps-perl
pn  libterm-size-perl
ii  libtimedate-perl 2.3000-2
pn  libyaml-syck-perl
pn  mozilla-devscripts   
ii  mutt 1.10.1-2.1
ii  openssh-client [ssh-client]  1:7.9p1-10+deb10u1
ii  piuparts 1.0.0+deb10u1
pn  postgresql-client
pn  quilt
pn  ratt 
pn  reprotest
pn  svn-buildpackage 
ii  w3m  0.5.3-37

-- no debconf information

Bug#942660: ipython: Could you package the 7.x version

[Picca Frédéric-Emmanuel]

Package: ipython
Version: 5.8.0-1
Severity: wishlist

Dear Maintainer,

it would be nice if Debian could beneficiate from the latest ipython

thanks for considering

Frederic

-- System Information:
Debian Release: 10.1
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.19.0-6-amd64 (SMP w/2 CPU cores)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages ipython depends on:
ii  python-ipython  5.8.0-1

ipython recommends no packages.

ipython suggests no packages.

-- no debconf information

Bug#940845: [bts]: please allow to use the reportbug smtp

[Picca Frédéric-Emmanuel]

Package: devscripts
Version: 2.19.5+deb10u1
Severity: wishlist

Dear Maintainer,

It is possible to use reportbug via the debian internal smtp server.
It would be nice to allow the same for bts.

cheers

Frederic

-- Package-specific info:

--- /etc/devscripts.conf ---

--- ~/.devscripts ---

-- System Information:
Debian Release: 10.1
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.19.0-6-amd64 (SMP w/2 CPU cores)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages devscripts depends on:
ii  dpkg-dev  1.19.7
ii  fakeroot  1.23-1
ii  file  1:5.35-4
ii  gnupg 2.2.12-1+deb10u1
ii  gnupg22.2.12-1+deb10u1
ii  gpgv  2.2.12-1+deb10u1
ii  libc6 2.28-10
ii  libfile-homedir-perl  1.004-1
ii  libfile-which-perl1.23-1
ii  libipc-run-perl   20180523.0-1
ii  libmoo-perl   2.003004-2
ii  libwww-perl   6.36-2
ii  patchutils0.3.4-2
ii  perl  5.28.1-6
ii  python3   3.7.3-1
ii  sensible-utils0.0.12
ii  wdiff 1.2.2-2+b1

Versions of packages devscripts recommends:
ii  apt 1.8.2
ii  at  3.1.23-1
ii  curl7.64.0-4
ii  dctrl-tools 2.24-3
ii  debian-keyring  2019.02.25
ii  dput1.0.3
ii  equivs  2.2.0
ii  libdistro-info-perl 0.21
ii  libdpkg-perl1.19.7
ii  libencode-locale-perl   1.05-1
ii  libgit-wrapper-perl 0.048-1
pn  libgitlab-api-v4-perl   
ii  liblist-compare-perl0.53-1
ii  liblwp-protocol-https-perl  6.07-2
ii  libsoap-lite-perl   1.27-1
ii  libstring-shellquote-perl   1.04-1
ii  libtry-tiny-perl0.30-1
ii  liburi-perl 1.76-1
ii  licensecheck3.0.31-3
ii  lintian 2.15.0
ii  man-db  2.8.5-2
ii  patch   2.7.6-3+deb10u1
ii  python3-apt 1.8.4
ii  python3-debian  0.1.35
ii  python3-magic   2:0.4.15-2
ii  python3-requests2.21.0-1
ii  python3-unidiff 0.5.4-1
ii  python3-xdg 0.25-5
ii  strace  4.26-0.2
ii  unzip   6.0-23+deb10u1
ii  wget1.20.1-1.1
ii  xz-utils5.2.4-1

