Bug#1016732: node-sockjs throws: TypeError: Cannot read properties of undefined (reading 'addEventListener') at WebSocketReceiver.setUp

2022-08-06 Thread Nilesh Patra

On 8/7/22 11:04 AM, Yadd wrote:

On 06/08/2022 14:59, Nilesh Patra wrote:

Yadd,

Since you added in coffeescript patch for this package, I'd highly appreciate if
you could consider taking a look.


Hi,

is there a test somewhere to see this error ?


I'm not aware of any specific test that could trigger this code unfortunately, 
but I can reproduce
it on running shiny-server.
(Sorry for the long procedure)

| # apt install shiny-server
| # cd /srv
| # mkdir -p shiny-server
| # cd shiny-server
| # mkdir covid
| # cd covid
| # wget 
https://raw.githubusercontent.com/eebrown/covidprobability_shiny/main/app.R
| # R -e 'install.packages(c("covidprobability", "shinyjs"))'
| # # Start shiny server
| # shiny-server
|
|  ===> This will start on localhost:3838. Migrate to localhost:3838/covid, 
click on any of the bars and you will see this on terminal
|
| [2022-08-06T23:03:16.777] [INFO] shiny-server - Shiny Server v1.5.19.0 
(Node.js v18.6.0)
| [2022-08-06T23:03:16.779] [INFO] shiny-server - Using config file 
"/etc/shiny-server/shiny-server.conf"
| [2022-08-06T23:03:16.830] [WARN] shiny-server - Running as root unnecessarily 
is a security risk! You could be running more securely as non-root.
| [2022-08-06T23:03:16.836] [INFO] shiny-server - Starting listener on 
http://[::]:3838
| [2022-08-06T23:03:33.825] [ERROR] shiny-server - Uncaught exception: 
TypeError: Cannot read properties of undefined (reading 'addEventListener')
| [2022-08-06T23:03:33.829] [ERROR] shiny-server - TypeError: Cannot read 
properties of undefined (reading 'addEventListener')
| at WebSocketReceiver.setUp 
(/usr/share/nodejs/sockjs/lib/trans-websocket.js:76:24)
| at new GenericReceiver (/usr/share/nodejs/sockjs/lib/transport.js:313:12)
| at new WebSocketReceiver 
(/usr/share/nodejs/sockjs/lib/trans-websocket.js:63:9)
| at ws.onopen (/usr/share/nodejs/sockjs/lib/trans-websocket.js:31:55)
| at WebSocket.dispatchEvent 
(/usr/share/nodejs/faye-websocket/lib/faye/websocket/api/event_target.js:24:30)
| at WebSocket._open 
(/usr/share/nodejs/faye-websocket/lib/faye/websocket/api.js:144:10)
| at Hybi. 
(/usr/share/nodejs/faye-websocket/lib/faye/websocket/api.js:35:49)
| at Hybi.emit (node:events:513:28)
| at Hybi._open 
(/usr/share/nodejs/websocket-driver/lib/websocket/driver/base.js:148:10)
| at Hybi.start 
(/usr/share/nodejs/websocket-driver/lib/websocket/driver/base.js:105:34)
| [2022-08-06T23:03:33.839] [INFO] shiny-server - Stopping listener on 
http://[::]:3838
| [2022-08-06T23:03:33.839] [INFO] shiny-server - Shutting down worker 
processes (with notification)
| /usr/lib/shiny-server/lib/main.js:391
|   throw err;
|   ^
|
| TypeError: Cannot read properties of undefined (reading 'addEventListener')
| at WebSocketReceiver.setUp 
(/usr/share/nodejs/sockjs/lib/trans-websocket.js:76:24)
| at new GenericReceiver (/usr/share/nodejs/sockjs/lib/transport.js:313:12)
| at new WebSocketReceiver 
(/usr/share/nodejs/sockjs/lib/trans-websocket.js:63:9)
| at ws.onopen (/usr/share/nodejs/sockjs/lib/trans-websocket.js:31:55)
| at WebSocket.dispatchEvent 
(/usr/share/nodejs/faye-websocket/lib/faye/websocket/api/event_target.js:24:30)
| at WebSocket._open 
(/usr/share/nodejs/faye-websocket/lib/faye/websocket/api.js:144:10)
| at Hybi. 
(/usr/share/nodejs/faye-websocket/lib/faye/websocket/api.js:35:49)
| at Hybi.emit (node:events:513:28)
| at Hybi._open 
(/usr/share/nodejs/websocket-driver/lib/websocket/driver/base.js:148:10)
| at Hybi.start 
(/usr/share/nodejs/websocket-driver/lib/websocket/driver/base.js:105:34)
|
| Node.js v18.6.0


--
Best,
Nilesh



OpenPGP_signature
Description: OpenPGP digital signature


Bug#1016282: marked as done (qcoro: FTBFS: qcorosignal.h:225:14: error: ‘((Data**)((char*)&result + offsetof(std::optional >,std::optional >::

2022-08-06 Thread Debian Bug Tracking System
Your message dated Sun, 07 Aug 2022 06:03:55 +
with message-id 
and subject line Bug#1016282: fixed in qcoro 0.6.0-4
has caused the Debian Bug report #1016282,
regarding qcoro: FTBFS: qcorosignal.h:225:14: error: ‘((Data**)((char*)&result 
+ offsetof(std::optional 
>,std::optional 
>::.std::_Optional_base, false, 
false>::_M_payload.std::_Optional_payload, false, 
false, false>::.std::_Optional_payload, 
true, false, 
false>::.std::_Optional_payload_base 
>::_M_payload)))[1]’ may be used uninitialized [-Werror=maybe-uninitialized]
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
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Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: qcoro
Version: 0.6.0-3
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20220728 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> cd /<>/build-Qt6/tests/testlibs && /usr/bin/c++ -DQT_CORE_LIB 
> -DQT_NO_CAST_FROM_ASCII -DQT_NO_CAST_FROM_BYTEARRAY -DQT_NO_CAST_TO_ASCII 
> -DQT_NO_DEBUG -DQT_NO_FOREACH -DQT_NO_KEYWORDS 
> -DQT_NO_NARROWING_CONVERSIONS_IN_CONNECT -DQT_NO_URL_CAST_FROM_STRING 
> -DQT_STRICT_ITERATORS 
> -DQT_TESTCASE_BUILDDIR=\"/<>/build-Qt6/tests/testlibs\" 
> -DQT_TESTCASE_SOURCEDIR=\"/<>/tests/testlibs\" -DQT_TESTLIB_LIB 
> -DQT_USE_STRINGBUILDER 
> -I/<>/build-Qt6/tests/testlibs/qcoro_test_autogen/include 
> -I/<>/tests/testlibs -I/<> -I/<>/qcoro 
> -I/<>/qcoro/core -I/<>/build-Qt6/qcoro/core 
> -I/<>/build-Qt6/qcoro -isystem 
> /usr/include/x86_64-linux-gnu/qt6/QtCore -isystem 
> /usr/include/x86_64-linux-gnu/qt6 -isystem 
> /usr/lib/x86_64-linux-gnu/qt6/mkspecs/linux-g++ -isystem 
> /usr/include/x86_64-linux-gnu/qt6/QtTest -g -O2 
> -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat 
> -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror 
> -pedantic -fcoroutines -fPIC -pthread -std=gnu++20 -MD -MT 
> tests/testlibs/CMakeFiles/qcoro_test.dir/testloop.cpp.o -MF 
> CMakeFiles/qcoro_test.dir/testloop.cpp.o.d -o 
> CMakeFiles/qcoro_test.dir/testloop.cpp.o -c 
> /<>/tests/testlibs/testloop.cpp
> In file included from /<>/qcoro/websockets/qcorowebsocket.cpp:7:
> /<>/qcoro/core/qcorosignal.h: In function ‘void 
> qCoroSignalListener<{anonymous}::WebSocketSignalWatcher, void 
> ({anonymous}::WebSocketSignalWatcher::*)(std::optional bool> >)>({anonymous}::WebSocketSignalWatcher*, void 
> ({anonymous}::WebSocketSignalWatcher::*&&)(std::optional  bool> >), 
> std::chrono::milliseconds)::  void 
> ({anonymous}::WebSocketSignalWatcher::*)(std::optional bool> >)>, 
> std::default_delete  void 
> ({anonymous}::WebSocketSignalWatcher::*)(std::optional bool> >)> > 
> >)>::operator()(qCoroSignalListener<{anonymous}::WebSocketSignalWatcher, void 
> ({anonymous}::WebSocketSignalWatcher::*)(std::optional bool> >)>({anonymous}::WebSocketSignalWatcher*, void 
> ({anonymous}::WebSocketSignalWatcher::*&&)(std::optional  bool> >), 
> std::chrono::milliseconds)::  void 
> ({anonymous}::WebSocketSignalWatcher::*)(std::optional bool> >)>, 
> std::default_delete  void 
> ({anonymous}::WebSocketSignalWatcher::*)(std::optional bool> >)> > 
> >)>::_ZZ19qCoroSignalListenerIN12_GLOBAL__N_122WebSocketSignalWatcherEMS1_FvSt8optionalISt5tupleIJ10QByteArraybEN5QCoro14AsyncGeneratorINS9_6detail16QCoroSignalQueueIT_T0_E11result_type10value_typeEEEPSD_OSE_NSt6chrono8durationIlSt5ratioILl1ELl1000ENKUlSt10unique_ptrINSC_IS1_S8_EESt14default_deleteISR_EEE_clESU_.Frame*)’:
> /<>/qcoro/core/qcorosignal.h:225:14: error: 
> ‘((Data**)((char*)&result + offsetof(std::optional bool> >,std::optional 
> >::.std::_Optional_base, false, 
> false>::_M_payload.std::_Optional_payload, 
> false, false, false>::.std::_Optional_payload bool>, true, false, 
> false>::.std::_Optional_payload_base 
> >::_M_payload)))[1]’ may be used uninitialized [-Werror=maybe-uninitialized]
>   225 | auto result = std::move(mQueue.front());
>   |  ^~
> /<>/qcoro/core/qcorosignal.h:225:14: error: 
> ‘((char**)((char*)&result + offsetof(std::optional bool> >,std::optional 
> >::.std::_Optional_base, false, 
> false>::_M_payload.std::_Optional_payload, 
> false, false, false>::.std::_Optional_payload bool>, true, false, 
> false>::.std::_Optional_payload_base 
> >::_M_payload)))[2]’ may be used uninitialized [-Werror=maybe-uninitialized]
> [ 34%] Linking CXX shared library libQCoro6Network.so
> cd /<>/build-Qt6/qcoro/network && /usr/bin/cmake -E 
> 

Bug#1016732: node-sockjs throws: TypeError: Cannot read properties of undefined (reading 'addEventListener') at WebSocketReceiver.setUp

2022-08-06 Thread Yadd

On 06/08/2022 14:59, Nilesh Patra wrote:

Yadd,

Since you added in coffeescript patch for this package, I'd highly appreciate if
you could consider taking a look.


Hi,

is there a test somewhere to see this error ?



Processed: tagging 1016282

2022-08-06 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> tags 1016282 + pending
Bug #1016282 [src:qcoro] qcoro: FTBFS: qcorosignal.h:225:14: error: 
‘((Data**)((char*)&result + offsetof(std::optional 
>,std::optional 
>::.std::_Optional_base, false, 
false>::_M_payload.std::_Optional_payload, false, 
false, false>::.std::_Optional_payload, 
true, false, 
false>::.std::_Optional_payload_base 
>::_M_payload)))[1]’ may be used uninitialized [-Werror=maybe-uninitialized]
Added tag(s) pending.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1016282: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016282
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Processed: reopen for bullseye

2022-08-06 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> reopen 1010355
Bug #1010355 {Done: Santiago Vila } [unzip] unzip: 
CVE-2022-0529 CVE-2022-0530
'reopen' may be inappropriate when a bug has been closed with a version;
all fixed versions will be cleared, and you may need to re-add them.
Bug reopened
No longer marked as fixed in versions unzip/6.0-27.
> found 1010355 6.0-21+deb9u2
Bug #1010355 [unzip] unzip: CVE-2022-0529 CVE-2022-0530
Ignoring request to alter found versions of bug #1010355 to the same values 
previously set
> fixed 1010355 6.0-27
Bug #1010355 [unzip] unzip: CVE-2022-0529 CVE-2022-0530
Marked as fixed in versions unzip/6.0-27.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1010355: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1010355
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#1016618: marked as done (nvidia-graphics-drivers-tesla-450: CVE-2022-31607, CVE-2022-31608, CVE-2022-31615)

2022-08-06 Thread Debian Bug Tracking System
Your message dated Sat, 06 Aug 2022 22:50:05 +
with message-id 
and subject line Bug#1016618: fixed in nvidia-graphics-drivers-tesla-450 
450.203.03-1
has caused the Debian Bug report #1016618,
regarding nvidia-graphics-drivers-tesla-450: CVE-2022-31607, CVE-2022-31608, 
CVE-2022-31615
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1016618: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016618
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: nvidia-graphics-drivers
Severity: serious
Tags: security upstream
Control: clone -1 -2 -3 -4 -5 -6 -7 -8
Control: reassign -2 src:nvidia-graphics-drivers-legacy-340xx 340.76-6
Control: retitle -2 nvidia-graphics-drivers-legacy-340xx: CVE-2022-31607, 
CVE-2022-31608, CVE-2022-31615
Control: tag -2 + wontfix
Control: reassign -3 src:nvidia-graphics-drivers-legacy-390xx 390.48-4
Control: retitle -3 nvidia-graphics-drivers-legacy-390xx: CVE-2022-31607, 
CVE-2022-31608, CVE-2022-31615
Control: reassign -4 src:nvidia-graphics-drivers-tesla-418 418.87.01-1
Control: retitle -4 nvidia-graphics-drivers-tesla-418: CVE-2022-31607, 
CVE-2022-31608, CVE-2022-31615
Control: tag -4 + wontfix
Control: reassign -5 src:nvidia-graphics-drivers-tesla-450 450.51.05-1
Control: retitle -5 nvidia-graphics-drivers-tesla-450: CVE-2022-31607, 
CVE-2022-31608, CVE-2022-31615
Control: reassign -6 src:nvidia-graphics-drivers-tesla-460 460.32.03-1
Control: retitle -6 nvidia-graphics-drivers-tesla-460: CVE-2022-31607, 
CVE-2022-31608, CVE-2022-31615
Control: tag -6 + wontfix
Control: close -6 460.106.00-3
Control: reassign -7 src:nvidia-graphics-drivers-tesla-470 470.57.02-1
Control: retitle -7 nvidia-graphics-drivers-tesla-470: CVE-2022-31607, 
CVE-2022-31608, CVE-2022-31615
Control: reassign -8 src:nvidia-graphics-drivers-tesla-510 510.47.03-1
Control: retitle -8 nvidia-graphics-drivers-tesla-510: CVE-2022-31607, 
CVE-2022-31608, CVE-2022-31615
Control: found -1 340.24-1
Control: found -1 343.22-1
Control: found -1 396.18-1
Control: found -1 430.14-1
Control: found -1 455.23.04-1
Control: found -1 465.24.02-1
Control: found -1 495.44-1

https://nvidia.custhelp.com/app/answers/detail/a_id/5383

CVE-2022-31607  NVIDIA GPU Display Driver for Linux contains a
vulnerability in the kernel mode layer (nvidia.ko), where a local user
with basic capabilities can cause improper input validation, which may
lead to denial of service, escalation of privileges, data tampering, and
limited information disclosure.

