Nilesh Patra, on 2022-12-01:
> On Tue, 29 Nov 2022 22:30:10 +0100 =?utf-8?Q?=C3=89tienne?= Mollier
> wrote:
> > Control: severity -1 important
> >
> > Hi,
> >
> > I just uploaded python-pysam 0.20 with python3-dev support only
> > for the time being. This can be raised later on when python3.11
> > becomes the default, or a last time when python3.10 is to be
> > dropped.
>
> Unfortunately this is a rabbit hole, and breaks other stuff, see Bug#1025116.
Ouch, I haven't accounted for that. I'm suddenly somewhat
concerned that packages marked "Depends" below can be
potentially affected one way or another, even if not detected as
such by autopkgtest or an archive rebuild (yet):
$ apt rdepends python3-pysam
python3-pysam
Reverse Depends:
Depends: python3-deeptools (>= 0.14.0)
Depends: python3-seqcluster
Depends: python3-bcbio
Depends: yanosim
Depends: umis
Depends: tiddit
Depends: svim
Depends: sniffles
Depends: sga
Depends: python3-sqt
Depends: python3-vcf
Enhances: python-pysam-tests
Depends: python3-pybedtools
Depends: python3-pbcore
Depends: python3-nanoget
Depends: ariba (>= 0.9.1)
Depends: python3-cooler
Depends: pycoqc
Depends: python3-pbsuite-utils
Depends: pbhoney
Depends: paleomix
Depends: optimir
Depends: nanosv
Recommends: nanopolish
Depends: python3-mirtop
Depends: metaphlan
Depends: mcaller
Depends: mapdamage
Depends: lumpy-sv
Depends: iva
Depends: insilicoseq
Depends: python3-htseq
Depends: gasic
Depends: fitgcp
Recommends: med-bio-dev
Suggests: med-bio
Depends: cutesv
Depends: cnvkit
Depends: circlator
Depends: catfishq
Depends: bamkit
Depends: atropos
> Ofcourse, there is a work around for that bug as well (i.e. just test with
> default
> pyvers) but, this would need fixing soonish*
>
> * T applied
I don't expect being able to address the root issue, and I'm
unsure right now how timely I would be able to bring reverse
dependencies into shape to stick to python3.10 yet; possibly
something to do in upcoming python sprint…
Nevertheless, thanks for raising this,
--
Étienne Mollier
Fingerprint: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da
Sent from /dev/pts/4, please excuse my verbosity.
On air: Steve Unruh - challenging
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