Versions of packages devscripts suggests:
ii  adequate 0.15.2
ii  autopkgtest  5.10
pn  bls-standalone   
ii  build-essential  12.6
pn  check-all-the-things 
pn  cvs-buildpackage 
ii  debhelper12.1.1
pn  devscripts-el
pn  diffoscope   
pn  disorderfs   
pn  dose-extra   
pn  duck 
pn  faketime 
ii  gnuplot-qt [gnuplot] 5.2.6+dfsg1-1+deb10u1
pn  how-can-i-help   
ii  libauthen-sasl-perl  2.1600-1
pn  libdbd-pg-perl   
ii  libfile-desktopentry-perl0.22-1
ii  libnet-smtps-perl0.09-1
pn  libterm-size-perl
ii  libtimedate-perl 2.3000-2
pn  libyaml-syck-perl
ii  mailutils [mailx]1:3.5-3
pn  mozilla-devscripts   
ii  mutt 1.10.1-2.1
ii  openssh-client [ssh-client]  1:7.9p1-10
ii  piuparts 1.0.0+deb10u1
pn  postgresql-client
ii  quilt0.65-3
pn  ratt 
pn  reprotest
pn  svn-buildpackage 
pn  w3m  

-- no debconf information

Bug#939632: blhc: false positives with Python cython Compiling

[Picca Frédéric-Emmanuel]

Package: blhc
Severity: normal

Dear Maintainer,

When using cythonizing .pyx files, we got this message from blhc.

718:NONVERBOSE BUILD: Compiling pyzoltan/core/carray.pyx because it changed.
719:NONVERBOSE BUILD: Compiling pysph/base/particle_array.pyx because it 
changed.
720:NONVERBOSE BUILD: Compiling pysph/base/point.pyx because it changed.
721:NONVERBOSE BUILD: Compiling pysph/base/nnps_base.pyx because it changed.
722:NONVERBOSE BUILD: Compiling pysph/base/linked_list_nnps.pyx because it 
changed.
723:NONVERBOSE BUILD: Compiling pysph/base/box_sort_nnps.pyx because it changed.
724:NONVERBOSE BUILD: Compiling pysph/base/spatial_hash_nnps.pyx because it 
changed.
725:NONVERBOSE BUILD: Compiling pysph/base/cell_indexing_nnps.pyx because it 
changed.
726:NONVERBOSE BUILD: Compiling pysph/base/z_order_nnps.pyx because it changed.
727:NONVERBOSE BUILD: Compiling pysph/base/stratified_hash_nnps.pyx because it 
changed.
728:NONVERBOSE BUILD: Compiling pysph/base/stratified_sfc_nnps.pyx because it 
changed.
729:NONVERBOSE BUILD: Compiling pysph/base/octree.pyx because it changed.
730:NONVERBOSE BUILD: Compiling pysph/base/octree_nnps.pyx because it changed.
731:NONVERBOSE BUILD: Compiling pysph/base/c_kernels.pyx because it changed.
732:NONVERBOSE BUILD: Compiling pysph/base/linalg3.pyx because it changed.
733:NONVERBOSE BUILD: Compiling pysph/tools/geometry_stl.pyx because it changed.


If everythings goes right, it just inform the user that he compiled .pyx ->  .c 
files
If something goes wrong it will print messages.

so it seems to me that this is a false positiv.

thanks for considering

-- System Information:
Debian Release: 10.0
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.19.0-5-amd64 (SMP w/2 CPU cores)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages blhc depends on:
ii  libdpkg-perl  1.19.7

blhc recommends no packages.

blhc suggests no packages.

Bug#912755: cannot access file /etc/alsa/conf.d/10-rate-lav.conf

[Picca Frédéric-Emmanuel]

Package: alsa-utils
Version: 1.1.7-1
Severity: important

Hello, when I run alsamixer, I get this error message

$ LANG=C alsamixer
ALSA lib conf.c:3639:(config_file_open) cannot access file 
/etc/alsa/conf.d/10-rate-lav.conf
ALSA lib conf.c:3559:(snd_config_hooks_call) function snd_config_hook_load 
returned error: No such file or directory
ALSA lib conf.c:4013:(snd_config_update_r) hooks failed, removing configuration
cannot open mixer: No such file or directory