CVE-2022-31608  NVIDIA GPU Display Driver for Linux contains a
vulnerability in an optional D-Bus configuration file, where a local
user with basic capabilities can impact protected D-Bus endpoints, which
may lead to code execution, denial of service, escalation of privileges,
information disclosure, and data tampering.

CVE-2022-31615  NVIDIA GPU Display Driver for Linux contains a
vulnerability in the kernel mode layer, where a local user with basic
capabilities can cause a null-pointer dereference, which may lead to
denial of service.

Linux Driver Branch CVE IDs Addressed
R515, R510, R470, R450, R390CVE-2022-31607, CVE-2022-31608, CVE-2022-31615


Andreas
--- End Message ---
--- Begin Message ---
Source: nvidia-graphics-drivers-tesla-450
Source-Version: 450.203.03-1
Done: Andreas Beckmann 

We believe that the bug you reported is fixed in the latest version of
nvidia-graphics-drivers-tesla-450, which is due to be installed in the Debian 
FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1016...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Beckmann  (supplier of updated 
nvidia-graphics-drivers-tesla-450 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 07 Aug 2022 00:14:36 +0200
Source: nvidia-graphics-drivers-tesla-450
Architecture: source
Version: 450.203.03-1
Distribution: unstable
Urgency: medium
Maintainer: Debian NVIDIA Maintainers 
Changed-By: Andreas Beckmann 
Closes: 1016618
Changes:
 nvidia-graphics-drivers-tesla-450 (450.203.03-1) unstable; urgency=medium
 .
   * New upstream Tesla release 450.203.03 (2022-08-02).
 * Fixed CVE-2022-31607, CVE-2022-31608, CVE-2022-31615. (

Bug#1016748: marked as done (mathcomp-analysis: FTBFS: test failure: Error: apply-w-params)

2022-08-06 Thread Debian Bug Tracking System
Your message dated Sat, 06 Aug 2022 21:53:42 +
with message-id 
and subject line Bug#1016748: fixed in mathcomp-analysis 0.5.2-2
has caused the Debian Bug report #1016748,
regarding mathcomp-analysis: FTBFS: test failure: Error: apply-w-params
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
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Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: mathcomp-analysis
Version: 0.5.2-1
Severity: serious
Tags: ftbfs
Justification: fails to build from source (but built successfully in the past)

Rebuilds of mathcomp-analysis failed:

COQC theories/realfun.v
COQC theories/exp.v
COQC theories/lebesgue_measure.v
File "./theories/lebesgue_measure.v", line 133, characters 0-76:
Warning: Casts are ignored in patterns [cast-in-pattern,automation]
File "./theories/lebesgue_measure.v", line 133, characters 0-76:
Warning: Casts are ignored in patterns [cast-in-pattern,automation]
COQC theories/lebesgue_integral.v
COQC theories/trigo.v
File "./theories/lebesgue_integral.v", line 201, characters 0-51:
Error: apply-w-params

make[3]: *** [Makefile.coq:764: theories/lebesgue_integral.vo] Error 1
make[3]: *** Waiting for unfinished jobs
make[2]: *** [Makefile.coq:387: all] Error 2


Cheers
-- 
Sebastian Ramacher
--- End Message ---
--- Begin Message ---
Source: mathcomp-analysis
Source-Version: 0.5.2-2
Done: Julien Puydt 

We believe that the bug you reported is fixed in the latest version of
mathcomp-analysis, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1016...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Julien Puydt  (supplier of updated mathcomp-analysis package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 06 Aug 2022 23:25:50 +0200
Source: mathcomp-analysis
Architecture: source
Version: 0.5.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian OCaml Maintainers 
Changed-By: Julien Puydt 
Closes: 1016259 1016748
Changes:
 mathcomp-analysis (0.5.2-2) unstable; urgency=medium
 .
   * Add patch to support more recent elpi versions (Closes: #1016748).
   * Upload will trigger rebuild (Closes: #1016259).
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-END PGP SIGNATURE End Message ---


Bug#1016259: marked as done (mathcomp-analysis: FTBFS: build-dependency not installable: libcoq-elpi-b71f8)

2022-08-06 Thread Debian Bug Tracking System
Your message dated Sat, 06 Aug 2022 21:53:42 +
with message-id 
and subject line Bug#1016259: fixed in mathcomp-analysis 0.5.2-2
has caused the Debian Bug report #1016259,
regarding mathcomp-analysis: FTBFS: build-dependency not installable: 
libcoq-elpi-b71f8
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1016259: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016259
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: mathcomp-analysis
Version: 0.5.2-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20220728 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> +--+
> | Install package build dependencies  
>  |
> +--+
> 
> 
> Setup apt archive
> -
> 
> Merged Build-Depends: coq, debhelper-compat (= 13), dh-coq, dh-ocaml, 
> libcoq-elpi, libcoq-elpi-ocaml-dev, libcoq-hierarchy-builder, 
> libcoq-mathcomp-algebra, libcoq-mathcomp-field, libcoq-mathcomp-fingroup, 
> libcoq-mathcomp-solvable, libcoq-mathcomp-ssreflect, 
> libcoq-mathcomp-bigenough, libcoq-mathcomp-finmap, ocaml-dune, 
> build-essential, fakeroot
> Filtered Build-Depends: coq, debhelper-compat (= 13), dh-coq, dh-ocaml, 
> libcoq-elpi, libcoq-elpi-ocaml-dev, libcoq-hierarchy-builder, 
> libcoq-mathcomp-algebra, libcoq-mathcomp-field, libcoq-mathcomp-fingroup, 
> libcoq-mathcomp-solvable, libcoq-mathcomp-ssreflect, 
> libcoq-mathcomp-bigenough, libcoq-mathcomp-finmap, ocaml-dune, 
> build-essential, fakeroot
> dpkg-deb: building package 'sbuild-build-depends-main-dummy' in 
> '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'.
> Ign:1 copy:/<>/apt_archive ./ InRelease
> Get:2 copy:/<>/apt_archive ./ Release [957 B]
> Ign:3 copy:/<>/apt_archive ./ Release.gpg
> Get:4 copy:/<>/apt_archive ./ Sources [464 B]
> Get:5 copy:/<>/apt_archive ./ Packages [549 B]
> Fetched 1970 B in 0s (80.5 kB/s)
> Reading package lists...
> Reading package lists...
> 
> Install main build dependencies (apt-based resolver)
> 
> 
> Installing build dependencies
> Reading package lists...
> Building dependency tree...
> Some packages could not be installed. This may mean that you have
> requested an impossible situation or if you are using the unstable
> distribution that some required packages have not yet been created
> or been moved out of Incoming.
> The following information may help to resolve the situation:
> 
> The following packages have unmet dependencies:
>  libcoq-hierarchy-builder : Depends: libcoq-elpi-b71f8 but it is not 
> installable
> E: Unable to correct problems, you have held broken packages.
> apt-get failed.


The full build log is available from:
http://qa-logs.debian.net/2022/07/28/mathcomp-analysis_0.5.2-1_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220728;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220728&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: mathcomp-analysis
Source-Version: 0.5.2-2
Done: Julien Puydt 

We believe that the bug you reported is fixed in the latest version of
mathcomp-analysis, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1016...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Julien Puydt  (supplier of updated mathcomp-analysis package)

(This message was generated automatically at their request; if you
believe that there i

Bug#1014903: marked as done (xorg-server: CVE-2022-2319 CVE-2022-2320)

2022-08-06 Thread Debian Bug Tracking System
Your message dated Sat, 06 Aug 2022 21:02:13 +
with message-id 
and subject line Bug#1014903: fixed in xorg-server 2:1.20.11-1+deb11u2
has caused the Debian Bug report #1014903,
regarding xorg-server: CVE-2022-2319 CVE-2022-2320
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1014903: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1014903
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: xorg-server
Version: 2:21.1.3-2
Severity: grave
Tags: security upstream
Justification: user security hole
X-Debbugs-Cc: car...@debian.org, Debian Security Team 

Hi,

The following vulnerabilities were published for xorg-server.

CVE-2022-2319[0]:
| ZDI-CAN-16062: X.Org Server ProcXkbSetGeometry Out-Of-Bounds Access

CVE-2022-2320[1]:
| ZDI-CAN-16070: X.Org Server ProcXkbSetDeviceInfo Out-Of-Bounds Access

If you fix the vulnerabilities please also make sure to include the
CVE (Common Vulnerabilities & Exposures) ids in your changelog entry.

For further information see:

[0] https://security-tracker.debian.org/tracker/CVE-2022-2319
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2022-2319
[1] https://security-tracker.debian.org/tracker/CVE-2022-2320
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2022-2320
[2] https://www.openwall.com/lists/oss-security/2022/07/12/1

Please adjust the affected versions in the BTS as needed.

Regards,
Salvatore
--- End Message ---
--- Begin Message ---
Source: xorg-server
Source-Version: 2:1.20.11-1+deb11u2
Done: Emilio Pozuelo Monfort 

We believe that the bug you reported is fixed in the latest version of
xorg-server, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1014...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Emilio Pozuelo Monfort  (supplier of updated xorg-server 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Date: Fri, 05 Aug 2022 10:00:36 +0200
Source: xorg-server
Architecture: source
Version: 2:1.20.11-1+deb11u2
Distribution: bullseye-security
Urgency: medium
Maintainer: Debian X Strike Force 
Changed-By: Emilio Pozuelo Monfort 
Closes: 1014903
Changes:
 xorg-server (2:1.20.11-1+deb11u2) bullseye-security; urgency=medium
 .
   * xkb: add request length validation for XkbSetGeometry (CVE-2022-2319)
   * xkb: swap XkbSetDeviceInfo and XkbSetDeviceInfoCheck (CVE-2022-2320)
   * Closes: #1014903.
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Bug#1016342: marked as done (pyscanfcs: FTBFS: make[1]: *** [debian/rules:37: override_dh_auto_build] Error 1)

2022-08-06 Thread Debian Bug Tracking System
Your message dated Sat, 06 Aug 2022 20:38:24 +
with message-id 
and subject line Bug#1016342: fixed in pyscanfcs 0.3.6+ds-4
has caused the Debian Bug report #1016342,
regarding pyscanfcs: FTBFS: make[1]: *** [debian/rules:37: 
override_dh_auto_build] Error 1
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1016342: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016342
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: pyscanfcs
Version: 0.3.6+ds-3
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20220728 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> make[1]: Entering directory '/<>'
> cd doc && \
> faketime -f "2022-07-21 20:00:35+00:00" pdflatex -synctex=1 
> -interaction=nonstopmode PyScanFCS_doc.tex \
> faketime -f "2022-07-21 20:00:35+00:00" pdflatex -synctex=1 
> -interaction=nonstopmode PyScanFCS_doc.tex && \
> bibtex PyScanFCS_doc.aux && \
> faketime -f "2022-07-21 20:00:35+00:00" pdflatex -synctex=1 
> -interaction=nonstopmode PyScanFCS_doc.tex && \
> faketime -f "2022-07-21 20:00:35+00:00" pdflatex -synctex=1 
> -interaction=nonstopmode PyScanFCS_doc.tex
> This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) 
> (preloaded format=pdflatex)
>  restricted \write18 enabled.
> entering extended mode
> (./PyScanFCS_doc.tex
> LaTeX2e <2022-06-01> patch level 5
> L3 programming layer <2022-07-15>
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrartcl.cls
> Document Class: scrartcl 2022/07/04 v3.37 KOMA-Script document class (article)
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrkbase.sty
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrbase.sty
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlfile.sty
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlfile-hook.sty
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlogo.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/tocbasic.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrsize12pt.clo)
> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/typearea.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
> (/usr/share/texlive/texmf-dist/tex/latex/ucs/utf8x.def))
> (/usr/share/texlive/texmf-dist/tex/latex/ucs/ucs.sty
> (/usr/share/texlive/texmf-dist/tex/latex/ucs/data/uni-global.def))
> (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty
> (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)
> (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf))
> (/usr/share/texlive/texmf-dist/tex/generic/babel/locale/en/babel-english.tex)
> (/usr/share/texlive/texmf-dist/tex/latex/sistyle/sistyle.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty
> (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)))
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
> For additional information on amsmath, use the `?' option.
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
> (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/cite/cite.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/subfig/subfig.sty
> (/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty
> (/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty
> (/usr/share/texlive/texmf-dist/tex/latex/caption/caption-koma.sto
> (/usr/share/texlive/texmf-dist/tex/latex/tools/tabularx.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)
> (/usr/share/texlive/texmf-dist/tex/latex/xcolor/svgnam.def))
> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
> (/usr/

Processed: Re: Bug#1016369: IO::Handle ->error does not work, always saying "fine"

2022-08-06 Thread Debian Bug Tracking System
Processing control commands:

> severity -1 normal
Bug #1016369 [perl] IO::Handle ->error does not work, always saying "fine"
Severity set to 'normal' from 'grave'

-- 
1016369: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016369
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#1016369: IO::Handle ->error does not work, always saying "fine"

2022-08-06 Thread Niko Tyni
Control: severity -1 normal

Hi, thanks Ian for the report and Damyan for looking into the issues.

On Sun, Jul 31, 2022 at 11:37:09AM +0300, Damyan Ivanov wrote:
> -=| Ian Jackson, 30.07.2022 13:42:05 +0100 |=-
> > Package: perl
> > Version: 5.34.0-4
> > Severity: grave
> > 
> > To reproduce
> > 
> > perl -MIO::Handle -e 'open X, "<", "." or die $!; $_ = ; printf "%s 
> > %s %s\n", X->error(), $!;'
> > perl -MIO::Handle -e 'open X, ">", "/dev/full" or die $!; print X 1; 
> > flush X; printf "%s %s %s\n", X->error(), $!; close X'
> > 
> > Expected output
> > 
> > -1 Bad file descriptor
> > -1 No space left on device
> > 
> > Actual output
> > 
> > 0 Bad file descriptor
> > 0 No space left on device


FWIW I get 

0 Is a directory 
1 No space left on device 

on sid (perl_5.34.0-5). I'm not sure why you'd expect -1. The documentation
for IO::Handle::error() only mentions it reporting a true value.

The first issue (reading a directory as a plain file) seems to be about
the error flag getting cleared when reading past EOF or something like
that. According to my meager debugger skills, the clearing happens around

  https://sources.debian.org/src/perl/5.34.0-5/pp_hot.c/#L3278

As Damyan notes, you can detect this by checking for EOF before reading,
although

   perl -MIO::Handle -e 'open X, "<", "." or die $!; $_ =  if !X->eof(); 
printf "%s %s\n", X->error(), $!;'
   1 Inappropriate ioctl for device 

is not quite what I'd expect either.

