Bug#950853: gffutils tests are timing out with Python 3.8

2020-02-10 Thread Stefano Rivera
Control: tag -1 + patch

Hi Matthias (2020.02.07_05:18:06_-0800)
> gffutils tests are timing out with Python 3.8, while they succeed when run 
> with
> 3.7.  Currently only seen in an Ubuntu focal environment, however the upstream
> sources don't mention 3.7 and 3.8 at all.

I spent some time debugging this last week, and I *think* the cause is
https://bugs.python.org/issue38501

This patch seems to avoid it: https://github.com/daler/gffutils/pull/155

SR

-- 
Stefano Rivera
  http://tumbleweed.org.za/
  +1 415 683 3272



Bug#950853: gffutils tests are timing out with Python 3.8

2020-02-07 Thread Matthias Klose
Package: src:python-gffutils
Version: 0.10.1-1
Severity: important
Tags: sid bullseye
User: debian-pyt...@lists.debian.org
Usertags: python3.8

gffutils tests are timing out with Python 3.8, while they succeed when run with
3.7.  Currently only seen in an Ubuntu focal environment, however the upstream
sources don't mention 3.7 and 3.8 at all.

failing with 3.8:
https://objectstorage.prodstack4-5.canonical.com/v1/AUTH_77e2ada1e7a84929a74ba3b87153c0ac/autopkgtest-focal/focal/amd64/p/python-gffutils/20200202_092100_46ce6@/log.gz

succeeding with 3.7:
https://objectstorage.prodstack4-5.canonical.com/v1/AUTH_77e2ada1e7a84929a74ba3b87153c0ac/autopkgtest-focal/focal/amd64/p/python-gffutils/20200121_182358_4208a@/log.gz