I looked at the /etc files and it seems that there is a bunch of broken links

$ cd /etc/alsa/conf.d/
:/etc/alsa/conf.d$ ls -l
total 4
lrwxrwxrwx 1 root root  44 nov.   3 00:35 10-rate-lav.conf -> 
/usr/share/alsa/alsa.conf.d/10-rate-lav.conf
lrwxrwxrwx 1 root root  46 nov.   3 00:35 10-samplerate.conf -> 
/usr/share/alsa/alsa.conf.d/10-samplerate.conf
lrwxrwxrwx 1 root root  45 nov.   3 00:35 10-speexrate.conf -> 
/usr/share/alsa/alsa.conf.d/10-speexrate.conf
lrwxrwxrwx 1 root root  48 nov.   3 00:35 50-arcam-av-ctl.conf -> 
/usr/share/alsa/alsa.conf.d/50-arcam-av-ctl.conf
lrwxrwxrwx 1 root root  40 nov.   3 00:35 50-jack.conf -> 
/usr/share/alsa/alsa.conf.d/50-jack.conf
lrwxrwxrwx 1 root root  39 nov.   3 00:35 50-oss.conf -> 
/usr/share/alsa/alsa.conf.d/50-oss.conf
lrwxrwxrwx 1 root root  46 nov.   3 00:35 50-pulseaudio.conf -> 
/usr/share/alsa/alsa.conf.d/50-pulseaudio.conf
lrwxrwxrwx 1 root root  47 nov.   3 00:35 60-a52-encoder.conf -> 
/usr/share/alsa/alsa.conf.d/60-a52-encoder.conf
lrwxrwxrwx 1 root root  41 nov.   3 00:35 60-upmix.conf -> 
/usr/share/alsa/alsa.conf.d/60-upmix.conf
lrwxrwxrwx 1 root root  44 nov.   3 00:35 60-vdownmix.conf -> 
/usr/share/alsa/alsa.conf.d/60-vdownmix.conf
lrwxrwxrwx 1 root root  46 nov.   3 00:35 98-usb-stream.conf -> 
/usr/share/alsa/alsa.conf.d/98-usb-stream.conf
-rw-r--r-- 1 root root 201 nov.   3 00:35 99-pulseaudio-default.conf.example


all but 99 are broken

And Indeed I have no sound.

cheers


-- System Information:
Debian Release: buster/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 4.18.0-2-686 (SMP w/1 CPU core)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages alsa-utils depends on:
ii  dialog1.3-20181022-1
ii  kmod  25-1
ii  libasound21.1.7-1
ii  libc6 2.27-8
ii  libfftw3-single3  3.3.8-2
ii  libncursesw6  6.1+20181013-1
ii  libsamplerate00.1.9-2
ii  libtinfo6 6.1+20181013-1
ii  lsb-base  9.20170808
ii  whiptail  0.52.20-8

alsa-utils recommends no packages.

alsa-utils suggests no packages.

-- debconf-show failed

Bug#909379: segfault when leaving the python3-dbg interpreter

[Picca Frédéric-Emmanuel]

Package: python3-pyopencl-dbg
Version: 2018.1.1-2
Severity: important


hello, I was struggling on an autopkgtest failure forone of my packages (pymca)
At the end I findout that the problem comes from pyopencl.
When I try to import pyopencl, I get this.

$ python3.7-dbg -c "import pyopencl"
/usr/lib/python3/dist-packages/pkg_resources/_vendor/pyparsing.py:943: 
DeprecationWarning: Using or importing the ABCs from 'collections' instead of 
from 'collections.abc' is deprecated, and in 3.8 it will stop working
  collections.MutableMapping.register(ParseResults)
/usr/lib/python3/dist-packages/pkg_resources/_vendor/pyparsing.py:3245: 
DeprecationWarning: Using or importing the ABCs from 'collections' instead of 
from 'collections.abc' is deprecated, and in 3.8 it will stop working
  elif isinstance( exprs, collections.Iterable ):
/usr/lib/python3.7/importlib/_bootstrap_external.py:434: ImportWarning: Not 
importing directory /usr/lib/python3/dist-packages/logilab: missing __init__
  _warnings.warn(msg.format(portions[0]), ImportWarning)
* ob
object  : 
type: tuple
refcount: 0
address : 0xb5f507a4
* op->_ob_prev->_ob_next
object  : Erreur de segmentation


but it works with python3.7

$python3.7 -c "import pyopencl"


no segfault.

thanks for considering

Frederic

-- System Information:
Debian Release: buster/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 4.18.0-1-686 (SMP w/1 CPU core)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages python3-pyopencl-dbg depends on:
ii  libc6   2.27-6
ii  libgcc1 1:8.2.0-7
ii  libstdc++6  8.2.0-7
ii  ocl-icd-libopencl1 [libopencl1] 2.2.12-1
ii  python3-cffi-backend-dbg1.11.5-3
ii  python3-dbg 3.6.6-1
ii  python3-numpy [python3-numpy-abi9]  1:1.14.5-1+b1
ii  python3-pyopencl2018.1.1-2

python3-pyopencl-dbg recommends no packages.

python3-pyopencl-dbg suggests no packages.