Anyway, the data loss argument seems misplaced given we've read all the
data there is when we are at EOF?

I can see there is probably a bug around here, but it would be good
to have an example test case that doesn't involve treating a directory
as a plain file (which can have very varying results between different
platforms) before taking this upstream. Particularly so if you want to
argue it's as serious as claimed here.

See also https://github.com/Perl/perl5/issues/12782 which has not
received attention in almost ten years.


The second issue (writing to /dev/full) is indeed fixed in sid / Perl
5.34.  It was https://github.com/Perl/perl5/issues/6799 and reportedly
only affects things like character devices (including /dev/full) and
sockets. I've verified that trying to write to a normal file on a full
filesystem does set the error() flag on stable / Perl 5.32.

I think that makes the issue less severe, and I'm not very inclined to
fix it in stable.  But in case we end up doing that anyway, these would
be the commits needed:


https://github.com/Perl/perl5/commit/89341f87f9fc65c4d7133e497bb04586e86b8052


https://github.com/Perl/perl5/commit/8a2562bec7cd9f8eff6812f340f99028bb33

Downgrading the severity, but let me know what you think based on the above.
-- 
Niko



Processed: closing 1016356

2022-08-06 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> close 1016356
Bug #1016356 [unpaper] FTBFS: unpaper fails to build against ffmpeg 5.0
Marked Bug as done
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1016356: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016356
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Processed: fixed 1016356 in 7.0.0-0.1

2022-08-06 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> fixed 1016356 7.0.0-0.1
Bug #1016356 [unpaper] FTBFS: unpaper fails to build against ffmpeg 5.0
Marked as fixed in versions unpaper/7.0.0-0.1.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1016356: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016356
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Processed (with 1 error): reassign 1004640 to src:unpaper, forcibly merging 1016356 1004640

2022-08-06 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> reassign 1004640 src:unpaper
Bug #1004640 {Done: Nicholas Guriev } [src:unpaper] unpaper: 
FTBFS with ffmpeg 5.0
Ignoring request to reassign bug #1004640 to the same package
> forcemerge 1016356 1004640
Bug #1016356 [unpaper] FTBFS: unpaper fails to build against ffmpeg 5.0
Unable to merge bugs because:
package of #1004640 is 'src:unpaper' not 'unpaper'
Failed to forcibly merge 1016356: Did not alter merged bugs.

> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1004640: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1004640
1016356: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016356
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#1016670: marked as done (libconfig-model-dpkg-perl: autopkgtest failures)

2022-08-06 Thread Debian Bug Tracking System
Your message dated Sat, 06 Aug 2022 17:05:18 +
with message-id 
and subject line Bug#1016670: fixed in libconfig-model-dpkg-perl 2.163
has caused the Debian Bug report #1016670,
regarding libconfig-model-dpkg-perl: autopkgtest failures
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1016670: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016670
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: libconfig-model-dpkg-perl
Version: 2.162
Severity: serious
Justification: autopkgtest failures are serious

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

libconfig-model-dpkg-perl fails its autopkgtests both on ci.d.n and
locally. (But not the tests during build.)

https://ci.debian.net/data/autopkgtest/unstable/amd64/libc/libconfig-model-dpkg-perl/24124550/log.gz
and copied from a local test:

…
ok 106 - test debhelper migration
In config class 'Dpkg::Control::Source', (location: control source Vcs-Browser) 
element 'Vcs-Browser' (level normal) has a configuration model error:
Compute argument 'pkgname', error with '- Source':
Configuration item 'control source Source' has a wrong value:
Undefined mandatory value.
value is computed from 'use Cwd; my $res = getcwd =~ 
m!/([a-z0-9][a-z0-9+.-]+)$! ? $1 : undef;
'

# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 255 just after 106.
Dubious, test returned 255 (wstat 65280, 0xff00)
All 106 subtests passed

2022/08/04 22:40:52 write backend Dpkg Config::Model::Backend::Dpkg::write 
failed: In config class 'Dpkg', (location: changelog) element 'changelog' 
(level normal) has a configuration model error:
Compute argument 'pkg_name', error with '! control source Source':
Configuration item 'control source Source' has a wrong value:
Undefined mandatory value.
value is computed from 'use Cwd; my $res = getcwd =~ 
m!/([a-z0-9][a-z0-9+.-]+)$! ? $1 : undef;
'
…
2022/08/04 22:40:53 write backend Dpkg::Control 
Config::Model::Backend::Dpkg::Control::write failed: Configuration item 
'control source Source' has a wrong value:
Undefined mandatory value.
value is computed from 'use Cwd; my $res = getcwd =~ 
m!/([a-z0-9][a-z0-9+.-]+)$! ? $1 : undef;
'
Configuration item 'control source Source' has a wrong value:
Undefined mandatory value.
value is computed from 'use Cwd; my $res = getcwd =~ 
m!/([a-z0-9][a-z0-9+.-]+)$! ? $1 : undef;
'
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 255 just after 1.
Dubious, test returned 255 (wstat 65280, 0xff00)
All 1 subtests passed
…
Test Summary Report
- ---
t/dependency-check.t(Wstat: 65280 Tests: 106 Failed: 0)
  Non-zero exit status: 255
  Parse errors: No plan found in TAP output
t/dpkg.t(Wstat: 65280 Tests: 1 Failed: 0)
  Non-zero exit status: 255
  Parse errors: No plan found in TAP output


Cheers,
gregor


- -- System Information:
Debian Release: bookworm/sid
  APT prefers unstable
  APT policy: (990, 'unstable'), (500, 'unstable-debug'), (500, 
'stable-security'), (500, 'oldoldstable'), (500, 'experimental'), (500, 
'testing'), (500, 'stable'), (500, 'oldstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 5.18.0-2-amd64 (SMP w/4 CPU threads; PREEMPT)
Kernel taint flags: TAINT_WARN, TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=C, LC_CTYPE=de_AT.utf8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: sysvinit (via /sbin/init)
LSM: AppArmor: enabled

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--- End Message

Bug#1016670: marked as pending in libconfig-model-dpkg-perl

2022-08-06 Thread Dominique Dumont
Control: tag -1 pending

Hello,

Bug #1016670 in libconfig-model-dpkg-perl reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/perl-team/modules/packages/libconfig-model-dpkg-perl/-/commit/522848cbf14008062b10b98a7d0a4f5e947465be


Test: set Source value when needed

Closes: #1016670
Thanks: gregoa for the bug report

This bug is related to 1015913

This commit fixes autopkgtest failures. Looks like autopkgtest runs in
a directory that cannot be used as default Source value. So Source
value remains undef.

This is a problem because Source value is mandatory and is used to
compute the default value of Vcs-Browser.  So when Computation of
Vcs-Browser tries to Source, the mandatory check kicks in and exit on
error.

Here the solution is to set a dummy value before Vcs-Browser is
read (which triggers the computation of its default value).


(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1016670



Processed: Bug#1016670 marked as pending in libconfig-model-dpkg-perl

2022-08-06 Thread Debian Bug Tracking System
Processing control commands:

> tag -1 pending
Bug #1016670 [src:libconfig-model-dpkg-perl] libconfig-model-dpkg-perl: 
autopkgtest failures
Added tag(s) pending.

-- 
1016670: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016670
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Processed: tagging 1016401, found 1016401 in ncview/2.1.8+ds-4

2022-08-06 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> tags 1016401 + bookworm sid
Bug #1016401 {Done: Bas Couwenberg } [src:ncview] switch 
build depends on libnetpbm10-dev to libnetpbm-dev
Added tag(s) bookworm and sid.
> found 1016401 ncview/2.1.8+ds-4
Bug #1016401 {Done: Bas Couwenberg } [src:ncview] switch 
build depends on libnetpbm10-dev to libnetpbm-dev
Marked as found in versions ncview/2.1.8+ds-4.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1016401: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016401
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#1014104: marked as done (mothur: autopkgtest regression: did not complete cluster.)

2022-08-06 Thread Debian Bug Tracking System
Your message dated Sat, 06 Aug 2022 16:05:11 +
with message-id 
and subject line Bug#1014104: fixed in mothur 1.48.0-2
has caused the Debian Bug report #1014104,
regarding mothur: autopkgtest regression: did not complete cluster.
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1014104: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1014104
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---

Source: mothur
Version: 1.48.0-1
Severity: serious
User: debian...@lists.debian.org
Usertags: regression

Dear maintainer(s),

With a recent upload of mothur the autopkgtest of mothur fails in 
testing when that autopkgtest is run with the binary packages of mothur 
from unstable. It passes when run with only packages from testing. In 
tabular form:


   passfail
mothur from testing1.48.0-1
all others from testingfrom testing

I copied some of the output at the bottom of this report.

Currently this regression is blocking the migration to testing [1]. Can 
you please investigate the situation and fix it?


More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=mothur

https://ci.debian.net/data/autopkgtest/testing/amd64/m/mothur/23197987/log.gz

Linux version

Using ReadLine
mothur v.1.48.0
Last updated: 5/20/22
by
Patrick D. Schloss

Department of Microbiology & Immunology

University of Michigan
http://www.mothur.org

When using, please cite:
Schloss, P.D., et al., Introducing mothur: Open-source, 
platform-independent, community-supported software for describing and 
comparing microbial communities. Appl Environ Microbiol, 2009. 
75(23):7537-41.


Distributed under the GNU General Public License

Type 'help()' for information on the commands that are available

For questions and analysis support, please visit our forum at 
https://forum.mothur.org


Type 'quit()' to exit program

[NOTE]: Setting random seed to 19760620.

Batch Mode



mothur > unique.seqs(fasta=HA.fasta)
599 259

Output File Names: HA.unique.fasta
HA.count_table


mothur > dist.seqs(fasta=HA.unique.fasta, countends=F, cutoff=0.01)

Using 2 processors.

SequenceTimeNum_Dists_Below_Cutoff
0   0   0
200 0   3443
100 0   5025
258 0   15965
182 0   16617

It took 0 secs to find distances for 259 sequences. 32582 distances 
below cutoff 0.01.



Output File Names: HA.unique.dist


mothur > cluster(method=furthest, column=HA.unique.dist, name=HA.names, 
cutoff=0.01, precision=1000)

Unable to open HA.names. Trying mothur's executable directory HA.names.
Unable to open HA.names.
Unable to open HA.names

Using 2 processors.
[ERROR]: did not complete cluster.

mothur > summary.single(list=HA.unique.fn.list, calc=nseqs-sobs-chao, 
label=unique-0.001-0.003-0.005-0.008)
Unable to open HA.unique.fn.list. Trying mothur's executable directory 
HA.unique.fn.list.

Unable to open HA.unique.fn.list.
Unable to open HA.unique.fn.list
No valid current files. You must provide a list, sabund, rabund or 
shared file before you can use the collect.single command.

[ERROR]: did not complete summary.single.

mothur > heatmap.bin(scale=linear, label=unique-0.001-0.003)
No valid current files. You must provide a list, sabund, rabund, 
relabund or shared file.

[ERROR]: did not complete heatmap.bin.

mothur > rarefaction.single(calc=sobs-chao, label=unique-0.001-0.003, 
freq=10)
No valid current files. You must provide a list, sabund, rabund or 
shared file before you can use the collect.single command.


Using 2 processors.
[ERROR]: did not complete rarefaction.single.

mothur > quit()


It took 0 seconds to run 7 commands from test.batch batch file.

Logfile : mothur.1656579650.logfile






Detected 4 [ERROR] messages, please review.



autopkgtest [09:00:51]: test run-unit-test



OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: mothur
Source-Version: 1.48.0-2
Done: Mohammed Bilal 

We believe that the bug you reported is fixed in the latest version of
mothur, which is due to

Bug#1016236: marked as done (uhd: FTBFS: awaitable.hpp:68:19: error: ‘exchange’ is not a member of ‘std’; did you mean ‘std::__atomic_impl::exchange’?)

2022-08-06 Thread Debian Bug Tracking System
Your message dated Sat, 06 Aug 2022 15:24:22 +
with message-id 
and subject line Bug#1016236: fixed in uhd 4.2.0.1+ds1-1
has caused the Debian Bug report #1016236,
regarding uhd: FTBFS: awaitable.hpp:68:19: error: ‘exchange’ is not a member of 
‘std’; did you mean ‘std::__atomic_impl::exchange’?
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1016236: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016236
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: uhd
Version: 4.2.0.0+ds1-3
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20220728 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> /usr/bin/c++ -DBOOST_ASIO_DISABLE_STD_EXPERIMENTAL_STRING_VIEW 
> -DBOOST_ASIO_HAS_STD_STRING_VIEW -DBOOST_ERROR_CODE_HEADER_ONLY 
> -DHAVE_CONFIG_H -DHAVE_DPDK -DUHD_LOG_CONSOLE_COLOR -DUHD_LOG_CONSOLE_LEVEL=2 
> -DUHD_LOG_FILE_LEVEL=2 -DUHD_LOG_MIN_LEVEL=1 
> -I/<>/obj-x86_64-linux-gnu/include 
> -I/<>/host/include -I/<>/host/lib/include 
> -I/<>/obj-x86_64-linux-gnu/lib/include 
> -I/<>/host/lib/deps/flatbuffers/include 
> -I/<>/obj-x86_64-linux-gnu/lib/ic_reg_maps 
> -I/<>/host/lib/convert 
> -I/<>/obj-x86_64-linux-gnu/lib/convert 
> -I/<>/host/lib/usrp 
> -I/<>/host/lib/usrp/common/ad9361_driver 
> -I/<>/host/lib/usrp/common -I/usr/include/dpdk 
> -I/usr/include/libnl3 -I/usr/include/dpdk/../x86_64-linux-gnu/dpdk 
> -I/usr/include/x86_64-linux-gnu/dpdk 
> -I/<>/obj-x86_64-linux-gnu/lib/transport/nirio/lvbitx 
> -I/usr/include/libusb-1.0 -I/<>/host/lib/transport/uhd-dpdk 
> -I/<>/host/lib/deps/rpclib/include 
> -I/<>/host/lib/deps/rpclib/include/rpc -g -O2 
> -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat 
> -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden 
> -fvisibility-inlines-hidden -fPIC   -Wall -Wextra -Wsign-compare -std=gnu++20 
> -MD -MT 
> lib/deps/rpclib/CMakeFiles/uhd_rpclib.dir/lib/rpc/detail/server_session.cc.o 
> -MF 
> lib/deps/rpclib/CMakeFiles/uhd_rpclib.dir/lib/rpc/detail/server_session.cc.o.d
>  -o 
> lib/deps/rpclib/CMakeFiles/uhd_rpclib.dir/lib/rpc/detail/server_session.cc.o 
> -c /<>/host/lib/deps/rpclib/lib/rpc/detail/server_session.cc
> In file included from /usr/include/boost/asio.hpp:23,
>  from 
> /<>/host/lib/deps/rpclib/include/rpc/detail/server_session.h:6,
>  from 
> /<>/host/lib/deps/rpclib/lib/rpc/detail/server_session.cc:1:
> /usr/include/boost/asio/awaitable.hpp: In constructor 
> ‘boost::asio::awaitable::awaitable(boost::asio::awaitable Executor>&&)’:
> /usr/include/boost/asio/awaitable.hpp:68:19: error: ‘exchange’ is not a 
> member of ‘std’; did you mean ‘std::__atomic_impl::exchange’?
>68 | : frame_(std::exchange(other.frame_, nullptr))
>   |   ^~~~
> In file included from /usr/include/c++/12/bits/shared_ptr_atomic.h:33,
>  from /usr/include/c++/12/memory:78,
>  from /usr/include/boost/asio/associated_allocator.hpp:19,
>  from /usr/include/boost/asio.hpp:20:
> /usr/include/c++/12/bits/atomic_base.h:976:7: note: 
> ‘std::__atomic_impl::exchange’ declared here
>   976 |   exchange(_Tp* __ptr, _Val<_Tp> __desired, memory_order __m) 
> noexcept
>   |   ^~~~


The full build log is available from:
http://qa-logs.debian.net/2022/07/28/uhd_4.2.0.0+ds1-3_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220728;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220728&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: uhd
Source-Version: 4.2.0.1+ds1-1
Done: A. Maitland Bottoms 

We believe that the bug you reported is fixed in the latest version of
uhd, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one i

Bug#1016454: marked as done (megadepth: autopkgtest failure on s390x: segmentation fault)

2022-08-06 Thread Debian Bug Tracking System
Your message dated Sat, 06 Aug 2022 15:21:15 +
with message-id 
and subject line Bug#1016454: fixed in megadepth 1.2.0-4
has caused the Debian Bug report #1016454,
regarding megadepth: autopkgtest failure on s390x: segmentation fault
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1016454: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016454
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---

Source: megadepth
Version: 1.2.0-3
Severity: serious
User: debian...@lists.debian.org
Usertags: fails-always

Dear maintainer(s),

You recently added an autopkgtest to your package megadepth, great. 
However, it fails on s390x. Currently this failure is blocking the 
migration to testing [1]. Can you please investigate the situation and 
fix it?


