Bug#936503: Anybody volunteering to try to save falcon in Debian (Was: Bug#936503: falcon: Python2 removal in sid/bullseye)

[Andreas Tille]

On Thu, Jul 23, 2020 at 06:16:02PM +, Antoni Villalonga wrote:
> Hi,
> 
> https://github.com/PacificBiosciences/FALCON_unzip/issues/160#issuecomment-662481212
> 
> > Christopher Dunn (pb-cdunn):
> > 
> > We have pushed the latest falcon code-base for python3. If that helps, you
> > are free to install it.
> >  * https://github.com/PacificBiosciences/pypeflow3
> >  * https://github.com/PacificBiosciences/falcon3
> >  * https://github.com/PacificBiosciences/falcon_unzip3
> 
> Yeah! :)
> 
> 
> PS: I can see they also updated that repo yesterday (related software?):
> https://github.com/PacificBiosciences/pbbam

Thanka a lot for the hint and your effort about this.  I've just asked
for release tags to know what we should package.

If you are interested it would be really great if you could work on
those Pacific Bioscience software packages. 

Kind regards

 Andreas.

-- 
http://fam-tille.de

Bug#936503: Anybody volunteering to try to save falcon in Debian (Was: Bug#936503: falcon: Python2 removal in sid/bullseye)

[Antoni Villalonga]

On Mon, Jun 15, 2020 at 09:07:12AM +0200, Andreas Tille wrote:
> Control: tags -1 upstream
> Control: forwarded -1 
> https://github.com/PacificBiosciences/FALCON_unzip/issues/160
> 
> Antoni, thanks for opening the issue, Andreas.

Hi,

https://github.com/PacificBiosciences/FALCON_unzip/issues/160#issuecomment-662481212

> Christopher Dunn (pb-cdunn):
> 
> We have pushed the latest falcon code-base for python3. If that helps, you
> are free to install it.
>  * https://github.com/PacificBiosciences/pypeflow3
>  * https://github.com/PacificBiosciences/falcon3
>  * https://github.com/PacificBiosciences/falcon_unzip3

Yeah! :)


PS: I can see they also updated that repo yesterday (related software?):
https://github.com/PacificBiosciences/pbbam

-- 
Antoni Villalonga
https://friki.cat/

Bug#936503: Anybody volunteering to try to save falcon in Debian (Was: Bug#936503: falcon: Python2 removal in sid/bullseye)

[Andreas Tille]

Control: tags -1 upstream
Control: forwarded -1 
https://github.com/PacificBiosciences/FALCON_unzip/issues/160

Antoni, thanks for opening the issue, Andreas.

-- 
http://fam-tille.de

Bug#936503: Anybody volunteering to try to save falcon in Debian (Was: Bug#936503: falcon: Python2 removal in sid/bullseye)

[Antoni Villalonga]

Hi,

> Any reader of the Debian Med list who wants to spent time to discuss this
> with upstream to save falcon in Debian?

Open issue:
  https://github.com/PacificBiosciences/FALCON_unzip/issues/160

Regards,

-- 
Antoni Villalonga
https://friki.cat/

Bug#936503: Anybody volunteering to try to save falcon in Debian (Was: Bug#936503: falcon: Python2 removal in sid/bullseye)

[Andreas Tille]

Hi,

On Sat, Jun 06, 2020 at 04:31:38PM +0200, Moritz Mühlenhoff wrote:
> > Your package either build-depends, depends on Python2, or uses Python2
> > in the autopkg tests.  Please stop using Python2, and fix this issue
> > by one of the following actions.
> 
> It appears this was turned non-free, they only distribute binaries and even 
> those are still dependant
> on Python 2: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

Argh.
 
> | Which binary do I need?
> | 
> | That depends on your python2.7 Unicode size. Almost certainly, you want 
> "ucs4", but you can check this way:
> | 
> | python2.7 -c 'import sysconfig,pprint; 
> pprint.pprint(sysconfig.get_config_vars()["Py_UNICODE_SIZE"])'
> | 
> | (We do not support python3.)
> 
> So let's remove it from the archive?

Any reader of the Debian Med list who wants to spent time to discuss this
with upstream to save falcon in Debian?

Kind regards

   Andreas.

-- 
http://fam-tille.de