Bug#1057518: libgoby-java: FTBFS with default Java 21
Hi, The issue is caused by the outdated version of the byte-buddy. Upgrading it to 1.14 should solve the issue. The issue can be worked around by adding -Dnet.bytebuddy.experimental=true to the argLine in maven-surefire-plugin. Best Regards, Vladimir. On Wed, Dec 27, 2023 at 1:55 PM Vladimir Petko wrote: > Hi, > > I apologise for the late reply. The issue is most likely caused by an > attempt to mock a sealed class in libgoby-java sources[1]. I will try to > prepare a PR to address the issue. > > Best Regards, > Vladimir. > > [1] https://github.com/easymock/easymock/issues/442 >
Bug#1057518: libgoby-java: FTBFS with default Java 21
Hi, I apologise for the late reply. The issue is most likely caused by an attempt to mock a sealed class in libgoby-java sources[1]. I will try to prepare a PR to address the issue. Best Regards, Vladimir. [1] https://github.com/easymock/easymock/issues/442
Bug#1057518: libgoby-java: FTBFS with default Java 21
Source: libgoby-java Version: 3.3.1+dfsg2-9 Severity: important Tags: ftbfs User: debian-j...@lists.debian.org Usertags: default-java21 Dear Maintainers, The package libgoby-java ftbfs with default Java 21. The relevant part of the build log: --- [ERROR] Tests run: 512, Failures: 8, Errors: 0, Skipped: 46, Time elapsed: 51.615 s <<< FAILURE! - in TestSuite [ERROR] testDiscoverSomaticVariation2 on testDiscoverSomaticVariation2(org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat)(org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat) Time elapsed: 0.344 s <<< FAILURE! java.lang.IllegalArgumentException: Could not create type at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.testDiscoverSomaticVariation2(TestSomaticVariationOutputFormat.java:121) Caused by: java.lang.IllegalArgumentException: org.campagnelab.goby.stats.VCFWriter$$$EasyMock$1 must be defined in the same package as org.easymock.internal.ClassProxyFactory at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.testDiscoverSomaticVariation2(TestSomaticVariationOutputFormat.java:121) [ERROR] testDiscoverSomaticVariation3 on testDiscoverSomaticVariation3(org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat)(org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat) Time elapsed: 0.056 s <<< FAILURE! java.lang.IllegalArgumentException: Could not create type at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.testDiscoverSomaticVariation3(TestSomaticVariationOutputFormat.java:218) Caused by: java.lang.IllegalArgumentException: org.campagnelab.goby.stats.VCFWriter$$$EasyMock$2 must be defined in the same package as org.easymock.internal.ClassProxyFactory at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.testDiscoverSomaticVariation3(TestSomaticVariationOutputFormat.java:218) [ERROR] testEstimateSomaticPValue1 on testEstimateSomaticPValue1(org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat)(org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat) Time elapsed: 0.05 s <<< FAILURE! java.lang.IllegalArgumentException: Could not create type at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.assertPWithCounts(TestSomaticVariationOutputFormat.java:84) at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.testEstimateSomaticPValue1(TestSomaticVariationOutputFormat.java:35) Caused by: java.lang.IllegalArgumentException: org.campagnelab.goby.stats.VCFWriter$$$EasyMock$3 must be defined in the same package as org.easymock.internal.ClassProxyFactory at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.assertPWithCounts(TestSomaticVariationOutputFormat.java:84) at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.testEstimateSomaticPValue1(TestSomaticVariationOutputFormat.java:35) [ERROR] testEstimateSomaticPValue2 on testEstimateSomaticPValue2(org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat)(org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat) Time elapsed: 0.04 s <<< FAILURE! java.lang.IllegalArgumentException: Could not create type at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.assertPWithCounts(TestSomaticVariationOutputFormat.java:84) at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.testEstimateSomaticPValue2(TestSomaticVariationOutputFormat.java:48) Caused by: java.lang.IllegalArgumentException: org.campagnelab.goby.stats.VCFWriter$$$EasyMock$4 must be defined in the same package as org.easymock.internal.ClassProxyFactory at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.assertPWithCounts(TestSomaticVariationOutputFormat.java:84) at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.testEstimateSomaticPValue2(TestSomaticVariationOutputFormat.java:48) [ERROR] testEstimateSomaticPValue3 on testEstimateSomaticPValue3(org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat)(org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat) Time elapsed: 0.035 s <<< FAILURE! java.lang.IllegalArgumentException: Could not create type at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.assertPWithCounts(TestSomaticVariationOutputFormat.java:84) at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.testEstimateSomaticPValue3(TestSomaticVariationOutputFormat.java:61) Caused by: java.lang.IllegalArgumentException: org.campagnelab.goby.stats.VCFWriter$$$EasyMock$5 must be defined in the same package as org.easymock.internal.ClassProxyFactory at org.campagnelab.goby.modes.formats.TestSomaticVariationOutputFormat.assertPWithCounts(TestSomaticVariationOutputFormat.java:84) at