I copied some of the output at the bottom of this report.

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=megadepth

https://ci.debian.net/data/autopkgtest/testing/s390x/m/megadepth/23583699/log.gz

Running Tests
Test 1
building whole annotation region map done
2 chromosomes for annotated regions read
0 chromosomes for annotated regions read, collapsed
total number of annotations in collapsed: 0
Processing BAM: "tests/test_noprefix.bam"
/tmp/autopkgtest-lxc.gmfzuwos/downtmp/build.jJn/src/debian/tests/run-unit-test: 
line 33:  1590 Segmentation fault  megadepth tests/test_noprefix.bam 
--prefix test.bam --threads 4 --bigwig --auc --min-unique-qual 10 
--annotation tests/test_exons.bed --frag-dist --alts --include-softclip 
--only-polya --read-ends --test-polya --no-annotation-stdout 
--no-auc-stdout --filter-out 260 --add-chr-prefix human

autopkgtest [04:42:40]: test run-unit-test



OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: megadepth
Source-Version: 1.2.0-4
Done: Mohammed Bilal 

We believe that the bug you reported is fixed in the latest version of
megadepth, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1016...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Mohammed Bilal  (supplier of updated megadepth package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 06 Aug 2022 18:13:55 +0530
Source: megadepth
Architecture: source
Version: 1.2.0-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Mohammed Bilal 
Closes: 1016454
Changes:
 megadepth (1.2.0-4) unstable; urgency=medium
 .
   * Team upload.
   * d/t/control : disable tests on s390 (Closes: #1016454)
Checksums-Sha1:
 72d1441ac3bb2c2a0d27ef4186ac1b207037e254 2035 megadepth_1.2.0-4.dsc
 3a0ce65d432442402716816345bdee247112f5e5 8764 megadepth_1.2.0-4.debian.tar.xz
 8ca44be420b2fd7a4459e16e0bcacadd0eb071d1 7359 megadepth_1.2.0-4_amd64.buildinfo
Checksums-Sha256:
 f20f96fcb58c9be9d2c4195fc6e26aa912b3d5ee09ac3c6de26207c232d57ea4 2035 
megadepth_1.2.0-4.dsc
 4270c1f25640387cc3ce3bd529708a0bcfaa06f6ee6f36d8a6fae984b26b765a 8764 
megadepth_1.2.0-4.debian.tar.xz
 1e206a0b1789037295d18c7b730b08d3eb93f010e34a74a55e4ee65705928aa5 7359 
megadepth_1.2.0-4_amd64.buildinfo
Files:
 fdba54b0f05700d9950570a9b275f1cd 2035 science optional megadepth_1.2.0-4.dsc
 19adaaa0c00642f0cba2ed0bd4e122ed 8764 science optional 
megadepth_1.2.0-4.debian.tar.xz
 354b08d1d10ff52cf8d1355154ba0b25 7359 science optional 
megadepth_1.2.0-4_amd64.buildinfo

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Dp5X42wdXjk9+j6YB8zHTCgXN5d06NKRW0gsKwwy3Co5R2QWQ5fetnUT0liDJVcA
W9FDFrZfMITHbcr+20xZhzbxWSds6IusWh6x6fPVT7BDC3V4SNx8OS7E

Bug#1011165: org.h2.jdbc.JdbcSQLSyntaxErrorException: schema "MEDIATHEKVIEW" not found

2022-08-06 Thread Helge Kreutzmann
Hello Markus,
On Tue, May 17, 2022 at 10:09:08PM +0200, Markus Koschany wrote:
> Control: severity -1 serious
> 
> Am Dienstag, dem 17.05.2022 um 21:59 +0200 schrieb mt...@nurfuerspam.de:
> > Package: mediathekview
> > Version: 13.2.1-4
> > Severity: important
> > 
> > Dear Maintainer,
> > 
> > after libh2-java was updated from version 2.1.210+really1.4.197-1 to 
> > 2.1.212-
> > 1
> > there is an enormous occurrence of the following error exceptions when
> > starting mediathekview:
> 
> Hello and thanks for the report. Currently this cannot be avoided because we
> had to move forward with the h2 database in Debian. The latest version of
> mediathekview should not require h2 anymore. I don't have the time to package 
> a
> new upstream release right now but if someone wants to beat me to it, please 
> go
> ahead and mark yourself as the owner of this bug report.

I hope that you'll have some time so that mediathekview is shipped in
Testing/Futures stables again.

I tried to have a look at it (though I've really no clue about java
and building java progs) and unfortunately the situation is worse than
I thought.

To save others time, that's what I tried:

1) Using the existing debian directory with or without applying
   patches no longer works (this is what I expected).

2) A direct ("upstream") build also fails (and the documentation on
   building is very terse) and on a quick search I could not find a
   workaround.


Direct build:
./mvnw compile

…
Downloaded from central: 
https://repo.maven.apache.org/maven2/org/openjfx/javafx-graphics/19-ea+7/javafx-graphics-19-ea+7-linux.jar
 (4.8 MB at 1.3 MB/s)
[INFO] 
[INFO] BUILD FAILURE
[INFO] 
[INFO] Total time:  10.034 s
[INFO] Finished at: 2022-07-20T14:49:04+02:00
[INFO] 
[ERROR] Failed to execute goal on project MediathekView: Could not resolve 
dependencies for project de.mediathekview:MediathekView:jar:13.9.1: Could not 
find artifact airsquared:JMacNotification:jar:1.1 in local-maven-repository 
(file:tmp/mtvb2/MediathekView-13.9.1/maven-repository) -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e 
switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please 
read the following articles:
[ERROR] [Help 1] 
http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException

and indeed, 
/tmp/mtvb2/MediathekView-13.9.1/maven-repository/airsquared/JMacNotification/1.1/JMacNotification-1.1.jar
does not exists, and even worse (explaining the failure):
https://repo.maven.apache.org/maven2/airsquared/JMacNotification/1.1/JMacNotification-1.1.jar
 is 404 (does not exist)

I could find maybe a read only copy here:
https://github.com/mediathekview/MediathekViewArchiv/blob/master/maven-repository/airsquared/JMacNotification/1.1/JMacNotification-1.1.jar

So this would require verification and then somehow to be included 
into the build. 

Maybe this helps getting the ball rolling …

Greetings

  Helge

P.S. Besides the errors the current version still seems to work

-- 
  Dr. Helge Kreutzmann deb...@helgefjell.de
   Dipl.-Phys.   http://www.helgefjell.de/debian.php
64bit GNU powered gpg signed mail preferred
   Help keep free software "libre": http://www.ffii.de/


signature.asc
Description: PGP signature


Bug#1016750: sbcl breaks cl-ironclad autopkgtest on armhf: Heap exhausted, game over.

2022-08-06 Thread Paul Gevers

Source: sbcl, cl-ironclad
Control: found -1 sbcl/2:2.2.6-2
Control: found -1 cl-ironclad/0.57-1
Severity: serious
Tags: sid bookworm
User: debian...@lists.debian.org
Usertags: breaks needs-update

Dear maintainer(s),

With a recent upload of sbcl the autopkgtest of cl-ironclad fails in 
testing when that autopkgtest is run with the binary packages of sbcl 
from unstable. It passes when run with only packages from testing. In 
tabular form:


   passfail
sbcl   from testing2:2.2.6-2
cl-ironcladfrom testing0.57-1
all others from testingfrom testing

I copied some of the output at the bottom of this report.

Currently this regression is blocking the migration of sbcl to testing 
[1]. Due to the nature of this issue, I filed this bug report against 
both packages. Can you please investigate the situation and reassign the 
bug to the right package?


More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=sbcl

https://ci.debian.net/data/autopkgtest/testing/armhf/c/cl-ironclad/24381695/log.gz

; wrote 
/tmp/autopkgtest-lxc.d2c27h4h/downtmp/autopkgtest_tmp/usr/share/common-lisp/source/ironclad/src/ciphers/tea-tmp93OFNPHA.fasl

; compilation finished in 0:00:00.160
; compiling file 
"/usr/share/common-lisp/source/ironclad/src/ciphers/threefish.lisp" 
(written 18 FEB 2022 01:39:10 PM):

Heap exhausted during garbage collection: 16 bytes available, 48 requested.
Immobile Object Counts
 Gen   GF type  fdefn symbol   code  Boxed   ConsRaw   Code  SmMix 
 Mixed  LgRaw LgCode  LgMix Waste%   AllocTrig   Dirty GCs 
Mem-age
  1 00  0  0  0   7121939   9668  5273 
   827  0  0 17   19.96186748032499253   18850   1 
 1.1503
  2 00  0  0  0  19865   2766  12586 84836 
  1681 10 34127   11.7   137430448 5368709   23089   0 
 0.9496
  3 00  0  0  0  45116   7190   7447604   3552 
  16732394673311.0   270091288 2007806   0 
 0.4559
  4 00  0  0  0  0  0  0  0  0 
 0  0  0  00.0   0 200   0   0 
 0.
  5 00  0  0  0  0  0  0  0  0 
 0  0  0  00.0   0 200   0   0 
 0.
  6 00  0  0  0   1370471   1242   3507314 
402551342811.930584464 200 251   0 
 0.
Tot 00  0  0  0  73472  11366  30943   4200   4975 
 42215046357566.9   499973680 [93.1% of 536870912 max]

GC control variables:
   *GC-INHIBIT* = true
   *GC-PENDING* = true
fatal error encountered in SBCL pid 1357:
Heap exhausted, game over.

   0: 0xf746478c pc=0x98 {0x4f0380b8+b0fc7fe0} {code_serialno=3901}
   1: 0xf7464730 pc=0x4f005760 {0x4f005000+0760} (FLET 
"WITHOUT-GCING-BODY-5" :IN SB-KERNEL::SUB-GC)
   2: 0xf74646d4 pc=0x4f0053f8 {0x4f005000+03f8} (FLET 
"WITHOUT-INTERRUPTS-BODY-1" :IN SB-KERNEL::SUB-GC)

   3: 0xf7464678 pc=0x4f005108 {0x4f005000+0108} SB-KERNEL::SUB-GC
   4: 0xf746466c pc=(nil) LRA=0x3e2e75: [I]0xf7464654 
pc=0x3e4d8 {0x4fb3f240+b04ff298} {code_serialno=f5f}

   6: 0xf7464634 pc=0x5028c858 {0x5028c4b0+03a8} SB-C::MAKE-WIRED-TN
   7: 0xf7464604 pc=0x4fd9a348 {0x4fd9a030+0318} 
SB-C::IR2-CONVERT-FULL-CALL-ARGS
   8: 0xf74645c4 pc=0x4f8506f8 {0x4f8505c8+0130} 
SB-C::IR2-CONVERT-FIXED-FULL-CALL
   9: 0xf74645b4 pc=0x4f3d8b18 {0x4f3d8990+0188} 
SB-C::IR2-CONVERT-FULL-CALL
  10: 0xf7464598 pc=0x4f6fe720 {0x4f6fda90+0c90} 
SB-C::IR2-CONVERT-BLOCK

  11: 0xf7464584 pc=0x4f2c8f58 {0x4f2c8dc8+0190} SB-C::IR2-CONVERT
  12: 0xf7464550 pc=0x504637a8 {0x50463198+0610} 
SB-C::%COMPILE-COMPONENT
  13: 0xf7464538 pc=0x5041c820 {0x5041c258+05c8} 
SB-C::COMPILE-COMPONENT

  14: 0xf7464514 pc=0x5037ca10 {0x5037c7b8+0258} SB-C::COMPILE-TOPLEVEL
  15: 0xf7464500 pc=0x503f0eb8 {0x503f0c28+0290} 
SB-C::CONVERT-AND-MAYBE-COMPILE
  16: 0xf74644b4 pc=0x50393270 {0x50392a10+0860} 
SB-C::PROCESS-TOPLEVEL-FORM
  17: 0xf746449c pc=0x50457490 {0x504573a0+00f0} 
SB-C::PROCESS-TOPLEVEL-PROGN
  18: 0xf7464450 pc=0x50393188 {0x50392a10+0778} 
SB-C::PROCESS-TOPLEVEL-FORM
  19: 0xf7464404 pc=0x50393408 {0x50392a10+09f8} 
SB-C::PROCESS-TOPLEVEL-FORM
  20: 0xf74643b8 pc=0x50393408 {0x50392a10+09f8} 
SB-C::PROCESS-TOPLEVEL-FORM
  21: 0xf7464334 pc=0x502f60e0 {0x502f3b20+25c0} (LAMBDA 
(SB-KERNEL::FORM &KEY :CURRENT-INDEX &ALLOW-OTHER-KEYS) :IN 
SB-C::SUB-COMPILE-FILE)
  22: 0xf74642c0 pc=0x4f0c5038 {0x4f0c49a8+0690} 
SB-C::%DO-FORMS-FROM-INFO
  23: 0xf7464244 pc=0x502f3ea0 {0x502f3b20+0380} (FLET "LAMBDA0" 
:IN "SYS:SRC;COMPILER;MAIN.L

Bug#1016749: pytango: autopkgtest failure on armel

2022-08-06 Thread Paul Gevers

Source: pytango
Version: 9.3.4-2
Severity: serious
User: debian...@lists.debian.org
Usertags: fails-always

Dear maintainer(s),

You recently added an autopkgtest to your package pytango, great. 
However, it fails on armel. Currently this failure is blocking the 
migration to testing [1]. Can you please investigate the situation and 
fix it?


