Bug#1067784: Doesn't contain libpmix.so.2
On Fri, Apr 05, 2024 at 11:23:32AM +0200, Drew Parsons wrote: > Looks like 5.0.2-2 annihilated the symlink fix made in 5.0.2-1.1 Simply because 5.0.2-2 doesn't include the 5.0.2-1.1 changes. Alastair, please fix your workflows so that NMUs don't get ignored and overwritten. -- WBR, wRAR signature.asc Description: PGP signature
Bug#1067784: Doesn't contain libpmix.so.2
Package: libpmix2t64 Version: 5.0.2-2 Followup-For: Bug #1067784 Control: affects 1067784 nwchem nwchem-openmpi Control: reopen 1067784 Looks like 5.0.2-2 annihilated the symlink fix made in 5.0.2-1.1 See nwchem tests, https://ci.debian.net/packages/n/nwchem/unstable/amd64/44696719/ 90s Running tests/cosmo_h3co/cosmo_h3co 90s 90s cleaning scratch 90s copying input and verified output files 90s running nwchem (/usr/bin/nwchem) with 1 processors 90s 90s NWChem execution failed 90s [ci-096-a6a59e1f:01975] mca_base_component_repository_open: unable to open mca_pmix_ext3x: libpmix.so.2: cannot open shared object file: No such file or directory (ignored) 90s [ci-096-a6a59e1f:01975] [[33167,0],0] ORTE_ERROR_LOG: Not found in file ../../../../../../orte/mca/ess/hnp/ess_hnp_module.c at line 320 90s -- 90s It looks like orte_init failed for some reason; your parallel process is 90s likely to abort. There are many reasons that a parallel process can 90s fail during orte_init; some of which are due to configuration or 90s environment problems. This failure appears to be an internal failure; 90s here's some additional information (which may only be relevant to an 90s Open MPI developer): 90s 90s opal_pmix_base_select failed 90s --> Returned value Not found (-13) instead of ORTE_SUCCESS -- System Information: Debian Release: trixie/sid APT prefers unstable-debug APT policy: (500, 'unstable-debug'), (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 6.7.9-amd64 (SMP w/8 CPU threads; PREEMPT) Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8), LANGUAGE=en_AU:en Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages libpmix2t64 depends on: ii libc6 2.37-15.1 ii libevent-core-2.1-7t64 2.1.12-stable-8.1+b1 ii libevent-pthreads-2.1-7t64 2.1.12-stable-8.1+b1 ii libhwloc-plugins2.10.0-1+b1 ii libhwloc15 2.10.0-1+b1 ii libmunge2 0.5.15-4 ii zlib1g 1:1.3.dfsg-3.1 libpmix2t64 recommends no packages. libpmix2t64 suggests no packages. -- no debconf information
Bug#1067784: Doesn't contain libpmix.so.2
Package: libpmix2t64 Version: 5.0.2-1 Severity: grave After installing the package there is no /usr/lib/x86_64-linux- gnu/libpmix.so.2. Looking at the contents of .deb, there are: ./usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.13.2 ./usr/lib/x86_64-linux-gnu/libpmix.so.2 -> pmix2/lib/libpmix.so.2.13.1 ./usr/lib/x86_64-linux-gnu/libpmix.so.2.13.1 -> pmix2/lib/libpmix.so.2.13.1 ./usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2 -> libpmix.so.2.13.2 So the symlinks in the public path are broken, and after installing the package they don't even exist at all (I assume ldconfig removes them?). -- System Information: Debian Release: trixie/sid APT prefers unstable-debug APT policy: (500, 'unstable-debug'), (500, 'testing-debug'), (500, 'unstable'), (500, 'testing'), (101, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 6.7.9-amd64 (SMP w/4 CPU threads; PREEMPT) Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages libpmix2t64 depends on: ii libc6 2.37-15.1 ii libevent-core-2.1-7t64 2.1.12-stable-8.1+b1 ii libevent-pthreads-2.1-7t64 2.1.12-stable-8.1+b1 ii libhwloc-plugins2.10.0-1+b1 ii libhwloc15 2.10.0-1+b1 ii libmunge2 0.5.15-4 ii zlib1g 1:1.3.dfsg-3.1 libpmix2t64 recommends no packages. libpmix2t64 suggests no packages. -- no debconf information
