Subject: scilab: ATOMS system is broken in Scilab 6 on buster Package: scilab Version: 6.0.1-1 Severity: important
Steps to reproduce: 1. Install Debian 10 (x86_64 in my case) 2. Install `scilab` package (from buster or from unstable) 3. Launch Scilab from terminal with `scilab` 4. Try to show information of a package from ATOMS system with `atomsShow('coselica')` Expected results: * Scilab updates local ATOMS cache, then shows information about Coselica toolbox Actual results: * Scilab shows error in its console: Startup execution: loading initial environment --> atomsShow('coselica') Scanning repository http://atoms.scilab.org/6.0 ... Done at line 265 of function atomsDESCRIPTIONget ( /usr/share/scilab/modules/atoms/macros/atoms_internals/atomsDESCRIPTIONget.sci line 284 ) at line 31 of function atomsIsPackage ( /usr/share/scilab/modules/atoms/macros/atoms_internals/atomsIsPackage.sci line 47 ) at line 43 of function atomsShow ( /usr/share/scilab/modules/atoms/macros/atomsShow.sci line 59 ) atomsDESCRIPTIONget: save ('/home/debian/.Scilab/scilab-6.0.1/.atoms/packages') has failed. and in terminal: HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 140556419344320: #000: ../../../src/H5G.c line 553 in H5Gget_info(): invalid argument major: Invalid arguments to routine minor: Bad value HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 140556419344320: #000: ../../../src/H5G.c line 301 in H5Gcreate2(): not a location major: Invalid arguments to routine minor: Inappropriate type #001: ../../../src/H5Gloc.c line 253 in H5G_loc(): invalid object ID major: Invalid arguments to routine minor: Bad value HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 140556419344320: #000: ../../../src/H5A.c line 265 in H5Acreate2(): not a location major: Invalid arguments to routine minor: Inappropriate type #001: ../../../src/H5Gloc.c line 253 in H5G_loc(): invalid object ID major: Invalid arguments to routine minor: Bad value HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 140556419344320: #000: ../../../src/H5D.c line 121 in H5Dcreate2(): not a location ID major: Invalid arguments to routine minor: Inappropriate type #001: ../../../src/H5Gloc.c line 253 in H5G_loc(): invalid object ID major: Invalid arguments to routine minor: Bad value HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 140556419344320: #000: ../../../src/H5F.c line 749 in H5Fclose(): not a file ID major: Invalid arguments to routine minor: Inappropriate type failed to close file -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable'), (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 4.15.0-2-amd64 (SMP w/1 CPU core) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE=en_US:en (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages scilab depends on: ii scilab-cli 6.0.1-1 ii scilab-full-bin 6.0.1-1 Versions of packages scilab recommends: ii scilab-doc 6.0.1-1 Versions of packages scilab suggests: pn scilab-doc-fr <none> pn scilab-doc-ja <none> pn scilab-doc-pt-br <none> -- no debconf information