Bug#655788: [Debian-med-packaging] Bug#655788: Bug#655788: igstk: FTBFS: libITKIO.so: undefined reference to `gdcm::PixmapToPixmapFilter::SetInput(gdcm::Pixmap const)'
On Sun, Jan 22, 2012 at 1:40 AM, Steve M. Robbins st...@sumost.ca wrote:
On Sat, Jan 21, 2012 at 11:12:45PM -0500, Dominique Belhachemi wrote:
Hi Steve,
It occurred in a clean pbuilder environment on amd64 and the build
used the latest itk package:
Setting up libvxl1.14 (1.14.0-14) ...
Setting up libinsighttoolkit3.20 (3.20.1-2) ...
OK, I'm preparing ITK 3.20.1-3 which adds dependency from
libinsighttoolkit3-dev to libvxl1-dev. This fixes the
immediate problem ...
CMake Warning at /usr/lib/InsightToolkit/UseITK.cmake:53 (FIND_PACKAGE):
Could not find module FindVXL.cmake or a configuration file for package
VXL.
... because FindVXL.cmake is part of libvxl1-dev.
Unfortunately, it exposes a different problem. The build now requires
file /usr/share/vxl/cmake/doxy_header.html which I cannot find.
The missing file is located in the vxl source package
./vxl-1.14.0/config/cmake/doxygen/doxy_header.html
but it is not part of the vxl binary packages.
igstk compiles fine after applying the following patch to vxl.
--- vxl-1.14.0.orig/config/cmake/Modules/UseVXL.cmake
+++ vxl-1.14.0/config/cmake/Modules/UseVXL.cmake
@@ -132,7 +132,7 @@ IF(VXL_CONFIG_CMAKE)
ENDIF(VXL_PROVIDE_OLD_CACHE_NAMES)
# Allow use of VXL's cmake/doxygen framework
- INCLUDE(${VXL_CMAKE_DOXYGEN_DIR}/doxygen.cmake)
+# INCLUDE(${VXL_CMAKE_DOXYGEN_DIR}/doxygen.cmake)
IF(VXL_PROVIDE_STANDARD_OPTIONS)
# Provide the standard set of VXL CMake options to the project.
--
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Bug#655788: [Debian-med-packaging] Bug#655788: Bug#655788: igstk: FTBFS: libITKIO.so: undefined reference to `gdcm::PixmapToPixmapFilter::SetInput(gdcm::Pixmap const)'
On Sat, Jan 21, 2012 at 11:12:45PM -0500, Dominique Belhachemi wrote: Hi Steve, It occurred in a clean pbuilder environment on amd64 and the build used the latest itk package: Setting up libvxl1.14 (1.14.0-14) ... Setting up libinsighttoolkit3.20 (3.20.1-2) ... OK, I'm preparing ITK 3.20.1-3 which adds dependency from libinsighttoolkit3-dev to libvxl1-dev. This fixes the immediate problem ... CMake Warning at /usr/lib/InsightToolkit/UseITK.cmake:53 (FIND_PACKAGE): Could not find module FindVXL.cmake or a configuration file for package VXL. ... because FindVXL.cmake is part of libvxl1-dev. Unfortunately, it exposes a different problem. The build now requires file /usr/share/vxl/cmake/doxy_header.html which I cannot find. Build log (amd64): dpkg-source -b igstk-4.4.0 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: patches are not applied, applying them now dpkg-source: info: applying 12_doxygen.diff dpkg-source: info: applying 34_disable_resource_intensely_tests.diff dpkg-source: info: applying 90_examples.diff dpkg-source: info: applying gcc-4.5.diff dpkg-source: info: applying 50_kfreebsd.diff dpkg-source: info: building igstk using existing ./igstk_4.4.0.orig.tar.gz dpkg-source: info: building igstk in igstk_4.4.0-1.debian.tar.gz dpkg-source: info: building igstk in igstk_4.4.0-1.dsc debian/rules build test -x debian/rules mkdir -p obj-x86_64-linux-gnu /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_STRIP_ARGS is a deprecated variable /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/home/steve/Packages/debian-med/trunk/packages/igstk/build-area/igstk-4.4.0' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/home/steve/Packages/debian-med/trunk/packages/igstk/build-area/igstk-4.4.0' cd . QUILT_PATCHES=/home/steve/Packages/debian-med/trunk/packages/igstk/build-area/igstk-4.4.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 File series fully applied, ends at patch 50_kfreebsd.diff touch debian/stamp-patched /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/home/steve/Packages/debian-med/trunk/packages/igstk/build-area/igstk-4.4.0' make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/home/steve/Packages/debian-med/trunk/packages/igstk/build-area/igstk-4.4.0' cd obj-x86_64-linux-gnu cmake /home/steve/Packages/debian-med/trunk/packages/igstk/build-area/igstk-4.4.0/. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_C_COMPILER:FILEPATH=cc -DCMAKE_CXX_COMPILER:FILEPATH=g++ -DCMAKE_C_FLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DCMAKE_CXX_FLAGS=-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DCMAKE_SKIP_RPATH=ON -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_CXX_FLAGS=-Wno-deprecated -DCMAKE_VERBOSE_MAKEFILE=0 -DCMAKE_SHARED_LINKER_FLAGS=-Wl,--as-needed -DCMAKE_EXE_LINKER_FLAGS=-Wl,--as-needed -DCMAKE_SKIP_RPATH:BOOL=ON -DIGSTK_WITH_LIBRARY_VERSION:BOOL=ON -DIGSTK_DEVELOPMENT_VERSION:BOOL=ON -DIGSTK_BUILD_EXAMPLES:BOOL=OFF -DIGSTK_BUILD_TESTING:BOOL=ON -DCMAKE_BUILD_TYPE:STRING=Release -DIGSTK_USE_Qt:BOOL=ON -DIGSTK_USE_FLTK:BOOL=ON -DIGSTK_USE_OpenIGTLink:BOOL=ON -DIGSTK_USE_OpenCV:BOOL=OFF -DIGSTK_USE_MicronTracker:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=ON -DQT_MOC_EXECUTABLE:PATH=/usr/bin/moc-qt4 -DQT_UIC_EXECUTABLE:PATH=/usr/bin/uic-qt4 -DQT_QMAKE_EXECUTABLE:PATH=/usr/bin/qmake -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done CMake Warning (dev) at /usr/lib/InsightToolkit/ITKConfig.cmake:50 (IF): given arguments: ON An argument named ON appears in a conditional statement. Policy CMP0012 is not set: if() recognizes numbers and boolean constants. Run cmake --help-policy CMP0012 for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/share/cmake-2.8/Modules/FindITK.cmake:48 (FIND_PACKAGE) CMakeLists.txt:47 (FIND_PACKAGE) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Doxygen: /usr/bin/doxygen -- Found Perl: /usr/bin/perl CMake Error: File /usr/share/vxl/cmake/doxy_header.html does not exist. CMake Error at /usr/share/vxl/cmake/doxygen.cmake:203 (configure_file): configure_file Problem configuring file Call Stack (most recent call first): /usr/share/vxl/cmake/UseVXL.cmake:135 (INCLUDE)