I copied some of the output at the bottom of this report.

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=pytango

https://ci.debian.net/data/autopkgtest/testing/armel/p/pytango/23495376/log.gz

=== FAILURES 
===
___ test_subscribe_change_event[Synchronous] 
___

event_device = EventDevice(test/nodb/eventdevice)

def test_subscribe_change_event(event_device):
results = []
def callback(evt):
results.append(evt.attr_value.value)
# Subscribe
eid = event_device.subscribe_event(
"attr", EventType.CHANGE_EVENT, callback, wait=True)
assert eid == 1
# Trigger an event
event_device.command_inout("send_event", wait=True)
# Wait for tango event
retries = 20
for _ in range(retries):
event_device.read_attribute("state", wait=True)
if len(results) > 1:
break
time.sleep(0.05)
# Test the event values

  assert results == [0., 1.]

E   assert [0.0] == [0.0, 1.0]
E Right contains one more item: 1.0
E Full diff:
E - [0.0, 1.0]
E + [0.0]

tests/test_event.py:115: AssertionError
 Captured stdout setup 
-

Ready to accept request
 Captured stderr setup 
-

Can't create notifd event supplier. Notifd event not available
_ test_push_event_with_timestamp[Synchronous] 
__

event_device = EventDevice(test/nodb/eventdevice)

def test_push_event_with_timestamp(event_device):
string = StringIO()
ec = EventCallback(fd=string)
# Subscribe
eid = event_device.subscribe_event(
"attr", EventType.CHANGE_EVENT, ec, wait=True)
assert eid == 1
# Trigger an event
event_device.command_inout("send_event_with_timestamp", wait=True)
# Wait for tango event
retries = 20
for _ in range(retries):
event_device.read_attribute("state", wait=True)
if len(ec.get_events()) > 1:
break
time.sleep(0.05)
# Test the event values and timestamp
results = [evt.attr_value.value for evt in ec.get_events()]

  assert results == [0., 2.]

E   assert [0.0] == [0.0, 2.0]
E Right contains one more item: 2.0
E Full diff:
E - [0.0, 2.0]
E + [0.0]

tests/test_event.py:191: AssertionError
 Captured stdout setup 
-

Ready to accept request
 Captured stderr setup 
-

Can't create notifd event supplier. Notifd event not available
=== warnings summary 
===

tests/test_client.py:19

/tmp/autopkgtest-lxc.q395dj8v/downtmp/autopkgtest_tmp/tests/test_client.py:19: 
DeprecationWarning: The distutils package is deprecated and slated for 
removal in Python 3.12. Use setuptools or check PEP 632 for potential 
alternatives

from distutils.spawn import find_executable

-- Docs: https://docs.pytest.org/en/stable/warnings.html
=== short test summary info 


FAILED tests/test_event.py::test_subscribe_change_event[Synchronous]
FAILED tests/test_event.py::test_push_event_with_timestamp[Synchronous]
== 2 failed, 1033 passed, 26 xfailed, 1 warning in 263.04s (0:04:23) 
===

autopkgtest [07:52:48]: test command1



OpenPGP_signature
Description: OpenPGP digital signature


Processed: sbcl breaks cl-ironclad autopkgtest on armhf: Heap exhausted, game over.

2022-08-06 Thread Debian Bug Tracking System
Processing control commands:

> found -1 sbcl/2:2.2.6-2
Bug #1016750 [src:sbcl, src:cl-ironclad] sbcl breaks cl-ironclad autopkgtest on 
armhf: Heap exhausted, game over.
Marked as found in versions sbcl/2:2.2.6-2.
> found -1 cl-ironclad/0.57-1
Bug #1016750 [src:sbcl, src:cl-ironclad] sbcl breaks cl-ironclad autopkgtest on 
armhf: Heap exhausted, game over.
Marked as found in versions cl-ironclad/0.57-1.

-- 
1016750: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016750
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Processed (with 1 error): forcibly merging 1016356 1004640

2022-08-06 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> forcemerge 1016356 1004640
Bug #1016356 [unpaper] FTBFS: unpaper fails to build against ffmpeg 5.0
Unable to merge bugs because:
package of #1004640 is 'src:unpaper' not 'unpaper'
Failed to forcibly merge 1016356: Did not alter merged bugs.

> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1004640: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1004640
1016356: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016356
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#1016748: mathcomp-analysis: FTBFS: test failure: Error: apply-w-params

2022-08-06 Thread Sebastian Ramacher
Source: mathcomp-analysis
Version: 0.5.2-1
Severity: serious
Tags: ftbfs
Justification: fails to build from source (but built successfully in the past)

Rebuilds of mathcomp-analysis failed:

COQC theories/realfun.v
COQC theories/exp.v
COQC theories/lebesgue_measure.v
File "./theories/lebesgue_measure.v", line 133, characters 0-76:
Warning: Casts are ignored in patterns [cast-in-pattern,automation]
File "./theories/lebesgue_measure.v", line 133, characters 0-76:
Warning: Casts are ignored in patterns [cast-in-pattern,automation]
COQC theories/lebesgue_integral.v
COQC theories/trigo.v
File "./theories/lebesgue_integral.v", line 201, characters 0-51:
Error: apply-w-params

make[3]: *** [Makefile.coq:764: theories/lebesgue_integral.vo] Error 1
make[3]: *** Waiting for unfinished jobs
make[2]: *** [Makefile.coq:387: all] Error 2


Cheers
-- 
Sebastian Ramacher



Processed: Reassign to sshuttle from setuptools-scm

2022-08-06 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> reassign 1015044 sshutle 1.0.1-1
Bug #1015044 [python3-setuptools-scm] sshuttle: FTBFS: dpkg-buildpackage: 
error: dpkg-source -b . subprocess returned exit status 2
Bug reassigned from package 'python3-setuptools-scm' to 'sshutle'.
Warning: Unknown package 'sshutle'
Warning: Unknown package 'sshutle'
No longer marked as found in versions setuptools-scm/7.0.5-1.
Warning: Unknown package 'sshutle'
Warning: Unknown package 'sshutle'
Ignoring request to alter fixed versions of bug #1015044 to the same values 
previously set
Warning: Unknown package 'sshutle'
Bug #1015044 [sshutle] sshuttle: FTBFS: dpkg-buildpackage: error: dpkg-source 
-b . subprocess returned exit status 2
Warning: Unknown package 'sshutle'
There is no source info for the package 'sshutle' at version '1.0.1-1' with 
architecture ''
Unable to make a source version for version '1.0.1-1'
Marked as found in versions 1.0.1-1.
Warning: Unknown package 'sshutle'
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1015044: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1015044
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#1016746: sbcl breaks cffi autopkgtest: /usr/bin/ld: cannot find -lzstd: No such file or directory

2022-08-06 Thread Paul Gevers

Source: sbcl, cffi
Control: found -1 sbcl/2:2.2.6-2
Control: found -1 cffi/1:0.24.1-2
Severity: serious
Tags: sid bookworm
User: debian...@lists.debian.org
Usertags: breaks needs-update

Dear maintainer(s),

With a recent upload of sbcl the autopkgtest of cffi fails in testing 
when that autopkgtest is run with the binary packages of sbcl from 
unstable. It passes when run with only packages from testing. In tabular 
form:


   passfail
sbcl   from testing2:2.2.6-2
cffi   from testing1:0.24.1-2
all others from testingfrom testing

I copied some of the output at the bottom of this report.

Currently this regression is blocking the migration of sbcl to testing 
[1]. Due to the nature of this issue, I filed this bug report against 
both packages. Can you please investigate the situation and reassign the 
bug to the right package?


More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=sbcl

https://ci.debian.net/data/autopkgtest/testing/amd64/c/cffi/24381426/log.gz

; wrote 
/tmp/autopkgtest-lxc.qpgu5j9b/downtmp/autopkgtest_tmp/usr/share/common-lisp/source/cl-cffi/tests/grovel-tmpFNKDE5XP.fasl

; compilation finished in 0:00:00.015
;;; running tests (uncompiled)
Doing 332 pending tests of 332 tests total.
 LOAD-CORE-FOUNDATION FUNCALL.CHAR FUNCALL.INT.1 FUNCALL.INT.2 FUNCALL.LONG
 FUNCALL.LONG-LONG FUNCALL.UNSIGNED-LONG-LONG FUNCALL.FLOAT FUNCALL.DOUBLE
 FUNCALL.STRING.1 FUNCALL.STRING.2 FUNCALL.STRING.3 
FUNCALL.VARARGS.NOSTDLIB

 FUNCALL.VARARGS.CHAR FUNCALL.VARARGS.INT FUNCALL.VARARGS.LONG
 FUNCALL.VARARGS.DOUBLE FUNCALL.VARARGS.STRING FUNCALL.DOUBLE26 
FUNCALL.FLOAT26

 FUNCALL.F-S-P.1 FUNCALL.NIL-SKIP FUNCALL.POINTER-NOT-NIL
 DEFCFUN.PARSE-NAME-AND-OPTIONS.1 DEFCFUN.PARSE-NAME-AND-OPTIONS.2
 DEFCFUN.PARSE-NAME-AND-OPTIONS.3 DEFCFUN.PARSE-NAME-AND-OPTIONS.4
 DEFCFUN.PARSE-NAME-AND-OPTIONS.5 DEFCFUN.PARSE-NAME-AND-OPTIONS.6
 DEFCFUN.PARSE-NAME-AND-OPTIONS.7 DEFCFUN.PARSE-NAME-AND-OPTIONS.8
 TRANSLATE-UNDERSCORE-SEPARATED-NAME.TO-SYMBOL
 TRANSLATE-UNDERSCORE-SEPARATED-NAME.TO-STRING
 TRANSLATE-CAMELCASE-NAME.TO-SYMBOL TRANSLATE-CAMELCASE-NAME.TO-STRING
 TRANSLATE-CAMELCASE-NAME.TO-STRING-UPPER
 TRANSLATE-CAMELCASE-NAME.TO-SYMBOL-SPECIAL
 TRANSLATE-CAMELCASE-NAME.TO-STRING-SPECIAL 
TRANSLATE-NAME-FROM-FOREIGN.FUNCTION

 TRANSLATE-NAME-FROM-FOREIGN.VAR TRANSLATE-NAME-TO-FOREIGN.FUNCTION
 TRANSLATE-NAME-TO-FOREIGN.VAR DEFCFUN.CHAR DEFCFUN.DOCSTRING DEFCFUN.INT
 DEFCFUN.LONG DEFCFUN.LONG-LONG DEFCFUN.UNSIGNED-LONG-LONG DEFCFUN.FLOAT
 DEFCFUN.DOUBLE DEFCFUN.STRING.1 DEFCFUN.STRING.2 DEFCFUN.STRING.3
 DEFCFUN.NOARGS DEFCFUN.NOOP DEFCFUN.VARARGS.NOSTDLIB 
DEFCFUN.VARARGS.DOCSTRINGS

 DEFCFUN.VARARGS.CHAR DEFCFUN.VARARGS.SHORT DEFCFUN.VARARGS.INT
 DEFCFUN.VARARGS.LONG DEFCFUN.VARARGS.FLOAT DEFCFUN.VARARGS.DOUBLE
 DEFCFUN.VARARGS.STRING DEFCFUN.BFF.1 DEFCFUN.BFF.2 DEFCFUN.UNDEFINED
 DEFCFUN.DOUBLE26 DEFCFUN.FLOAT26 CALLBACKS.CHAR CALLBACKS.UNSIGNED-CHAR
 CALLBACKS.SHORT CALLBACKS.UNSIGNED-SHORT CALLBACKS.INT 
CALLBACKS.UNSIGNED-INT

 CALLBACKS.LONG CALLBACKS.UNSIGNED-LONG CALLBACKS.LONG-LONG
 CALLBACKS.UNSIGNED-LONG-LONG CALLBACKS.FLOAT CALLBACKS.DOUBLE 
CALLBACKS.POINTER

 CALLBACKS.STRING CALLBACKS.STRING-NOT-DOCSTRING CALLBACKS.NIL-FOR-NULL
 CALLBACKS.QSORT CALLBACKS.VOID CALLBACKS.FUNCALL.1 CALLBACKS.FUNCALL.2
 CALLBACKS.BFF.1 CALLBACKS.BFF.2 CALLBACKS.NON-EXISTANT CALLBACKS.DOUBLE26
 CALLBACKS.DOUBLE26.FUNCALL CALLBACKS.FLOAT26 CALLBACKS.FLOAT26.FUNCALL
 CALLBACKS.UNINTERNED FOREIGN-GLOBALS.REF.CHAR 
FOREIGN-GLOBALS.REF.UNSIGNED-CHAR

 FOREIGN-GLOBALS.REF.SHORT FOREIGN-GLOBALS.REF.UNSIGNED-SHORT
 FOREIGN-GLOBALS.REF.INT FOREIGN-GLOBALS.REF.UNSIGNED-INT
 FOREIGN-GLOBALS.REF.LONG FOREIGN-GLOBALS.REF.UNSIGNED-LONG
 FOREIGN-GLOBALS.REF.FLOAT FOREIGN-GLOBALS.REF.DOUBLE
 FOREIGN-GLOBALS.REF.POINTER FOREIGN-GLOBALS.REF.STRING
 FOREIGN-GLOBALS.REF.LONG-LONG FOREIGN-GLOBALS.REF.UNSIGNED-LONG-LONG
 FOREIGN-GLOBALS.SET.INT FOREIGN-GLOBALS.SET.STRING
 FOREIGN-GLOBALS.SET.LONG-LONG FOREIGN-GLOBALS.GET-VAR-POINTER.1
 FOREIGN-GLOBALS.GET-VAR-POINTER.2 FOREIGN-GLOBALS.REF.UPPERCASEINT1
 FOREIGN-GLOBALS.REF.UPPER-CASE-INT1 FOREIGN-GLOBALS.REF.MIXEDCASEINT1
 FOREIGN-GLOBALS.REF.MIXED-CASE-INT1 FOREIGN-GLOBALS.REF.UPPERCASEINT2
 FOREIGN-GLOBALS.REF.UPPER-CASE-INT2 FOREIGN-GLOBALS.REF.MIXEDCASEINT2
 FOREIGN-GLOBALS.REF.MIXED-CASE-INT2 FOREIGN-GLOBALS.REF.UPPERCASEINT3
 FOREIGN-GLOBALS.REF.UPPER-CASE-INT3 FOREIGN-GLOBALS.REF.MIXEDCASEINT3
 FOREIGN-GLOBALS.REF.MIXED-CASE-INT3 FOREIGN-GLOBALS.SYMBOL-NAME
 FOREIGN-GLOBALS.READ-ONLY.1 DEFCVAR.DOCSTRING FOREIGN-GLOBALS.UNDEFINED.1
 FOREIGN-GLOBALS.ERROR.1 DEREF.CHAR DEREF.UNSIGNED-CHAR DEREF.SHORT
 DEREF.UNSIGNED-SHORT DEREF.INT DEREF.UNSIGNED-INT DEREF.LONG
 DEREF.UNSIGNED-LONG DEREF.LONG-LONG DEREF.UNSIGNED-LONG-LONG DEREF.FLOAT.1
 DEREF.FLOAT.2 DEREF

Processed: sbcl breaks cffi autopkgtest: /usr/bin/ld: cannot find -lzstd: No such file or directory

2022-08-06 Thread Debian Bug Tracking System
Processing control commands:

> found -1 sbcl/2:2.2.6-2
Bug #1016746 [src:sbcl, src:cffi] sbcl breaks cffi autopkgtest: /usr/bin/ld: 
cannot find -lzstd: No such file or directory
Marked as found in versions sbcl/2:2.2.6-2.
> found -1 cffi/1:0.24.1-2
Bug #1016746 [src:sbcl, src:cffi] sbcl breaks cffi autopkgtest: /usr/bin/ld: 
cannot find -lzstd: No such file or directory
Marked as found in versions cffi/1:0.24.1-2.

