Processed: Re: Bug#768675: mdp: FTBFS in jessie: tests failures

2014-11-28 Thread Debian Bug Tracking System 
Processing control commands:

 tag -1 + pending
Bug #768675 [src:mdp] mdp: FTBFS in jessie: tests failures
Added tag(s) pending.

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768675: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=768675
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Bug#768675: mdp: FTBFS in jessie: tests failures

2014-11-28 Thread gregor herrmann 
Control: tag -1 + pending

On Wed, 12 Nov 2014 20:18:13 +0100, Tiziano Zito wrote:

 thank you for diagnosing the problem. A fix is actually already
 available upstream since August 2013 (!). An updated mdp package for
 jessy is ready and will be uploaded as soon as the Uploader finds
 the time to do it :)

Let's hope this is soon for some low value of soon :)

Tagging pending in the meantime.


Cheers,
gregor

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Bug#768675: mdp: FTBFS in jessie: tests failures

2014-11-28 Thread Yaroslav Halchenko 

On Wed, 12 Nov 2014, Tiziano Zito wrote:

 Hi Andrey!

 On Wed 12 Nov, 23:05, Andrey Rahmatullin w...@debian.org wrote:
  The failing docstring indeed contains U+2013 EN DASH, it is taken from
  /usr/lib/python2.7/dist-packages/sklearn/feature_extraction/text.py
  (package python-sklearn). In jessie (0.14.1-3) it says Transform a count
  matrix to a normalized tf or tf–idf representation when in sid (0.15.2-3)
  it contains a normal ASCII hyphen instead, so this FTBFS is jessie-only.
  The solution is probably to fix bimdp/nodes/autogen.py in mdp to support
  non-ASCII docstrings.

 thank you for diagnosing the problem. A fix is actually already
 available upstream since August 2013 (!). An updated mdp package for
 jessy is ready and will be uploaded as soon as the Uploader finds
 the time to do it :)

ah, right -- imho there seems to be a bit too many changes picked into
the package but let's see what release team would say.  I will
build/upload -2 to sid shortly.  For experimental/NeuroDebian we better
package 3.4 or 3.3.1 so that package would upgrade from
3.3+git6-g7bbd889-1

-- 
Yaroslav O. Halchenko, Ph.D.
http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org
Research Scientist,Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834   Fax: +1 (603) 646-1419
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Bug#768675: mdp: FTBFS in jessie: tests failures

2014-11-28 Thread Yaroslav Halchenko 
Ok, uploaded Tiziano

it will be up to you to file an unblock request

reportbug release.debian.org

and provide debdiff (from 3.3-1) arguing the necessity of all the
changes ;-)

Cheers!

-- 
Yaroslav O. Halchenko, Ph.D.
http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org
Research Scientist,Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834   Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik


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Bug#768675: mdp: FTBFS in jessie: tests failures

2014-11-12 Thread Andrey Rahmatullin 
On Sun, Nov 09, 2014 at 08:33:36AM +0100, Lucas Nussbaum wrote:
  + _py_=2.7
  + python2.7 -c from distutils import sysconfig; 
  print(sysconfig.get_python_lib())
  + LOC=/«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages
  + python2.7 
  /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/mdp/test/run_tests.py
   --seed 1029384756 
  /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/mdp 
  /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp
  /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/mdp/test/run_tests.py/_pytest.assertion.oldinterpret:3:
   DeprecationWarning: The compiler package is deprecated and removed in 
  Python 3.x.
  = test session starts 
  ==
  platform linux2 -- Python 2.7.8 -- pytest-2.1.2
python: 2.7.8.final.0
   mdp: 3.3
   parallel python: 1.6.4
shogun: NOT AVAILABLE: No module named shogun
libsvm: libsvm.so.3
joblib: 0.8.3
   sklearn: 0.14.1
  numx: scipy 0.14.0
symeig: scipy.linalg.eigh
  Random Seed: 1029384756
  