-- debconf-show failed

Bug#905324: please provide badges for upsteam documentation

[Picca Frédéric-Emmanuel]

Source: autodeb
Severity: wishlist

Hello,

I do not know if this is the right place to report this but I will do it :). 
First a big thanks for this project to all the team involved.


It seesm to me that it would be a great addition for autodeb (and Debian) to 
propose a badge which could be added to the documentation of the website of the 
upstreams (Opt-In). this way upsteam would 
have a direct feedback that something is ok or not in their last release. They 
could try to fix it by themself when possible. (like they do with another well 
known multi system distribution).

thanks for considering

Frederic

-- System Information:
Debian Release: buster/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 4.17.0-1-686 (SMP w/1 CPU core)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Bug#905194: python-greenlet: please revert removing of -dbg packages

[Picca Frédéric-Emmanuel]

Source: python-greenlet
Severity: wishlist

Dear Maintainer,

In the version python-greenlet (0.4.13-1) unstable; urgency=medium

we can read this

- remove python{,3}-greenlet-dbg packages and use the auto-generated ones.

but for python these -dbg package are not equivalent to the autogenerated
-dbgsym packages.
these -dbg packages are meant to be used wuth the pyton[3]-dbg interpreter.

So please considere reverting this change.

Cheers

Frederic

-- System Information:
Debian Release: 9.5
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'stable')
Architecture: i386 (i686)

Kernel: Linux 4.9.0-6-686-pae (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Bug#905192: RuntimeWarning: greenlet.greenlet size changed, may indicate binary incompatibility.

[Picca Frédéric-Emmanuel]

Source: python-greenlet
Severity: normal

Dear Maintainer,

while preparing my pytango package for the python3.7 transition.
I get this message during the build of pytango[1]


/usr/lib/python3.7/importlib/_bootstrap.py:219: RuntimeWarning: 
greenlet.greenlet size changed, may indicate binary incompatibility. Expected 
72, got 64
  return f(*args, **kwds)
/usr/lib/python3.7/importlib/_bootstrap.py:219: RuntimeWarning: 
greenlet.greenlet size changed, may indicate binary incompatibility. Expected 
72, got 64
  return f(*args, **kwds)
/usr/lib/python3.7/importlib/_bootstrap.py:219: RuntimeWarning: 
greenlet.greenlet size changed, may indicate binary incompatibility. Expected 
72, got 64
  return f(*args, **kwds)
/usr/lib/python3.7/importlib/_bootstrap.py:219: RuntimeWarning: 
greenlet.greenlet size changed, may indicate binary incompatibility. Expected 
72, got 64
  return f(*args, **kwds)


Cheers

Frederic

[1] 
https://buildd.debian.org/status/fetch.php?pkg=pytango&arch=i386&ver=9.2.4-2&stamp=1533070318&raw=0


-- System Information:
Debian Release: 9.5
  APT prefers stable-debug
  APT policy: (500, 'stable-debug'), (500, 'stable')
Architecture: i386 (i686)

Kernel: Linux 4.9.0-6-686-pae (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Bug#904211: Please switch to pybuild

[Picca Frédéric-Emmanuel]

Package: cython
Version: 0.28.2-4
Severity: wishlist

Hello,

It would be great if cython could use pybuild. It seems to me that it
should ease the packaging and avoid these -dbg issues.

thanks for considering.

Frederic


-- System Information:
Debian Release: buster/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 4.17.0-1-686 (SMP w/1 CPU core)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages cython depends on:
ii  libc6   2.27-5
ii  python  2.7.15-3

Versions of packages cython recommends:
ii  gcc 4:8.1.0-1
ii  python-dev  2.7.15-3

Versions of packages cython suggests:
pn  cython-doc  

-- no debconf information

Bug#903909: ImportError: cannot import name LazyUtilityCode

[Picca Frédéric-Emmanuel]

Package: cython-dbg
Severity: important


Hello,

while preparingmy python-fabio packages, I got htis error message.

It seems to me that something is wrong in the cython-dbg packages.