-- 
1016746: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016746
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#1016744: vim-ultisnips: autopkgtest failure on arm64, i386 and ppc64el

2022-08-06 Thread Paul Gevers

Source: vim-ultisnips
Version: 3.2-1
Severity: serious
User: debian...@lists.debian.org
Usertags: fails-always

Dear maintainer(s),

You recently added an autopkgtest to your package vim-ultisnips, great. 
However, it fails on arm64, i386 and ppc64el. Currently this failure is 
blocking the migration to testing [1]. Can you please investigate the 
situation and fix it?


I copied some of the output at the bottom of this report.

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=vim-ultisnips

https://ci.debian.net/data/autopkgtest/testing/arm64/v/vim-ultisnips/23984911/log.gz


==
FAIL: runTest (test_ParseSnippets.ParseSnippets_ExtendsWithoutFiletype)
--
Traceback (most recent call last):
  File 
"/tmp/autopkgtest-lxc.p149hn5f/downtmp/build.kSM/src/test/vim_test_case.py", 
line 53, in runTest

self.assertRegexpMatches(self.output, self.expected_error)
AssertionError: Regex didn't match: "'extends' without file types in 
\\S+:2" not found in 'An error occured. This is either a bug in 
UltiSnips or a bug in a\nsnippet definition. If you think this is a bug, 
please report it 
to\nhttps://github.com/SirVer/ultisnips/issues/new\nPlease read and 
follow:\nhttps://github.com/SirVer/ultisnips/blob/master/CONTRIBUTING.md#reproducing-bugs\n\nFollowing 
is the full stack trace:\nTraceback (most recent call last):\n  File 
"/usr/share/nvim/site/pack/dist-bundle/opt/ultisnips/pythonx/UltiSnips/err_to_scratch_buffer.py", 
line 18, in wrapper\nreturn func(self, *args, **kwds)\n  File 
"/usr/share/nvim/site/pack/dist-bundle/opt/ultisnips/pythonx/UltiSnips/snippet_manager.py", 
line 905, in _track_change\n 
self._try_expand(autotrigger_only=True)\n  File 
"/usr/share/nvim/site/pack/dist-bundle/opt/ultisnips/pythonx/UltiSnips/snippet_manager.py", 
line 749, in _try_expand\nsnippets = self._snips(before, False, 
autotrigger_only)\n  File 
"/usr/share/nvim/site/pack/dist-bundle/opt/ultisnips/pythonx/UltiSnips/snippet_manager.py", 
line 629, in _snips\nsource.ensure(filetypes)\n  File 
"/usr/share/nvim/site/pack/dist-bundle/opt/ultisnips/pythonx/UltiSnips/snippet/source/file/base.py", 
line 31, in ensure\nself._load_snippets_for(ft)\n  File 
"/usr/share/nvim/site/pack/dist-bundle/opt/ultisnips/pythonx/UltiSnips/snippet/source/file/base.py", 
line 53, in _load_snippets_for\nself._parse_snippets(ft, fn)\n  File 
"/usr/share/nvim/site/pack/dist-bundle/opt/ultisnips/pythonx/UltiSnips/snippet/source/file/base.py", 
line 69, in _parse_snippets\nraise SnippetSyntaxError(filename, 
line_index, msg)\nUltiSnips.snippet.source.file.base.SnippetSyntaxError: 
\'extends\' without file types in 
/tmp/p\tautopkgtest-lxc.p149hn5f/downtmp/autopkgtest_tmp/UltiSnipsTest_Casenir0duuw/us/all.snippets:2'


--
Ran 560 tests in 1259.152s

FAILED (failures=1, skipped=4)
autopkgtest [05:49:55]: test with-neovim



OpenPGP_signature
Description: OpenPGP digital signature


Bug#1016743: zalign: autopkgtest failure on 32 bit architectures: Segmentation fault

2022-08-06 Thread Paul Gevers

Source: zalign
Version: 0.9.1-6
Severity: serious
User: debian...@lists.debian.org
Usertags: fails-always

Dear maintainer(s),

You recently added an autopkgtest to your package zalign, great. 
However, it fails. Currently this failure is blocking the migration to 
testing [1]. Can you please investigate the situation and fix it?


I copied some of the output at the bottom of this report.

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=zalign

https://ci.debian.net/data/autopkgtest/testing/armhf/z/zalign/23914703/log.gz

Running Tests
Test 1

Stage 1: Distribute data to all nodes
-

 # File parameters

 S sequence: 104 characters
 Filename:   dd

 T sequence: 104 characters
 Filename:   rt

 # Performance parameters

 Number of 'split' submatrices:  1
 Available nodes:1
 Horizontal block divisions:10
 Vertical block divisions:  10

 # Scoring parameters

 Match:  1
 Mismatch:  -3
 Gap Opening:   -5
 Gap Extension: -2


Stage 2: Find best scores
-

  Showing progress information for root node (rank 0):
split 1/1: ||   0%* 
  |   1%* 
  |   2%** 
 |   3%** 
 |   4%** 
 |   5%*** 
|   6%*** 
|   7% 
   |   8% 
   |   9% 
   |  10%* 
  |  11%* 
  |  12%** 
 |  13%** 
 |  14%** 
 |  15%*** 
|  16%*** 
|  17% 
   |  18% 
   |  19% 
   |  20%* 
  |  21%* 
  |  22%** 
 |  23%** 
 |  24%** 
 |  25%*** 
|  26%*** 
|  27% 
   |  28% 
   |  29% 
   |  30%* 
  |  31%* 
  |  32%** 
 |  33%** 
 |  34%** 
 |  35%*** 
|  36%*** 
|  37% 
   |  38%*

Bug#1016099: marked as done (python3-pudb: Missing urwid_readline package)

2022-08-06 Thread Debian Bug Tracking System
Your message dated Sat, 06 Aug 2022 13:45:13 +
with message-id 
and subject line Bug#1016099: fixed in pudb 2022.1.2-2
has caused the Debian Bug report #1016099,
regarding python3-pudb: Missing urwid_readline package
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1016099: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016099
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: python3-pudb
Version: 2022.1.2-1
Severity: important

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Dear Maintainer,

version 2022.1.2 introduced a new dependency on urwid_readline[0] which has not
been packaged for Debian:

Traceback (most recent call last):
  File "/usr/bin/pudb3", line 33, in 
sys.exit(load_entry_point('pudb==2022.1.2', 'console_scripts', 
'pudb3')())
  File "/usr/lib/python3/dist-packages/pudb/run.py", line 65, in main
runscript(mainpyfile, **options_kwargs)
  File "/usr/lib/python3/dist-packages/pudb/__init__.py", line 109, in 
runscript
dbg = _get_debugger(steal_output=steal_output)
  File "/usr/lib/python3/dist-packages/pudb/__init__.py", line 85, in 
_get_debugger
dbg = Debugger(**kwargs)
  File "/usr/lib/python3/dist-packages/pudb/debugger.py", line 194, in 
__init__
self.ui = DebuggerUI(self, stdin=stdin, stdout=stdout, 
term_size=term_size)
  File "/usr/lib/python3/dist-packages/pudb/debugger.py", line 830, in 
__init__
import urwid_readline
ModuleNotFoundError: No module named 'urwid_readline'


Regards,
Michael



- -- System Information:
Debian Release: bookworm/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 5.18.0-2-amd64 (SMP w/8 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=en_DK.UTF-8, LC_CTYPE=en_DK.UTF-8 (charmap=UTF-8), 
LANGUAGE=en_US:en
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages python3-pudb depends on:
ii  dpkg   1.21.9
ii  python33.10.5-3
ii  python3-pkg-resources  59.6.0-1.2
ii  python3-pygments   2.12.0+dfsg-2
ii  python3-urwid  2.1.2-2+b2

python3-pudb recommends no packages.

Versions of packages python3-pudb suggests:
ii  ipython3  7.31.1-1

- -- no debconf information

-BEGIN PGP SIGNATURE-

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Ymlhbi5vcmcACgkQ/9PIi5l90WrVLwf9HvFBN0+LUFo/Zlj4GhiqZwyaDCZh2ABo
A6eEvQcteWJl+XiJ+UI8YB6H93CppaGx87Y10q3RxnjYOvycwXtYn7AYkHA6oMwW
egINJPrs8yqd4tqZpwPLsb3w3AuI4BIGH8Pu/XQdTYMeP0R79Qvwgn6FyosbPMQz
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=kCV9
-END PGP SIGNATURE-
--- End Message ---
--- Begin Message ---
Source: pudb
Source-Version: 2022.1.2-2
Done: Josue Ortega 

We believe that the bug you reported is fixed in the latest version of
pudb, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1016...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Josue Ortega  (supplier of updated pudb package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 06 Aug 2022 06:35:53 -0600
Source: pudb
Architecture: source
Version: 2022.1.2-2
Distribution: unstable
Urgency: medium
Maintainer: Federico Ceratto 
Changed-By: Josue Ortega 
Closes: 1016099
Changes:
 pudb (2022.1.2-2) unstable; urgency=medium
 .
   * debian/control: Add python3-urwid-readline as build dependency
 (Closes: #1016099)
Checksums-Sha1:
 7c7d870713bb9b15c7888c452896335af83dcd1f 2071 pudb_2022.1.2-2.dsc
 f5a31345be43c25bd503302f653b1ba0d7961709 4548 pudb_2022.1.2-2.debian.tar.xz
 5ababf5477ab5d0a45c42490e8ad064ccf6d334d 6951 pudb_2022.1.2-2_source.buildinfo
Checksums-Sha256:
 2d0e1145874c25edb7ba4fa29e22c44ea31eb14028b367568d708114b184d628 2071 
pudb_2022.1.2-2.dsc
 08cb67a2f17c446983a20191745792d674c8759e6e8886213aea8485b160493a 4548 
pudb_2022.1.2-2.d

Bug#1016742: libcereal: autopkgtest regression: add_subdirectory given source "sandbox" which is not an existing directory

2022-08-06 Thread Paul Gevers

Source: libcereal
Version: 1.3.2+dfsg-1
Severity: serious
User: debian...@lists.debian.org
Usertags: regression

Dear maintainer(s),

With a recent upload of libcereal the autopkgtest of libcereal fails in 
testing when that autopkgtest is run with the binary packages of 
libcereal from unstable. It passes when run with only packages from 
testing. In tabular form:


   passfail
libcereal  from testing1.3.2+dfsg-1
all others from testingfrom testing

I copied some of the output at the bottom of this report.

Currently this regression is blocking the migration to testing [1]. Can 
you please investigate the situation and fix it?


More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=libcereal

https://ci.debian.net/data/autopkgtest/testing/amd64/libc/libcereal/24396353/log.gz

-- The CXX compiler identification is GNU 11.3.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Boost: 
/usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found 
version "1.74.0") found components: serialization -- boost_variant.cpp

CMake Error at CMakeLists.txt:123 (add_subdirectory):
  add_subdirectory given source "sandbox" which is not an existing 
directory.



-- Configuring incomplete, errors occurred!
See also 
"/tmp/autopkgtest-lxc.q81fqk9c/downtmp/autopkgtest_tmp/CMakeFiles/CMakeOutput.log".

make: *** No targets specified and no makefile found.  Stop.
autopkgtest [03:11:34]: test run-unit-test



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Description: OpenPGP digital signature


Bug#1016740: golang-github-cli-go-gh: autopkgtest regression: TestGQLClientDoWithContext/http_fail_request_timed_out

2022-08-06 Thread Paul Gevers

Source: golang-github-cli-go-gh
Version: 0.0.3+git20220623.91ca4ef-1
Severity: serious
User: debian...@lists.debian.org
Usertags: regression

Dear maintainer(s),

With a recent upload of golang-github-cli-go-gh the autopkgtest of 
golang-github-cli-go-gh fails in testing when that autopkgtest is run 
with the binary packages of golang-github-cli-go-gh from unstable. It 
passes when run with only packages from testing. In tabular form:


   passfail
golang-github-cli-go-gh from testing0.0.3+git20220623.91ca4ef-1
all others from testingfrom testing

I copied some of the output at the bottom of this report.

Currently this regression is blocking the migration to testing [1]. Can 
you please investigate the situation and fix it?


More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=golang-github-cli-go-gh

https://ci.debian.net/data/autopkgtest/testing/amd64/g/golang-github-cli-go-gh/24389592/log.gz


=== RUN   TestGQLClientDoWithContext/http_fail_request_canceled
gql_client_test.go:170: Error Trace:gql_client_test.go:170
Error:  An error is expected but got nil.
Test:   
TestGQLClientDoWithContext/http_fail_request_canceled
=== RUN   TestGQLClientDoWithContext/http_fail_request_timed_out
gql_client_test.go:170: Error Trace:gql_client_test.go:170
Error:  An error is expected but got nil.
	Test: 
TestGQLClientDoWithContext/http_fail_request_timed_out

--- FAIL: TestGQLClientDoWithContext (0.00s)
--- FAIL: TestGQLClientDoWithContext/http_fail_request_canceled (0.00s)
--- FAIL: TestGQLClientDoWithContext/http_fail_request_timed_out 
(0.00s)




=== RUN   TestRESTClientDoWithContext/http_fail_request_canceled
rest_client_test.go:341:Error Trace:rest_client_test.go:341
Error:  An error is expected but got nil.
	Test: 
TestRESTClientDoWithContext/http_fail_request_canceled

=== RUN   TestRESTClientDoWithContext/http_fail_request_timed_out
rest_client_test.go:341:Error Trace:rest_client_test.go:341
Error:  An error is expected but got nil.
	Test: 
TestRESTClientDoWithContext/http_fail_request_timed_out

--- FAIL: TestRESTClientDoWithContext (0.00s)
--- FAIL: TestRESTClientDoWithContext/http_fail_request_canceled 
(0.00s)
--- FAIL: TestRESTClientDoWithContext/http_fail_request_timed_out 
(0.00s)



=== RUN   TestRESTClientRequestWithContext
=== RUN   TestRESTClientRequestWithContext/http_fail_request_canceled
rest_client_test.go:394:Error Trace:rest_client_test.go:394
Error:  An error is expected but got nil.
	Test: 
TestRESTClientRequestWithContext/http_fail_request_canceled

=== RUN   TestRESTClientRequestWithContext/http_fail_request_timed_out
rest_client_test.go:394:Error Trace:rest_client_test.go:394
Error:  An error is expected but got nil.
	Test: 
TestRESTClientRequestWithContext/http_fail_request_timed_out

--- FAIL: TestRESTClientRequestWithContext (0.00s)
--- FAIL: 
TestRESTClientRequestWithContext/http_fail_request_canceled (0.00s)
--- FAIL: 
TestRESTClientRequestWithContext/http_fail_request_timed_out (0.00s)

=== RUN   TestRestPrefix
=== RUN   TestRestPrefix/github
=== RUN   TestRestPrefix/localhost
=== RUN   TestRestPrefix/enterprise
--- PASS: TestRestPrefix (0.00s)
--- PASS: TestRestPrefix/github (0.00s)
--- PASS: TestRestPrefix/localhost (0.00s)
--- PASS: TestRestPrefix/enterprise (0.00s)
FAIL
FAILgithub.com/cli/go-gh/internal/api   0.007s




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Description: OpenPGP digital signature


Bug#1016738: dt-schema: autopkgtest failure: No module named 'libfdt'

2022-08-06 Thread Paul Gevers

Source: dt-schema
Version: 2022.07-1
Severity: serious
User: debian...@lists.debian.org
Usertags: fails-always

Dear maintainer(s),

You recently added an autopkgtest to your package dt-schema, great. 
However, it fails. Currently this failure is blocking the migration to 
testing [1]. Can you please investigate the situation and fix it?


