Bug#808401: Bug#808401: plastimatch: FTBFS: itkGDCMSeriesFileNames.h:25:29: fatal error: gdcmSerieHelper.h: No such file or directory
On Sat, Jan 16, 2016 at 06:41:26PM +0100, Gert Wollny wrote: > > >dcut dm --uid "Gert Wollny" --allow plastimatch > > > > well, I wouldn't give out DM powers to somebody I've never heard > > about before :) (and for sure using name/surname as a uid...) > > sorry. > No worries, that was more like a copy-paste hint to Andreas, and as for > using name/surname as a uid, that's actually the way it is written in > the DM wiki. Dcut would refuse if it does not find a matching key ID. :-) So I took these few seconds to enable Gert uploading since I fully trust him. Kind regards Andreas. -- http://fam-tille.de
Bug#808401: Bug#808401: plastimatch: FTBFS: itkGDCMSeriesFileNames.h:25:29: fatal error: gdcmSerieHelper.h: No such file or directory
> https://buildd.debian.org/status/package.php?p=plastimatch > > this was done today (I didn't notice it). > So, amd64 and i386 succeeded, but all the other failed. > nice. no ^^ > > Do you know something about this too? Well, I'm not sure what are the problems there in the actual build, it seems there ITK would have to be rebuild against gdcm-2.6, but on these archs insighttoolkit4 is not available, and since insighttoolkit3 will be phased out soon, I'm not sure whether we should bother requesting a rebuild of the latter. Eventually, we will have to drop all archs except i386 and amd64 for packaged that depend on ITK before stretch goes into freeze. > >dcut dm --uid "Gert Wollny" --allow plastimatch > > well, I wouldn't give out DM powers to somebody I've never heard > about before :) (and for sure using name/surname as a uid...) > sorry. No worries, that was more like a copy-paste hint to Andreas, and as for using name/surname as a uid, that's actually the way it is written in the DM wiki. Best, Gert
Bug#808401: Bug#808401: plastimatch: FTBFS: itkGDCMSeriesFileNames.h:25:29: fatal error: gdcmSerieHelper.h: No such file or directory
On Sat, Jan 16, 2016 at 06:14:51PM +0100, Gert Wollny wrote: > Well, there was bug #808491 (now resolved) in ITK+GDCM that made > builds against ITK fail, that's why I set it as blocker. ah, ok. > Andreas Beckmann already requested a NMU (i.e. re-opend the NMU bug > #808401 I had filed a few days ago) and a rebuild is all that is > needed. > > If the release team closes #808491 for other reasons than a successful > rebuild I can take care of it, but someone first has to do https://buildd.debian.org/status/package.php?p=plastimatch this was done today (I didn't notice it). So, amd64 and i386 succeeded, but all the other failed. nice. no ^^ Do you know something about this too? >dcut dm --uid "Gert Wollny" --allow plastimatch well, I wouldn't give out DM powers to somebody I've never heard about before :) (and for sure using name/surname as a uid...) sorry. -- regards, Mattia Rizzolo GPG Key: 66AE 2B4A FCCF 3F52 DA18 4D18 4B04 3FCD B944 4540 .''`. more about me: http://mapreri.org : :' : Launchpad user: https://launchpad.net/~mapreri `. `'` Debian QA page: https://qa.debian.org/developer.php?login=mattia `- signature.asc Description: PGP signature
Bug#808401: Bug#808401: plastimatch: FTBFS: itkGDCMSeriesFileNames.h:25:29: fatal error: gdcmSerieHelper.h: No such file or directory
> Gert seemed to know what was up with this, and TBH I don't really > understand what he wrote... Well, there was bug #808491 (now resolved) in ITK+GDCM that made builds against ITK fail, that's why I set it as blocker. Andreas Beckmann already requested a NMU (i.e. re-opend the NMU bug #808401 I had filed a few days ago) and a rebuild is all that is needed. If the release team closes #808491 for other reasons than a successful rebuild I can take care of it, but someone first has to do dcut dm --uid "Gert Wollny" --allow plastimatch Best, Gert