Cheers

Frederic

running build_ext
Traceback (most recent call last):
  File "setup.py", line 968, in 
setup_package()
  File "setup.py", line 964, in setup_package
setup(**setup_kwargs)
  File "/usr/lib/python2.7/dist-packages/setuptools/__init__.py", line 129, in 
setup
return distutils.core.setup(**attrs)
  File "/usr/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
  File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
  File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
  File "/usr/lib/python2.7/distutils/command/build.py", line 128, in run
self.run_command(cmd_name)
  File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
  File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
  File "/usr/lib/python2.7/dist-packages/setuptools/command/build_ext.py", line 
78, in run
_build_ext.run(self)
  File "/usr/lib/python2.7/distutils/command/build_ext.py", line 340, in run
self.build_extensions()
  File "setup.py", line 667, in build_extensions
self.patch_extension(ext)
  File "setup.py", line 586, in patch_extension
from Cython.Build import cythonize
  File "/usr/lib/python2.7/dist-packages/Cython/Build/__init__.py", line 1, in 

from .Dependencies import cythonize
  File "/usr/lib/python2.7/dist-packages/Cython/Build/Dependencies.py", line 
36, in 
from ..Compiler.Main import Context, CompilationOptions, default_options
  File "/usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py", line 30, in 

from .Symtab import ModuleScope
  File "/usr/lib/python2.7/dist-packages/Cython/Compiler/Symtab.py", line 19, 
in 
from . import PyrexTypes
  File "/usr/lib/python2.7/dist-packages/Cython/Compiler/PyrexTypes.py", line 
17, in 
from .Code import UtilityCode, LazyUtilityCode, TempitaUtilityCode
ImportError: cannot import name LazyUtilityCode
E: pybuild pybuild:336: build: plugin distutils failed with: exit code=1: 
/usr/bin/python-dbg setup.py build


-- System Information:
Debian Release: buster/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 4.16.0-2-686 (SMP w/1 CPU core)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages cython-dbg depends on:
ii  cython  0.28.2-4
ii  libc6   2.27-4

cython-dbg recommends no packages.

cython-dbg suggests no packages.

Bug#890038: cylc gui does not work

[Picca Frédéric-Emmanuel]

Package: cylc
Version: 7.5.0-4
Severity: normal

Dear Maintainer,

I managed to install the /usr/bin/cylc wrapper from the upstream source, but 
now I am facing this

picca@mordor:~/Debian/cylc/cylc$ cylc gui
[Errno 2] Aucun fichier ou dossier de ce type: 
'/usr/lib/python2.7/conf/gcylcrc/themes.rc'

gcylc does not find the rc files at the right place.



Cheers

Frederic

-- System Information:
Debian Release: buster/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 4.14.0-3-686 (SMP w/1 CPU core)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages cylc depends on:
ii  at   3.1.20-3.1
ii  perl 5.26.1-4+b1
ii  python   2.7.14-4
ii  python-cylc  7.5.0-4
ii  sqlite3  3.22.0-1

cylc recommends no packages.

cylc suggests no packages.

-- no debconf information

Bug#890020: /usr/bin/cylc: No such file or directory

[Picca Frédéric-Emmanuel]

Package: cylc
Version: 7.5.0-3
Severity: important

Dear Maintainer,


When I try to execute gcylc, I get this error message

picca@mordor:~$ LANG=C gcylc
/usr/bin/gcylc: line 19: /usr/bin/cylc: No such file or directory


this is strance since using dpkg -L cylc gives

[...]
/usr/bin/cycl
/usr/bin/cylc
/usr/bin/gcapture
/usr/bin/gcontrol
/usr/bin/gcylc
/usr/share/cylc/examples/admin


but after installation I have this
picca@mordor:~$ /usr/bin/cy
cycl cygdbcygdb3   cypher-lint  cython   cython3

no cylc 


Cheers


Frederic

-- System Information:
Debian Release: buster/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 4.14.0-3-686 (SMP w/1 CPU core)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages cylc depends on:
ii  at   3.1.20-3.1
ii  perl 5.26.1-4+b1
ii  python   2.7.14-4
ii  python-cylc  7.5.0-3
ii  sqlite3  3.22.0-1

cylc recommends no packages.

cylc suggests no packages.