  collecting ... collected 0 items / 1 errors
  
   ERRORS 
  
  __ ERROR collecting . 
  __
  _pytest.runner:99: in __init__
 ???
  _pytest.main:290: in _memocollect
 ???
  _pytest.main:214: in _memoizedcall
 ???
  _pytest.main:290: in lambda
 ???
  _pytest.main:429: in collect
 ???
  _pytest.main:445: in _collect
 ???
  py._path.common:312: in visit
 ???
  py._path.common:348: in gen
 ???
  _pytest.main:468: in _recurse
 ???
  _pytest.main:126: in call_matching_hooks
 ???
  _pytest.config:281: in _getmatchingplugins
 ???
  _pytest.config:183: in getconftestmodules
 ???
  _pytest.config:212: in importconftest
 ???
  py._path.local:518: in pyimport
 ???
  debian/tmp/usr/lib/python2.7/dist-packages/bimdp/__init__.py:91: in module
 from inspection import *
  debian/tmp/usr/lib/python2.7/dist-packages/bimdp/inspection/__init__.py:5: 
  in module
 from tracer import (
  debian/tmp/usr/lib/python2.7/dist-packages/bimdp/inspection/tracer.py:32: 
  in module
 from bimdp.hinet import BiFlowNode, CloneBiLayer
  debian/tmp/usr/lib/python2.7/dist-packages/bimdp/hinet/__init__.py:5: in 
  module
 from bihtmlvisitor import BiHiNetHTMLVisitor, show_biflow
  debian/tmp/usr/lib/python2.7/dist-packages/bimdp/hinet/bihtmlvisitor.py:12: 
  in module
 from bimdp.nodes import SenderBiNode
  debian/tmp/usr/lib/python2.7/dist-packages/bimdp/nodes/__init__.py:3: in 
  module
 exec binodes_code()
  debian/tmp/usr/lib/python2.7/dist-packages/bimdp/nodes/autogen.py:111: in 
  binodes_code
 _binode_module(fid, nodes)
  debian/tmp/usr/lib/python2.7/dist-packages/bimdp/nodes/autogen.py:102: in 
  _binode_module
  old_classname=old_classname)
  debian/tmp/usr/lib/python2.7/dist-packages/bimdp/nodes/autogen.py:70: in 
  _binode_code
 fid.write('\n%s' % docstring)
  E   UnicodeEncodeError: 'ascii' codec can't encode character 
  u'\u2013' in position 62: ordinal not in range(128)
  = NOTE 
  =
python: 2.7.8.final.0
   mdp: 3.3
   parallel python: 1.6.4
shogun: NOT AVAILABLE: No module named shogun
libsvm: libsvm.so.3
joblib: 0.8.3
   sklearn: 0.14.1
  numx: scipy 0.14.0
symeig: scipy.linalg.eigh
  Random Seed: 1029384756
  
  IMPORTANT: some tests use random numbers. This could
  occasionally lead to failures due to numerical degeneracies.
  To rule this out, please run the tests more than once.
  If you get reproducible failures please report a bug!
  
  === 1 error in 0.16 seconds 
  
  make[1]: *** [override_dh_auto_install] Error 1
The failing docstring indeed contains U+2013 EN DASH, it is taken from
/usr/lib/python2.7/dist-packages/sklearn/feature_extraction/text.py
(package python-sklearn). In jessie (0.14.1-3) it says Transform a count
matrix to a normalized tf or tf–idf representation when in sid (0.15.2-3)
it contains a normal ASCII hyphen instead, so this FTBFS is jessie-only.
The solution is probably to fix bimdp/nodes/autogen.py in mdp to support
non-ASCII docstrings.

-- 
WBR, wRAR


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Bug#768675: mdp: FTBFS in jessie: tests failures

2014-11-12 Thread Tiziano Zito 
Hi Andrey!

