I am facing the exact same problem during ppc64el bootstrap, as shown:
Makefile:9: config.mk: No such file or directory
Makefile:10: /subdir.mk: No such file or directory
make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: *** No rule to make target `/subdir.mk'. Stop.
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_auto_clean: make -j1 distclean returned exit code 2
make: *** [clean] Error 2
dpkg-buildpackage: error: fakeroot debian/rules clean gave error exit
status 2
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