Bug#899129: error: 'char16_t' does not name a type; did you mean 'wchar_t'? (Was: Bug#899129: prime-phylo: FTBFS: cd obj-x86_64-linux-gnu && make -j8 -Oline returned exit code 2)

2018-05-20 Thread Adrian Bunk
Control: tags -1 - help moreinfo

On Sun, May 20, 2018 at 09:05:48AM +0200, Andreas Tille wrote:
> Control: tags -1 help
> 
> Hi,
> 
> the build log of prime-phylo[1] has:
> 
> ...
> cd /build/prime-phylo-1.0.11/obj-x86_64-linux-gnu/src/cxx/libraries/prime && 
> /usr/bin/c++  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS 
> -I/build/prime-phylo-1.0.11/obj-x86_64-linux-gnu/src/cxx/libraries/prime 
> -I/build/prime-phylo-1.0.11/src/cxx/libraries/prime 
> -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 
> -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/  
> lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 
> -I/build/prime-phylo-1.0.11/src/cxx/libraries 
> -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx 
> -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx  -g -O2 
> -fdebug-prefix-map=/build/prime-phylo-1.0.11=. -fstack-protector-strong 
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -
> Wreorder -Wall -fexceptions -g -fPIC   -std=gnu++98 -o 
> CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o -c 
> /build/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeInputOutput.cc
> In file included from /usr/include/unicode/utypes.h:38:0,
>  from /usr/include/unicode/ucnv_err.h:88,
>  from /usr/include/unicode/ucnv.h:52,
>  from /usr/include/libxml2/libxml/encoding.h:31,
>  from /usr/include/libxml2/libxml/parser.h:810,
>  from /usr/include/libxml2/libxml/globals.h:18,
>  from /usr/include/libxml2/libxml/threads.h:35,
>  from /usr/include/libxml2/libxml/xmlmemory.h:218,
>  from /usr/include/libxml2/libxml/tree.h:1307,
>  from 
> /build/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeInputOutput.hh:9,
>  from 
> /build/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeInputOutput.cc:1:
> /usr/include/unicode/umachine.h:347:13: error: 'char16_t' does not name a 
> type; did you mean 'wchar_t'?
>  typedef char16_t UChar;
>  ^~~~
>  wchar_t
> In file included from /usr/include/unicode/utypes.h:39:0,
>  from /usr/include/unicode/ucnv_err.h:88,
>  from /usr/include/unicode/ucnv.h:52,
>  from /usr/include/libxml2/libxml/encoding.h:31,
>  from /usr/include/libxml2/libxml/parser.h:810,
>  from /usr/include/libxml2/libxml/globals.h:18,
>  from /usr/include/libxml2/libxml/threads.h:35,
>  from /usr/inclmake[3]: Entering directory 
> '/build/prime-phylo-1.0.11/obj-x86_64-linux-gnu'
> ...
> 
> and similar things.  Any idea how to fix this?

Remove fix-gcc-6.patch, instead of it add
  export DEB_CXXFLAGS_MAINT_APPEND = -fpermissive
to debian/rules.

> Kind regards
> 
>Andreas.
>...

cu
Adrian

-- 

   "Is there not promise of rain?" Ling Tan asked suddenly out
of the darkness. There had been need of rain for many days.
   "Only a promise," Lao Er said.
   Pearl S. Buck - Dragon Seed



Bug#899129: error: 'char16_t' does not name a type; did you mean 'wchar_t'? (Was: Bug#899129: prime-phylo: FTBFS: cd obj-x86_64-linux-gnu && make -j8 -Oline returned exit code 2)

2018-05-20 Thread Rene Engelhard
On Sun, May 20, 2018 at 12:20:05PM +0500, Andrey Rahmatullin wrote:
> On Sun, May 20, 2018 at 09:05:48AM +0200, Andreas Tille wrote:
> > cd /build/prime-phylo-1.0.11/obj-x86_64-linux-gnu/src/cxx/libraries/prime 
> > && /usr/bin/c++  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE 
> > -Dprime_phylo_EXPORTS 
> > -I/build/prime-phylo-1.0.11/obj-x86_64-linux-gnu/src/cxx/libraries/prime 
> > -I/build/prime-phylo-1.0.11/src/cxx/libraries/prime 
> > -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 
> > -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/  
> > lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 
> > -I/build/prime-phylo-1.0.11/src/cxx/libraries 
> > -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx 
> > -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx  -g -O2 
> > -fdebug-prefix-map=/build/prime-phylo-1.0.11=. -fstack-protector-strong 
> > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -
> > Wreorder -Wall -fexceptions -g -fPIC   -std=gnu++98 -o 
> > CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o -c 
> > /build/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeInputOutput.cc
> 
> > /usr/include/unicode/umachine.h:347:13: error: 'char16_t' does not name a 
> > type; did you mean 'wchar_t'?
> ICU since 59 requires C++11 while your software uses -std=gnu++98.