-- no debconf information

Bug#884519: pyopencl: Please upgrade to at least 2017.2.1

[Picca Frédéric-Emmanuel]

Source: pyopencl
Severity: wishlist

Dear Maintainer,

I am the maintainer of a bunch of package which use pyopencl (silx,
pyfai).  I found that these packages autopkgtest could failed due to
pyopencl

Jerome Kieffer did the fix in pyopencl and are now included in the
2017.2.1 version.

Could you package it in order to check that it solves the problem for real.

thanks a lot.

Frederic


-- System Information:
Debian Release: buster/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 4.14.0-1-686 (SMP w/1 CPU core)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Bug#883718: python-h5py: Could you provide a backports for jessie

[Picca Frédéric-Emmanuel]

Package: python-h5py
Version: 2.7.1-2
Severity: wishlist

Dear Maintainer,

I need to maintain jessie backports of a bunch of packages python-fabio, silx, 
pyfai etc...
The current problem I am facing, is the lake of python[3]-h5py-dbg packages in 
the jessie version.

Could you be so kind and add a jessie-backports which contain these 
python[3]-h5py-dbg
packages.

thanks a lot

Frederic

-- System Information:
Debian Release: buster/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 4.14.0-1-686 (SMP w/1 CPU core)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages python-h5py depends on:
ii  libc6 2.25-3
ii  libhdf5-100   1.10.0-patch1+docs-4
ii  python2.7.14-1
ii  python-numpy [python-numpy-abi9]  1:1.13.3-1
ii  python-six1.11.0-1

python-h5py recommends no packages.

Versions of packages python-h5py suggests:
pn  python-h5py-doc  

-- debconf-show failed

Bug#871637: ITP: silx -- Toolbox for X-Ray data analysis

[Picca Frédéric-Emmanuel]

Package: wnpp
Severity: wishlist
Owner: =?utf-8?q?Picca_Fr=C3=A9d=C3=A9ric-Emmanuel?= 

* Package name: silx
  Version : 0.5.0
  Upstream Author : European Synchrotron Radiation Facility Data analysis unit 
(s...@esrf.fr)
* URL : https://github.com/silx-kit/silx
* License : LGPL, MIT
  Programming Lang: Python
  Description : Toolbox for X-Ray data analysis

 The silx project aims at providing a collection of Python packages to
 support the development of data assessment, reduction and analysis
 applications at synchrotron radiation facilities. It aims at
 providing reading/writing different file formats, data reduction
 routines and a set of Qt widgets to browse and visualize data.
 .
 The current version provides :
 .
  * reading HDF5 file format (with support of SPEC file format)
  * histogramming
  * fitting
  * 1D and 2D visualization using multiple backends (matplotlib or OpenGL)
  * image plot widget with a set of associated tools (See changelog file).
  * Unified browser for HDF5, SPEC and image file formats supporting inspection
and visualization of n-dimensional datasets.
  * Unified viewer (silx view filename) for HDF5, SPEC and image file formats
  * OpenGL-based widget to display 3D scalar field with
isosurface and cutting plane.

I need to package this because it is a new dependency for PyFAI and the next 
Pymca

Bug#806790: autopep8: Please package the latest 1.2.1 version and provide a python3 package

[Picca Frédéric-Emmanuel]

Source: autopep8
Severity: wishlist

Dear Maintainer,

It would be great if you could upload a newer version of autopep8.
Even better provide a python3 package.

Thanks

Frederic


-- System Information:
Debian Release: 8.2
  APT prefers stable
  APT policy: (500, 'stable')
Architecture: i386 (i686)

Kernel: Linux 3.16.0-4-686-pae (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Bug#806409: tango-db: problem, in the tango-db logic in order to extract the tango host

[Picca Frédéric-Emmanuel]

Package: tango-db
Version: 8.1.2c+dfsg-5
Severity: normal

Dear Maintainer,

Hello just read the forwarded bug


-- System Information:
Debian Release: 8.2
  APT prefers stable
  APT policy: (500, 'stable')
Architecture: i386 (i686)

