Bug#774109: htslib: FTBFS on hppa
On Fri, Jan 29, 2016 at 02:56:04PM +, Michael Crusoe wrote: > On Wed, 9 Dec 2015 16:47:56 +0100 Andreas Tille wrote: > > Hi, > > > > could you please verify whether this issue remains also for version 1.2.1? > > According to the buildd, it does > https://buildd.debian.org/status/package.php?p=htslib&suite=sid#problem-6 So the most simple solution for this problem would be to exclude those architectures where the build fails (and ask ftpmaster to remove older binaries of these architectures from testing). Forwarding the buildlogs to upstream (if not known that upstream does not care explicitly) might make sense. Extra bonus points for developing patches (may by discussing the issue with the porter teams). Kind regards Andreas. -- http://fam-tille.de
Bug#774109: htslib: FTBFS on hppa
On Wed, 9 Dec 2015 16:47:56 +0100 Andreas Tille wrote: > Hi, > > could you please verify whether this issue remains also for version 1.2.1? According to the buildd, it does https://buildd.debian.org/status/package.php?p=htslib&suite=sid#problem-6 -- Michael R. Crusoe CWL Community Engineer cru...@ucdavis.edu Common Workflow Language projectUniversity of California, Davis https://impactstory.org/MichaelRCrusoe http://twitter.com/biocrusoe
Bug#774109: htslib: FTBFS on hppa
Hi, could you please verify whether this issue remains also for version 1.2.1? Kind regards Andreas. -- http://fam-tille.de
Bug#774109: htslib: FTBFS on hppa
Package: htslib Version: 1.1-1 Severity: normal Tests fail: === Testing aux#aux.sam, ref aux.fa === ./test_view -S -b aux#aux.sam > aux#aux.tmp.bam ./test_view aux#aux.tmp.bam > aux#aux.tmp.bam.sam_ ./compare_sam.pl aux#aux.sam aux#aux.tmp.bam.sam_ ./test_view -t aux.fa -S -C aux#aux.sam > aux#aux.tmp.cram Bus error FAIL Full log: http://buildd.debian-ports.org/status/fetch.php?pkg=htslib&arch=hppa&ver=1.1-1&stamp=1411592339 hppa is big endian. The cram_encode.c portion of the mips 01-fix-endianness.patch patch fixes this bus error. However, the sam.c portion no longer applies. With the 01-fix-endianness.patch patch, things fail here: Failures 0 cd test && ./test.pl test_vcf_api: /«PKGBUILDDIR»/test/test-vcf-api /tmp/hzVl69JfEW/test-vcf-api.bcf The outputs differ: /«PKGBUILDDIR»/test/test-vcf-api.out /«PKGBUILDDIR»/test/test-vcf-api.out.new .. failed ... -- System Information: Debian Release: 8.0 APT prefers unreleased APT policy: (500, 'unreleased'), (500, 'unstable') Architecture: hppa (parisc64) Kernel: Linux 3.17.7+ (SMP w/4 CPU cores) Locale: LANG=C, LC_CTYPE=C (charmap=UTF-8) (ignored: LC_ALL set to en_CA.utf8) Shell: /bin/sh linked to /bin/dash Init: sysvinit (via /sbin/init) -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