I copied some of the output at the bottom of this report. It seems you 
are missing a dependency.


More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=dt-schema

https://ci.debian.net/data/autopkgtest/testing/amd64/d/dt-schema/24372986/log.gz

=== python3.10 ===
Traceback (most recent call last):
  File 
"/tmp/autopkgtest-lxc.ard1nynt/downtmp/autopkgtest_tmp/test/test-dt-validate.py", 
line 20, in 

import dtschema
  File "/usr/lib/python3/dist-packages/dtschema/__init__.py", line 1, 
in 

from dtschema.lib import (
  File "/usr/lib/python3/dist-packages/dtschema/lib.py", line 18, in 


import dtschema.dtb
  File "/usr/lib/python3/dist-packages/dtschema/dtb.py", line 9, in 


import libfdt
ModuleNotFoundError: No module named 'libfdt'
autopkgtest [08:11:46]: test unittests



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Bug#1016732: node-sockjs throws: TypeError: Cannot read properties of undefined (reading 'addEventListener') at WebSocketReceiver.setUp

2022-08-06 Thread Nilesh Patra
Yadd,

Since you added in coffeescript patch for this package, I'd highly appreciate if
you could consider taking a look.

On Sat, 06 Aug 2022 17:54:13 +0530 Nilesh Patra  wrote:
> Package: node-sockjs
> Version: 0.3.24+~0.3.33-1
> Severity: serious
> X-Debbugs-Cc: e...@ericebrown.com
> 
> Hi,
> 
> On running shiny-server with 0.3.24+~0.3.33-1 it chokes with:
> 
> | [2022-08-06T04:59:03.613] [ERROR] shiny-server - Uncaught exception: 
> TypeError: Cannot read properties of undefined (reading 'addEventListener')
> | [2022-08-06T04:59:03.614] [ERROR] shiny-server - TypeError: Cannot read 
> properties of undefined (reading 'addEventListener')
> |at WebSocketReceiver.setUp 
> (/usr/share/nodejs/sockjs/lib/trans-websocket.js:76:24)
> |at new GenericReceiver (/usr/share/nodejs/sockjs/lib/transport.js:313:12)
> |at new WebSocketReceiver 
> (/usr/share/nodejs/sockjs/lib/trans-websocket.js:63:9)
> |at ws.onopen (/usr/share/nodejs/sockjs/lib/trans-websocket.js:31:55)
> |at WebSocket.dispatchEvent 
> (/usr/share/nodejs/faye-websocket/lib/faye/websocket/api/event_target.js:24:30)
> |at WebSocket._open 
> (/usr/share/nodejs/faye-websocket/lib/faye/websocket/api.js:144:10)
> |at Hybi. 
> (/usr/share/nodejs/faye-websocket/lib/faye/websocket/api.js:35:49)
> |at Hybi.emit (node:events:513:28)
> |at Hybi._open 
> (/usr/share/nodejs/websocket-driver/lib/websocket/driver/base.js:148:10)
> |at Hybi.start 
> (/usr/share/nodejs/websocket-driver/lib/websocket/driver/base.js:105:34)
> | [2022-08-06T04:59:03.615] [INFO] shiny-server - Stopping listener on 
> http://[::]:3838
> | [2022-08-06T04:59:03.615] [INFO] shiny-server - Shutting down worker 
> processes (with notification)
> | /usr/lib/shiny-server/lib/main.js:391
> |  throw err;
> |  ^
> |
> | TypeError: Cannot read properties of undefined (reading 'addEventListener')
> |at WebSocketReceiver.setUp 
> (/usr/share/nodejs/sockjs/lib/trans-websocket.js:76:24)
> |at new GenericReceiver (/usr/share/nodejs/sockjs/lib/transport.js:313:12)
> |at new WebSocketReceiver 
> (/usr/share/nodejs/sockjs/lib/trans-websocket.js:63:9)
> |at ws.onopen (/usr/share/nodejs/sockjs/lib/trans-websocket.js:31:55)
> |at WebSocket.dispatchEvent 
> (/usr/share/nodejs/faye-websocket/lib/faye/websocket/api/event_target.js:24:30)
> |at WebSocket._open 
> (/usr/share/nodejs/faye-websocket/lib/faye/websocket/api.js:144:10)
> |at Hybi. 
> (/usr/share/nodejs/faye-websocket/lib/faye/websocket/api.js:35:49)
> |at Hybi.emit (node:events:513:28)
> |at Hybi._open 
> (/usr/share/nodejs/websocket-driver/lib/websocket/driver/base.js:148:10)
> |at Hybi.start 
> (/usr/share/nodejs/websocket-driver/lib/websocket/driver/base.js:105:34)
> |
> | Node.js v18.6.0
> 
> 
> While it is running perfectly ok _with 0.3.24-2_. Since this is
> not a new release, there is a regression with the new changelog revision.
> 
> In particular, it seems that something is off with the coffeescript
> generated files.
> 
> -- System Information:
> Debian Release: bookworm/sid
>   APT prefers testing
>   APT policy: (990, 'testing'), (500, 'unstable')
> Architecture: amd64 (x86_64)
> 
> Kernel: Linux 5.14.0-2-amd64 (SMP w/8 CPU threads)
> Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not 
> set
> Shell: /bin/sh linked to /usr/bin/dash
> Init: systemd (via /run/systemd/system)
> LSM: AppArmor: enabled
> 

-- 
Best,
Nilesh


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Description: PGP signature


Bug#1016681: marked as done (python-mitogen: Build-Depends on python2 which Debian tries to remove)

2022-08-06 Thread Debian Bug Tracking System
Your message dated Sat, 06 Aug 2022 12:22:05 +
with message-id 
and subject line Bug#1016681: fixed in python-mitogen 0.3.3-2
has caused the Debian Bug report #1016681,
regarding python-mitogen: Build-Depends on python2 which Debian tries to remove
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1016681: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016681
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-mitogen
Version: 0.3.3-1
Severity: serious

Hi all,

We're trying to remove python2 from bookworm, but your package still
Build-Depends on it. That looks like an oversight, but I might be
wrong. Please update your package.

Paul
--- End Message ---
--- Begin Message ---
Source: python-mitogen
Source-Version: 0.3.3-2
Done: Stefano Rivera 

We believe that the bug you reported is fixed in the latest version of
python-mitogen, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1016...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Stefano Rivera  (supplier of updated python-mitogen 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 06 Aug 2022 13:56:33 +0200
Source: python-mitogen
Architecture: source
Version: 0.3.3-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Team 
Changed-By: Stefano Rivera 
Closes: 1016681
Changes:
 python-mitogen (0.3.3-2) unstable; urgency=medium
 .
   * Drop Build-Depends on python2. (Closes: #1016681)
 - Patch: Stop the (trivial) testing against python2.7.
Checksums-Sha1:
 741dce70280ef6011b5ae527b34b0a8e7d2ed6a8 1769 python-mitogen_0.3.3-2.dsc
 3fff9d4b75c9373037a1c483463180cf78448050 9652 
python-mitogen_0.3.3-2.debian.tar.xz
 c2a94e03757cbba21fdebb0e8a6a2fb278520efc 5926 
python-mitogen_0.3.3-2_source.buildinfo
Checksums-Sha256:
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python-mitogen_0.3.3-2.debian.tar.xz
 bd4a32342246fd8473cb3e42547ee2318950005305e4226007c05ab2fedce5ed 5926 
python-mitogen_0.3.3-2_source.buildinfo
Files:
 12a9cb722f37de11771291f125f10e28 1769 python optional 
python-mitogen_0.3.3-2.dsc
 b8ed71714de6fb52a0887751cb809a1e 9652 python optional 
python-mitogen_0.3.3-2.debian.tar.xz
 b81fc344f5baba51f915b90054785b8f 5926 python optional 
python-mitogen_0.3.3-2_source.buildinfo

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Bug#1016732: node-sockjs throws: TypeError: Cannot read properties of undefined (reading 'addEventListener') at WebSocketReceiver.setUp

2022-08-06 Thread Nilesh Patra
Package: node-sockjs
Version: 0.3.24+~0.3.33-1
Severity: serious
X-Debbugs-Cc: e...@ericebrown.com

Hi,

On running shiny-server with 0.3.24+~0.3.33-1 it chokes with:

| [2022-08-06T04:59:03.613] [ERROR] shiny-server - Uncaught exception: 
TypeError: Cannot read properties of undefined (reading 'addEventListener')
| [2022-08-06T04:59:03.614] [ERROR] shiny-server - TypeError: Cannot read 
properties of undefined (reading 'addEventListener')
|at WebSocketReceiver.setUp 
(/usr/share/nodejs/sockjs/lib/trans-websocket.js:76:24)
|at new GenericReceiver (/usr/share/nodejs/sockjs/lib/transport.js:313:12)
|at new WebSocketReceiver 
(/usr/share/nodejs/sockjs/lib/trans-websocket.js:63:9)
|at ws.onopen (/usr/share/nodejs/sockjs/lib/trans-websocket.js:31:55)
|at WebSocket.dispatchEvent 
(/usr/share/nodejs/faye-websocket/lib/faye/websocket/api/event_target.js:24:30)
|at WebSocket._open 
(/usr/share/nodejs/faye-websocket/lib/faye/websocket/api.js:144:10)
|at Hybi. 
(/usr/share/nodejs/faye-websocket/lib/faye/websocket/api.js:35:49)
|at Hybi.emit (node:events:513:28)
|at Hybi._open 
(/usr/share/nodejs/websocket-driver/lib/websocket/driver/base.js:148:10)
|at Hybi.start 
(/usr/share/nodejs/websocket-driver/lib/websocket/driver/base.js:105:34)
| [2022-08-06T04:59:03.615] [INFO] shiny-server - Stopping listener on 
http://[::]:3838
| [2022-08-06T04:59:03.615] [INFO] shiny-server - Shutting down worker 
processes (with notification)
| /usr/lib/shiny-server/lib/main.js:391
|  throw err;
|  ^
|
| TypeError: Cannot read properties of undefined (reading 'addEventListener')
|at WebSocketReceiver.setUp 
(/usr/share/nodejs/sockjs/lib/trans-websocket.js:76:24)
|at new GenericReceiver (/usr/share/nodejs/sockjs/lib/transport.js:313:12)
|at new WebSocketReceiver 
(/usr/share/nodejs/sockjs/lib/trans-websocket.js:63:9)
|at ws.onopen (/usr/share/nodejs/sockjs/lib/trans-websocket.js:31:55)
|at WebSocket.dispatchEvent 
(/usr/share/nodejs/faye-websocket/lib/faye/websocket/api/event_target.js:24:30)
|at WebSocket._open 
(/usr/share/nodejs/faye-websocket/lib/faye/websocket/api.js:144:10)
|at Hybi. 
(/usr/share/nodejs/faye-websocket/lib/faye/websocket/api.js:35:49)
|at Hybi.emit (node:events:513:28)
|at Hybi._open 
(/usr/share/nodejs/websocket-driver/lib/websocket/driver/base.js:148:10)
|at Hybi.start 
(/usr/share/nodejs/websocket-driver/lib/websocket/driver/base.js:105:34)
|
| Node.js v18.6.0


While it is running perfectly ok _with 0.3.24-2_. Since this is
not a new release, there is a regression with the new changelog revision.

In particular, it seems that something is off with the coffeescript
generated files.

-- System Information:
Debian Release: bookworm/sid
  APT prefers testing
  APT policy: (990, 'testing'), (500, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 5.14.0-2-amd64 (SMP w/8 CPU threads)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages node-sockjs depends on:
pn  node-faye-websocket
ii  node-uuid  8.3.2+~8.3.3-2
pn  node-websocket-driver  

node-sockjs recommends no packages.

node-sockjs suggests no packages.



Bug#1009281: [Debichem-devel] Bug#1009281: Bug#1009281: Bug#1009281: Should cinfony be removed?

2022-08-06 Thread Andrius Merkys
Hi,

On 2022-07-24 21:18, Moritz Mühlenhoff wrote:
> Did you get any reply? Otherwise let's go ahead with the removal.

I have checked upstream's master branch and it indeed seems to contain
at least some porting to Python 3. I have opened a branch on Salsa
('python3') to attempt to package it. However, the port does not seem to
be complete, as I get syntax errors due to Python 2 syntax.

Best,
Andrius



Processed: Bug#1016681 marked as pending in python-mitogen

2022-08-06 Thread Debian Bug Tracking System
Processing control commands:

> tag -1 pending
Bug #1016681 [src:python-mitogen] python-mitogen: Build-Depends on python2 
which Debian tries to remove
Added tag(s) pending.

-- 
1016681: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1016681
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#1016681: marked as pending in python-mitogen

2022-08-06 Thread Stefano Rivera
Control: tag -1 pending

Hello,

Bug #1016681 in python-mitogen reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/python-team/packages/python-mitogen/-/commit/824e449a48cefb81ed3becdc392c51f66e27f9bd


Drop Build-Depends on python2. (Closes: #1016681)


(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/1016681



Processed: not found....

