Hi,
I need some help with a sphinx error for python-skbio:
On Tue, Aug 11, 2020 at 10:26:10AM +0200, Sebastiaan Couwenberg wrote:
> On 8/11/20 9:41 AM, Andreas Tille wrote:
> > On Tue, Aug 11, 2020 at 07:17:30AM +0200, Sebastiaan Couwenberg wrote:
> >> A smiliar issue was reported for mapproxy in #966979, which was not an
> >> issue in mapproxy but in sphinx, and fixed in sphinx (2.4.3-5).
> >>
> >> I have not tested the build of this package, but the dh_sphinxdoc issue
> >> is mostl likely fixed with sphinx (2.4.3-5) as well.
> >
> > Thanks for the hint but I get:
> >
> > reading sources... [ 0%] generated/skbio.alignment.AlignmentStructure
> > /build/python-skbio-0.5.6/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py:143:
> > RuntimeWarning: The result contains negative eigenvalues. Please compare
> > their magnitude with the magnitude of some of the largest positive
> > eigenvalues. If the negative ones are smaller, it's probably safe to ignore
> > them, but if they are large in magnitude, the results won't be useful. See
> > the Notes section for more details. The smallest eigenvalue is
> > -0.011492611219229537 and the largest is 16.021722090908206.
> > warn(
> > /build/python-skbio-0.5.6/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/_ordination_results.py:285:
> > UserWarning: Tight layout not applied. The left and right margins cannot
> > be made large enough to accommodate all axes decorations.
> > fig.tight_layout()
> >
> > Extension error:
> > Handler for event
> > 'autodoc-process-docstring' threw an exception (exception: module, class,
> > method, function, traceback, frame, or code object was expected, got
> > method_descriptor)
> > make[1]: *** [debian/rules:20: override_dh_auto_build-indep] Error 2
>
> That's not the dh_sphinxdoc error this issue was filed for.
>
> This failure is most likely caused by an extension not being compatible
> with sphinx 3.2.0.
>
> sphinx was upgraded in unstable from 2.4.3-5 to 3.2.0-1 two days ago.
Any idea how to fix this?
Kind regards
Andreas.
--
http://fam-tille.de