Kernel: Linux 3.16.0-4-686-pae (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages tango-db depends on:
ii  dbconfig-common1.8.47+nmu3
ii  debconf [debconf-2.0]  1.5.56
ii  libc6  2.19-18+deb8u1
ii  libcos4-1  4.1.6-2
ii  libgcc11:4.9.2-10
ii  liblog4tango5  8.1.2c+dfsg-5
ii  libmysqlclient18   5.5.46-0+deb8u1
ii  libomniorb4-1  4.1.6-2
ii  libomnithread3c2   4.1.6-2
ii  libstdc++6 4.9.2-10
ii  libtango-tools 8.1.2c+dfsg-5
ii  libtango8  8.1.2c+dfsg-5
ii  libzmq34.0.5+dfsg-2+deb8u1
ii  lsb-base   4.1+Debian13+nmu1
ii  zlib1g 1:1.2.8.dfsg-2+b1

Versions of packages tango-db recommends:
ii  mysql-client 5.5.46-0+deb8u1
ii  mysql-client-5.5 [mysql-client]  5.5.46-0+deb8u1

tango-db suggests no packages.

-- debconf information:
  tango-db/dbconfig-upgrade: true
* tango-db/dbconfig-install: true
* tango-db/mysql/method: unix socket
  tango-db/passwords-do-not-match:
  tango-db/remote/port:
* tango-db/db/app-user: tango
  tango-db/remote/host:
  tango-db/dbconfig-reinstall: false
  tango-db/upgrade-error: abort
  tango-db/database-type: mysql
  tango-db/internal/reconfiguring: false
  tango-db/remove-error: abort
* tango-db/mysql/admin-user: root
  tango-db/upgrade-backup: true
  tango-db/dbconfig-remove:
  tango-db/purge: false
  tango-db/internal/skip-preseed: false
  tango-db/missing-db-package-error: abort
  tango-db/remote/newhost:
* tango-db/db/dbname: tango
  tango-db/install-error: retry

Bug#798929: libdvd-pkg: could you backport it for jessie

[Picca Frédéric-Emmanuel]

Package: libdvd-pkg
Severity: wishlist

Dear Maintainer,

It would be great if we could install your package on Debian jessie.

So would you considere backporting it.

Thanks

Frederic


-- System Information:
Debian Release: 8.2
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: i386 (i686)

Kernel: Linux 3.16.0-4-686-pae (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Bug#797069: spyder: QT_API 1 -> 2 migration broke reverse dependencies

[Picca Frédéric-Emmanuel]

Package: spyder
Version: 2.3.1+dfsg-1
Severity: important

Dear Maintainer,

Just to avoid migration into testing.

Once all reverse dependencies will be fixed, it will be possible to migrate 
spyder

*** Reporter, please consider answering these questions, where appropriate ***

   * What led up to the situation?
   * What exactly did you do (or not do) that was effective (or
 ineffective)?
   * What was the outcome of this action?
   * What outcome did you expect instead?

*** End of the template - remove these template lines ***


-- System Information:
Debian Release: 8.1
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: i386 (i686)

Kernel: Linux 3.16.0-4-686-pae (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages spyder depends on:
ii  python2.7.9-1
ii  python-spyderlib  2.3.1+dfsg-1
pn  python:any

spyder recommends no packages.

spyder suggests no packages.

Versions of packages python-spyderlib depends on:
ii  libjs-jquery   1.7.2+dfsg-3.2
ii  libjs-mathjax  2.4-2
ii  python-qt4 4.11.2+dfsg-1
pn  python:any 
ii  spyder-common  2.3.1+dfsg-1

Versions of packages python-spyderlib recommends:
ii  ipython-qtconsole 2.3.0-2
ii  pep8  1.5.7-2
ii  pyflakes  0.8.1-1
ii  pylint1.3.1-3
ii  python-jedi   0.8.1-1
ii  python-matplotlib 1.4.2-3.1
ii  python-numpy  1:1.8.2-2
ii  python-pandas 0.14.1-2
ii  python-psutil 2.1.1-1+b1
ii  python-rope   0.10.2-1
ii  python-scipy  0.14.0-2
ii  python-sphinx 1.2.3+dfsg-1
ii  python-spyderlib-doc  2.3.1+dfsg-1

Versions of packages python-spyderlib suggests:
ii  gitk1:2.1.4-2.1
pn  tortoisehg  