On Wed 12 Nov, 23:05, Andrey Rahmatullin w...@debian.org wrote:
 The failing docstring indeed contains U+2013 EN DASH, it is taken from
 /usr/lib/python2.7/dist-packages/sklearn/feature_extraction/text.py
 (package python-sklearn). In jessie (0.14.1-3) it says Transform a count
 matrix to a normalized tf or tf–idf representation when in sid (0.15.2-3)
 it contains a normal ASCII hyphen instead, so this FTBFS is jessie-only.
 The solution is probably to fix bimdp/nodes/autogen.py in mdp to support
 non-ASCII docstrings.

thank you for diagnosing the problem. A fix is actually already
available upstream since August 2013 (!). An updated mdp package for
jessy is ready and will be uploaded as soon as the Uploader finds
the time to do it :)

Thanks,
Tiziano


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Bug#768675: mdp: FTBFS in jessie: tests failures

2014-11-08 Thread Lucas Nussbaum 
Source: mdp
Version: 3.3-1
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20141108 qa-ftbfs
Justification: FTBFS in jessie on amd64

Hi,

During a rebuild of all packages in jessie (in a jessie chroot, not a
sid chroot), your package failed to build on amd64.

Relevant part (hopefully):
 make[1]: Entering directory '/«PKGBUILDDIR»'
 dh_auto_install --destdir=/«PKGBUILDDIR»/debian/tmp
 running install
 running build
 running build_py
 running install_lib
 creating /«PKGBUILDDIR»/debian/tmp
 creating /«PKGBUILDDIR»/debian/tmp/usr
 creating /«PKGBUILDDIR»/debian/tmp/usr/lib
 creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7
 creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages
 creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp
 creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/test
 copying build/lib.linux-x86_64-2.7/bimdp/test/__init__.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/test
 copying build/lib.linux-x86_64-2.7/bimdp/test/_tools.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/test
 copying build/lib.linux-x86_64-2.7/bimdp/test/conftest.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/test
 copying build/lib.linux-x86_64-2.7/bimdp/test/ide_run.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/test
 copying build/lib.linux-x86_64-2.7/bimdp/test/test_biflow.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/test
 copying build/lib.linux-x86_64-2.7/bimdp/test/test_bihinet.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/test
 copying build/lib.linux-x86_64-2.7/bimdp/test/test_binode.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/test
 copying build/lib.linux-x86_64-2.7/bimdp/test/test_gradient.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/test
 copying build/lib.linux-x86_64-2.7/bimdp/test/test_namespace_fixups.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/test
 copying build/lib.linux-x86_64-2.7/bimdp/test/test_parallelbiflow.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/test
 copying build/lib.linux-x86_64-2.7/bimdp/test/test_parallelbihinet.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/test
 creating 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/parallel
 copying build/lib.linux-x86_64-2.7/bimdp/parallel/__init__.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/parallel
 copying build/lib.linux-x86_64-2.7/bimdp/parallel/parallelbiflow.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/parallel
 copying build/lib.linux-x86_64-2.7/bimdp/parallel/parallelbihinet.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/parallel
 creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/nodes
 copying build/lib.linux-x86_64-2.7/bimdp/nodes/__init__.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/nodes
 copying build/lib.linux-x86_64-2.7/bimdp/nodes/autogen.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/nodes
 copying build/lib.linux-x86_64-2.7/bimdp/nodes/gradient.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/nodes
 copying build/lib.linux-x86_64-2.7/bimdp/nodes/miscnodes.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/nodes
 creating 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/inspection
 copying build/lib.linux-x86_64-2.7/bimdp/inspection/__init__.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/inspection
 copying build/lib.linux-x86_64-2.7/bimdp/inspection/facade.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/inspection
 copying build/lib.linux-x86_64-2.7/bimdp/inspection/slideshow.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/inspection
 copying build/lib.linux-x86_64-2.7/bimdp/inspection/tracer.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/inspection
 copying build/lib.linux-x86_64-2.7/bimdp/inspection/utils.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/inspection
 creating /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/hinet
 copying build/lib.linux-x86_64-2.7/bimdp/hinet/__init__.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/hinet
 copying build/lib.linux-x86_64-2.7/bimdp/hinet/biflownode.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/hinet
 copying build/lib.linux-x86_64-2.7/bimdp/hinet/bihtmlvisitor.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/hinet
 copying build/lib.linux-x86_64-2.7/bimdp/hinet/bilayer.py - 
 /«PKGBUILDDIR»/debian/tmp/usr/lib/python2.7/dist-packages/bimdp/hinet
 copying