2022-08-06 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> # oops
> notfixed 1013531 1013531
Bug #1013531 {Done: Paul Gevers } [src:maim] maim: FTBFS: 
unsatisfiable build-dependencies: libslopy7.6, libslopy-dev
The source 'maim' and version '1013531' do not appear to match any binary 
packages
No longer marked as fixed in versions maim/1013531.
> notfound 1013531 5.7.4-2
Bug #1013531 {Done: Paul Gevers } [src:maim] maim: FTBFS: 
unsatisfiable build-dependencies: libslopy7.6, libslopy-dev
No longer marked as found in versions maim/5.7.4-2.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1013531: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1013531
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#1012895: marked as done (aptitude: ftbfs with GCC-12)

2022-08-06 Thread Debian Bug Tracking System
Your message dated Sat, 06 Aug 2022 11:48:53 +
with message-id 
and subject line Bug#1012895: fixed in aptitude 0.8.13-5
has caused the Debian Bug report #1012895,
regarding aptitude: ftbfs with GCC-12
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1012895: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1012895
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:aptitude
Version: 0.8.13-4
Severity: normal
Tags: sid bookworm
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-12

[This bug is targeted to the upcoming bookworm release]

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-12/g++-12, but succeeds to build with gcc-11/g++-11. The
severity of this report will be raised before the bookworm release.

The full build log can be found at:
http://qa-logs.debian.net/2022/06/09/gcc12/aptitude_0.8.13-4_unstable_gcc12.log
The last lines of the build log are at the end of this report.

To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-11/porting_to.html

GCC 11 defaults to the GNU++17 standard.  If your package installs
header files in /usr/include, please don't work around C++17 issues
by choosing a lower C++ standard for the package build, but fix these
issues to build with the C++17 standard.

[...]
/usr/include/cppunit/tools/StringHelper.h:25:9: note:   mismatched types ‘const 
_CharT*’ and ‘std::vector >’
   25 | ost << x;
  | ^~~~
/usr/include/c++/12/bits/ostream.tcc:302:5: note: candidate: ‘template std::basic_ostream<_Ch, _Tr>& 
std::operator<<(basic_ostream<_Ch, _Tr>&, const char*)’
  302 | operator<<(basic_ostream<_CharT, _Traits>& __out, const char* __s)
  | ^~~~
/usr/include/c++/12/bits/ostream.tcc:302:5: note:   template argument 
deduction/substitution failed:
/usr/include/cppunit/tools/StringHelper.h:25:9: note:   cannot convert ‘x’ 
(type ‘const std::vector >’) to type ‘const char*’
   25 | ost << x;
  | ^~~~
/usr/include/c++/12/ostream:615:5: note: candidate: ‘template 
std::basic_ostream& std::operator<<(basic_ostream&, const char*)’
  615 | operator<<(basic_ostream& __out, const char* __s)
  | ^~~~
/usr/include/c++/12/ostream:615:5: note:   template argument 
deduction/substitution failed:
/usr/include/cppunit/tools/StringHelper.h:25:9: note:   cannot convert ‘x’ 
(type ‘const std::vector >’) to type ‘const char*’
   25 | ost << x;
  | ^~~~
/usr/include/c++/12/ostream:628:5: note: candidate: ‘template 
std::basic_ostream& std::operator<<(basic_ostream&, const signed char*)’
  628 | operator<<(basic_ostream& __out, const signed char* 
__s)
  | ^~~~
/usr/include/c++/12/ostream:628:5: note:   template argument 
deduction/substitution failed:
/usr/include/cppunit/tools/StringHelper.h:25:9: note:   cannot convert ‘x’ 
(type ‘const std::vector >’) to type ‘const signed 
char*’
   25 | ost << x;
  | ^~~~
/usr/include/c++/12/ostream:633:5: note: candidate: ‘template 
std::basic_ostream& std::operator<<(basic_ostream&, const unsigned char*)’
  633 | operator<<(basic_ostream& __out, const unsigned 
char* __s)
  | ^~~~
/usr/include/c++/12/ostream:633:5: note:   template argument 
deduction/substitution failed:
/usr/include/cppunit/tools/StringHelper.h:25:9: note:   cannot convert ‘x’ 
(type ‘const std::vector >’) to type ‘const unsigned 
char*’
   25 | ost << x;
  | ^~~~
/usr/include/c++/12/ostream:754:5: note: candidate: ‘template _Ostream&& std::operator<<(_Ostream&&, const _Tp&)’
  754 | operator<<(_Ostream&& __os, const _Tp& __x)
  | ^~~~
/usr/include/c++/12/ostream:754:5: note:   template argument 
deduction/substitution failed:
/usr/include/c++/12/ostream: In substitution of ‘template _Ostream&& std::operator<<(_Ostream&&, const _Tp&) [with _Ostream = 
std::__cxx11::basic_ostringstream&; _Tp = std::vector >]’:
/usr/include/cppunit/tools/String

Bug#1006245: marked as done (libwebsockets: FTBFS with OpenSSL 3.0)

2022-08-06 Thread Debian Bug Tracking System
Your message dated Sat, 06 Aug 2022 11:50:00 +
with message-id 
and subject line Bug#1006245: fixed in libwebsockets 4.1.6-2
has caused the Debian Bug report #1006245,
regarding libwebsockets: FTBFS with OpenSSL 3.0
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1006245: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1006245
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: libwebsockets
Version: 4.0.20-2
Severity: important
Tags: bookworm sid
User: pkg-openssl-de...@lists.alioth.debian.org
Usertags: ftbfs-3.0

Your package is failing to build using OpenSSL 3.0 with the
following error:

| [ 31%] Building C object 
CMakeFiles/websockets.dir/lib/tls/openssl/openssl-server.c.o
| /usr/bin/cc  -I/<>/include -I/<>/plugins 
-I/<>/lib/core -I/<>/lib/core-net 
-I/<>/lib/event-libs -I/<>/include/abstract 
-I/<>/lib/tls -I/<>/lib/roles 
-I/<>/lib/event-libs/libuv -I/<>/lib/event-libs/poll 
-I/<>/lib/event-libs/libevent 
-I/<>/lib/event-libs/glib -I/<>/lib/event-libs/libev 
-I/<>/lib/jose/jwe -I/<>/lib/jose/jws 
-I/<>/lib/jose -I/<>/lib/misc 
-I/<>/lib/roles/http -I/<>/lib/roles/http/compression 
-I/<>/lib/roles/h1 -I/<>/lib/roles/h2 
-I/<>/lib/roles/ws -I/<>/lib/roles/cgi 
-I/<>/lib/roles/dbus -I/<>/lib/roles/raw-proxy 
-I/<>/lib/abstract -I/<>/lib/system/async-dns 
-I/<>/lib/roles/mqtt -I/<>/lib/plat/unix 
-I/<>/obj-x86_64-linux-gnu -I/<>/lib -Wall 
-Wsign-compare -Wstrict-aliasing -Wuninitialized -Werror -fvisibility=hidden 
-Wundef  -Wtype-limits -Wignored-qualifiers -g -O2 
-ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat 
-Werror=format-security -fno-strict-aliasing -Wno-error=format-truncation 
-Wno-error=format-overflow -Wdate-time -D_FORTIFY_SOURCE=2  -pthread -MD -MT 
CMakeFiles/websockets.dir/lib/tls/openssl/openssl-server.c.o -MF 
CMakeFiles/websockets.dir/lib/tls/openssl/openssl-server.c.o.d -o 
CMakeFiles/websockets.dir/lib/tls/openssl/openssl-server.c.o -c 
/<>/lib/tls/openssl/openssl-server.c
| /<>/lib/tls/openssl/openssl-server.c: In function 
‘lws_tls_server_certs_load’:
| /<>/lib/tls/openssl/openssl-server.c:403:9: error: 
‘EC_KEY_new_by_curve_name’ is deprecated: Since OpenSSL 3.0 
[-Werror=deprecated-declarations]
|   403 | ecdh = EC_KEY_new_by_curve_name(ecdh_nid);
|   | ^~~~
| In file included from /usr/include/openssl/x509.h:33,
|  from /usr/include/openssl/ssl.h:31,
|  from /<>/include/libwebsockets.h:250,
|  from /<>/lib/core/private-lib-core.h:135,
|  from /<>/lib/tls/openssl/openssl-server.c:25:
| /usr/include/openssl/ec.h:996:31: note: declared here
|   996 | OSSL_DEPRECATEDIN_3_0 EC_KEY *EC_KEY_new_by_curve_name(int nid);
|   |   ^~~~
| /<>/lib/tls/openssl/openssl-server.c:409:9: error: 
‘EC_KEY_free’ is deprecated: Since OpenSSL 3.0 
[-Werror=deprecated-declarations]
|   409 | EC_KEY_free(ecdh);
|   | ^~~
| In file included from /usr/include/openssl/x509.h:33,
|  from /usr/include/openssl/ssl.h:31,
|  from /<>/include/libwebsockets.h:250,
|  from /<>/lib/core/private-lib-core.h:135,
|  from /<>/lib/tls/openssl/openssl-server.c:25:
| /usr/include/openssl/ec.h:1001:28: note: declared here
|  1001 | OSSL_DEPRECATEDIN_3_0 void EC_KEY_free(EC_KEY *key);
|   |^~~
| /<>/lib/tls/openssl/openssl-server.c:451:9: error: 
‘EVP_PKEY_get1_EC_KEY’ is deprecated: Since OpenSSL 3.0 
[-Werror=deprecated-declarations]
|   451 | EC_key = EVP_PKEY_get1_EC_KEY(pkey);
|   | ^~
| In file included from /usr/include/openssl/x509.h:29,
|  from /usr/include/openssl/ssl.h:31,
|  from /<>/include/libwebsockets.h:250,
|  from /<>/lib/core/private-lib-core.h:135,
|  from /<>/lib/tls/openssl/openssl-server.c:25:
| /usr/include/openssl/evp.h:1374:19: note: declared here
|  1374 | struct ec_key_st *EVP_PKEY_get1_EC_KEY(EVP_PKEY *pkey);
|   |   ^~~~
| /<>/lib/tls/openssl/openssl-server.c:459:9: error: 
‘EC_KEY_free’ is deprecated: Since OpenSSL 3.0 
[-Werror=deprecated-declarations]
|   459 | EC_KEY_free(EC_key);
|   | ^~~
| In file included from /usr/include/openssl/x509.h:33,
|  from /usr/include/openssl/ssl.h:31,
|  from /<>/include/libwebsockets.h:250,
|  from /<>/lib/core/private-lib-core.h:135,

Processed: tagging 1012895

2022-08-06 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> tags 1012895 + pending
Bug #1012895 [src:aptitude] aptitude: ftbfs with GCC-12
Added tag(s) pending.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1012895: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1012895
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Processed: nfft breaks pynfft autopkgtest on i386: Segmentation fault

2022-08-06 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> reassign 1013940 src:nfft 3.3.2-2.1
Bug #1013940 {Done: Andreas Tille } [src:nfft, src:pynfft] 
nfft breaks pynfft autopkgtest on i386: Segmentation fault
Bug reassigned from package 'src:nfft, src:pynfft' to 'src:nfft'.
No longer marked as found in versions pynfft/1.3.2-5 and nfft/3.3.2-2.1.
Ignoring request to alter fixed versions of bug #1013940 to the same values 
previously set
Bug #1013940 {Done: Andreas Tille } [src:nfft] nfft breaks 
pynfft autopkgtest on i386: Segmentation fault
Marked as found in versions nfft/3.3.2-2.1.
> fixed 1013940 3.5.3-1
Bug #1013940 {Done: Andreas Tille } [src:nfft] nfft breaks 
pynfft autopkgtest on i386: Segmentation fault
Marked as fixed in versions nfft/3.5.3-1.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1013940: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1013940
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#1016454: megadepth: autopkgtest failure on s390x: segmentation fault

2022-08-06 Thread Nilesh Patra
Hi Bilal,

You added in autopkgtests for this one -- could you please take a look?

On Sun, 31 Jul 2022 22:06:50 +0200 Paul Gevers  wrote:
> Source: megadepth
> Version: 1.2.0-3
> Severity: serious
> User: debian...@lists.debian.org
> Usertags: fails-always
> 
> Dear maintainer(s),
> 
> You recently added an autopkgtest to your package megadepth, great. 
> However, it fails on s390x. Currently this failure is blocking the 
> migration to testing [1]. Can you please investigate the situation and 
> fix it?
> 
> I copied some of the output at the bottom of this report.
> 
> More information about this bug and the reason for filing it can be found on
> https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
> 
> Paul
> 
> [1] https://qa.debian.org/excuses.php?package=megadepth
> 
> https://ci.debian.net/data/autopkgtest/testing/s390x/m/megadepth/23583699/log.gz
> 
> Running Tests
> Test 1
> building whole annotation region map done
> 2 chromosomes for annotated regions read
> 0 chromosomes for annotated regions read, collapsed
> total number of annotations in collapsed: 0
> Processing BAM: "tests/test_noprefix.bam"
> /tmp/autopkgtest-lxc.gmfzuwos/downtmp/build.jJn/src/debian/tests/run-unit-test:
>  
> line 33:  1590 Segmentation fault  megadepth tests/test_noprefix.bam 
> --prefix test.bam --threads 4 --bigwig --auc --min-unique-qual 10 
> --annotation tests/test_exons.bed --frag-dist --alts --include-softclip 
> --only-polya --read-ends --test-polya --no-annotation-stdout 
> --no-auc-stdout --filter-out 260 --add-chr-prefix human
> autopkgtest [04:42:40]: test run-unit-test
> 

-- 
Best,
Nilesh


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Processed: Re: maim: FTBFS: unsatisfiable build-dependencies: libslopy7.6, libslopy-dev

2022-08-06 Thread Debian Bug Tracking System
Processing control commands:

> notfound -1 1013531
Bug #1013531 [src:maim] maim: FTBFS: unsatisfiable build-dependencies: 
libslopy7.6, libslopy-dev
The source 'maim' and version '1013531' do not appear to match any binary 
packages
Ignoring request to alter found versions of bug #1013531 to the same values 
previously set
> close -1 1013531
Bug #1013531 [src:maim] maim: FTBFS: unsatisfiable build-dependencies: 
libslopy7.6, libslopy-dev
The source 'maim' and version '1013531' do not appear to match any binary 
packages
Marked as fixed in versions maim/1013531.
Bug #1013531 [src:maim] maim: FTBFS: unsatisfiable build-dependencies: 
libslopy7.6, libslopy-dev
Marked Bug as done

-- 
1013531: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1013531
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#1013531: maim: FTBFS: unsatisfiable build-dependencies: libslopy7.6, libslopy-dev

2022-08-06 Thread Paul Gevers

Control: notfound -1 1013531
Control: close -1 1013531

Dear Antoine, all,

You marked this bug as fixed with the same version as it was reported 
against. This "confuses" the BTS in the sense that it doesn't consider 
the bug to be fixed. Hence, I removed the "found" version to improve the 
situation.


Your last upload included the amd64 binary. I have triggered a binNMU to 
get it build on a buildd because otherwise the package wasn't migrating 
(already for 60 days).


Assuming that with the fixes above, the package can finally migrate.

One thing I spotted while investigating the situation. maim now 
hard-codes the Build-Depends and Depends on libslopy7.6 which means that 
during slop transitions maim needs a source full upload. libslop-dev 
should always depend on the correct named library already, so it 
shouldn't be needed as a Build-Depends and unless this are implemented 
wrong, ${shlibs:Depends} should also generate the right Depends. If you 
drop both, the package only needs a no-change rebuild (binNMU) during 
transitions, making the transition much easier to manage from the 
Release Team side.


Paul


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