Versions of packages python-qt4 depends on:
ii  libc6  2.19-18
ii  libgcc11:4.9.2-10
ii  libpython2.7   2.7.9-2
ii  libqt4-dbus4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1
ii  libqt4-declarative 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1
ii  libqt4-designer4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1
ii  libqt4-help4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1
ii  libqt4-network 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1
ii  libqt4-script  4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1
ii  libqt4-scripttools 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1
ii  libqt4-svg 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1
ii  libqt4-test4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1
ii  libqt4-xml 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1
ii  libqt4-xmlpatterns 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1
ii  libqtassistantclient4  4.6.3-6
ii  libqtcore4 4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1
ii  libqtgui4  4:4.8.6+git64-g5dc8b2b+dfsg-3+deb8u1
ii  libqtwebkit4   2.3.4.dfsg-3
ii  libstdc++6 4.9.2-10
ii  python 2.7.9-1
ii  python-sip [sip-api-11.1]  4.16.4+dfsg-1

Versions of packages python-qt4 suggests:
pn  python-qt4-dbg  

-- no debconf information

Bug#796955: ITP: python-qwt -- Pure Python implementation of Qwt

[Picca Frédéric-Emmanuel]

Package: wnpp
Severity: wishlist
Owner: "Picca Frédéric-Emmanuel" 

* Package name: python-qwt
  Version : 6.1.2a3
  Upstream Author : Pierre Raybaut 
* URL : https://github.com/PierreRaybaut/qwt
* License : Expat
  Programming Lang: Python
  Description : Pure Python implementation of Qwt

 The qwt package is a pure Python implementation of Qwt C++ library
 with the following limitations.
 .
 The following `Qwt` classes won't be reimplemented in `qwt` because most 
 powerful features already exist in `guiqwt`:
   * QwtPlotZoomer
   * QwtCounter
   * QwtEventPattern
   * QwtPicker
   * QwtPlotPicker
 .
 QwtClipper is not implemented yet (and it will probably be very
 difficult or impossible to implement it in pure Python without
 performance issues).  As a consequence, when zooming in a plot curve,
 the entire curve is still painted (in other words, when working with
 large amount of data, there is no performance gain when zooming in).


This package will be maintain under the debian-science umbrella.
It is a requiered dependency for the new guiqwt package.

Bug#781408: please package the lastest yi version 0.11.2

[Picca Frédéric-Emmanuel]

Source: yi
Severity: wishlist


Hello, thanks for providing yi,

but could you package the lastest version.

thanks for considering

fred

-- System Information:
Debian Release: 8.0
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 3.16.0-4-586
Locale: LANG=fr_CA.UTF-8, LC_CTYPE=fr_CA.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)


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Bug#781369: Invalid field given (Files_Excluded)

[Picca Frédéric-Emmanuel]

Package: license-reconcile
Version: 0.5
Severity: normal


Hello,
I am trying to use license-reconcile for the new version of spyder,
But it stops due to the unknown Files-Excluded field.

It would be nice to make license-reconcile know about this field.
It is used by uscan to create a dfsg free package, or juste to repack in order 
to remove a bunch of
useless files.

Debian/main/spyder/spyder$ license-reconcile
CopyrightParsing: Invalid field given (Files_Excluded) at 
/usr/share/perl5/Debian/Copyright.pm line 123.

Cheers

Fred

-- System Information:
Debian Release: 8.0
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 3.16.0-4-586
Locale: LANG=fr_CA.UTF-8, LC_CTYPE=fr_CA.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages license-reconcile depends on:
ii  devscripts 2.15.1
ii  libclass-xsaccessor-perl   1.19-2+b4
ii  libconfig-any-perl 0.24-1
ii  libdebian-copyright-perl   0.2-1
ii  libdpkg-perl   1.17.24
ii  libemail-address-perl  1.905-2
ii  libfile-fnmatch-perl   0.02-2+b1
ii  libfile-mmagic-perl1.30-1
ii  libfile-slurp-perl .19-4
ii  liblist-moreutils-perl 0.33-2+b1
ii  libparse-debianchangelog-perl  1.2.0-1.1
ii  libreadonly-perl   2.000-1
ii  libset-intspan-perl1.19-1
ii  libsmart-comments-perl 1.05-1
ii  libtext-levenshteinxs-perl 0.03-4+b1
ii  libuniversal-require-perl  0.17-1
ii  perl   5.20.2-2

Versions of packages license-reconcile recommends:
ii  libyaml-libyaml-perl  0.41-6

license-reconcile suggests no packages.

-- no debconf information


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