Otherwise you can just define it. See e.g.

https://cgit.freedesktop.org/libreoffice/core/diff/configure.ac?id=fabad007c60958f2ff87e8f636ff6a798ad1f963

+if test "$ICU_MAJOR" -ge "59"; then
+# As of ICU 59 it defaults to typedef char16_t UChar; which is
available
+# with -std=c++11 but not all external libraries can be built with
that,
+# for those use a bit-compatible typedef uint16_t UChar; see
+# icu/source/common/unicode/umachine.h
+ICU_UCHAR_TYPE="-DUCHAR_TYPE=uint16_t"
+else
+ICU_UCHAR_TYPE=""
+fi

(but yes, projects using -std=c++11 don't need it.)

Regards,

Rene



Bug#899129: error: 'char16_t' does not name a type; did you mean 'wchar_t'? (Was: Bug#899129: prime-phylo: FTBFS: cd obj-x86_64-linux-gnu && make -j8 -Oline returned exit code 2)

2018-05-20 Thread Andrey Rahmatullin
On Sun, May 20, 2018 at 09:05:48AM +0200, Andreas Tille wrote:
> cd /build/prime-phylo-1.0.11/obj-x86_64-linux-gnu/src/cxx/libraries/prime && 
> /usr/bin/c++  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS 
> -I/build/prime-phylo-1.0.11/obj-x86_64-linux-gnu/src/cxx/libraries/prime 
> -I/build/prime-phylo-1.0.11/src/cxx/libraries/prime 
> -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 
> -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/  
> lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 
> -I/build/prime-phylo-1.0.11/src/cxx/libraries 
> -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx 
> -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx  -g -O2 
> -fdebug-prefix-map=/build/prime-phylo-1.0.11=. -fstack-protector-strong 
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -
> Wreorder -Wall -fexceptions -g -fPIC   -std=gnu++98 -o 
> CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o -c 
> /build/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeInputOutput.cc

> /usr/include/unicode/umachine.h:347:13: error: 'char16_t' does not name a 
> type; did you mean 'wchar_t'?
ICU since 59 requires C++11 while your software uses -std=gnu++98.

-- 
WBR, wRAR


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Bug#899129: error: 'char16_t' does not name a type; did you mean 'wchar_t'? (Was: Bug#899129: prime-phylo: FTBFS: cd obj-x86_64-linux-gnu && make -j8 -Oline returned exit code 2)

2018-05-20 Thread Andreas Tille
Control: tags -1 help

Hi,

the build log of prime-phylo[1] has:

...
cd /build/prime-phylo-1.0.11/obj-x86_64-linux-gnu/src/cxx/libraries/prime && 
/usr/bin/c++  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS 
-I/build/prime-phylo-1.0.11/obj-x86_64-linux-gnu/src/cxx/libraries/prime 
-I/build/prime-phylo-1.0.11/src/cxx/libraries/prime 
-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 
-I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/  
lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 
-I/build/prime-phylo-1.0.11/src/cxx/libraries 
-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx 
-I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx  -g -O2 
-fdebug-prefix-map=/build/prime-phylo-1.0.11=. -fstack-protector-strong 
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder 
-Wall -fexceptions -g -fPIC   -std=gnu++98 -o 
CMakeFiles/prime-phylo.dir/TreeInputOutput.cc.o -c 
/build/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeInputOutput.cc
In file included from /usr/include/unicode/utypes.h:38:0,
 from /usr/include/unicode/ucnv_err.h:88,
 from /usr/include/unicode/ucnv.h:52,
 from /usr/include/libxml2/libxml/encoding.h:31,
 from /usr/include/libxml2/libxml/parser.h:810,
 from /usr/include/libxml2/libxml/globals.h:18,
 from /usr/include/libxml2/libxml/threads.h:35,
 from /usr/include/libxml2/libxml/xmlmemory.h:218,
 from /usr/include/libxml2/libxml/tree.h:1307,
 from 
/build/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeInputOutput.hh:9,
 from 
/build/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeInputOutput.cc:1:
/usr/include/unicode/umachine.h:347:13: error: 'char16_t' does not name a type; 
did you mean 'wchar_t'?
 typedef char16_t UChar;
 ^~~~
 wchar_t
In file included from /usr/include/unicode/utypes.h:39:0,
 from /usr/include/unicode/ucnv_err.h:88,
 from /usr/include/unicode/ucnv.h:52,
 from /usr/include/libxml2/libxml/encoding.h:31,
 from /usr/include/libxml2/libxml/parser.h:810,
 from /usr/include/libxml2/libxml/globals.h:18,
 from /usr/include/libxml2/libxml/threads.h:35,
 from /usr/inclmake[3]: Entering directory 
'/build/prime-phylo-1.0.11/obj-x86_64-linux-gnu'
...

and similar things.  Any idea how to fix this?

Kind regards

   Andreas.

[1] https://salsa.debian.org/med-team/prime-phylo

-- 
http://fam-tille.de