Bug#808401: Bug#808401: plastimatch: FTBFS: itkGDCMSeriesFileNames.h:25:29: fatal error: gdcmSerieHelper.h: No such file or directory
On Sat, Jan 16, 2016 at 05:25:18PM +0100, Andreas Tille wrote: > On Sat, Jan 16, 2016 at 02:00:27AM +, Mattia Rizzolo wrote: > > That bug has now been fixed, can this proceed, then? > I'm AFK for the next 12+x hours - feel free to do a team upload. well, I haven't investigated this at all, and I'm not sure I'll have time in the next 12 hours to take care of this too. Gert seemed to know what was up with this, and TBH I don't really understand what he wrote... > Thanks also for fixing vxl. That's very appreciated. vxl was otherwise quite straightforward (just took a huge amount of time to test build...) :) -- regards, Mattia Rizzolo GPG Key: 66AE 2B4A FCCF 3F52 DA18 4D18 4B04 3FCD B944 4540 .''`. more about me: http://mapreri.org : :' : Launchpad user: https://launchpad.net/~mapreri `. `'` Debian QA page: https://qa.debian.org/developer.php?login=mattia `- signature.asc Description: PGP signature
Bug#808401: Bug#808401: plastimatch: FTBFS: itkGDCMSeriesFileNames.h:25:29: fatal error: gdcmSerieHelper.h: No such file or directory
On Sat, Jan 16, 2016 at 02:00:27AM +, Mattia Rizzolo wrote: > > > > Well, it turns out that Emilio from the release team already tried to > > build ITK against the new gdcm. > > > > Which means this bug is now blocked by #808491, which is something for > > which I need help from upstream ITK and/or GDCM. > > That bug has now been fixed, can this proceed, then? I'm AFK for the next 12+x hours - feel free to do a team upload. Thanks also for fixing vxl. That's very appreciated. Feel also free to fix the Vcs-* fields as you suggested. Thanks a lot for your QA work Andreas. -- http://fam-tille.de
Bug#808401: Bug#808401: plastimatch: FTBFS: itkGDCMSeriesFileNames.h:25:29: fatal error: gdcmSerieHelper.h: No such file or directory
On Sun, Dec 20, 2015 at 03:19:16PM +0100, Gert Wollny wrote: > On Sat, 2015-12-19 at 22:55 +0100, Andreas Tille wrote: > > Hi Gert, > > > > On Sat, Dec 19, 2015 at 09:32:58PM +0100, Gert Wollny wrote: > > > It seems that there is a conflict in which gdcm version is used. > > > The log says that gdcm-2.6 was found but later the include files > > > for gdcm-2.4 are used. > > > > > > I guess itk needs to be rebuild against gdcm-2.6 since it seems to > > > pull in the old version. > > > > Sounds sensible. Do you need any help for this? > > Well, it turns out that Emilio from the release team already tried to > build ITK against the new gdcm. > > Which means this bug is now blocked by #808491, which is something for > which I need help from upstream ITK and/or GDCM. That bug has now been fixed, can this proceed, then? -- regards, Mattia Rizzolo GPG Key: 66AE 2B4A FCCF 3F52 DA18 4D18 4B04 3FCD B944 4540 .''`. more about me: http://mapreri.org : :' : Launchpad user: https://launchpad.net/~mapreri `. `'` Debian QA page: https://qa.debian.org/developer.php?login=mattia `- signature.asc Description: PGP signature
Bug#808401: Bug#808401: plastimatch: FTBFS: itkGDCMSeriesFileNames.h:25:29: fatal error: gdcmSerieHelper.h: No such file or directory
On Sat, 2015-12-19 at 22:55 +0100, Andreas Tille wrote: > Hi Gert, > > On Sat, Dec 19, 2015 at 09:32:58PM +0100, Gert Wollny wrote: > > It seems that there is a conflict in which gdcm version is used. > > The log says that gdcm-2.6 was found but later the include files > > for gdcm-2.4 are used. > > > > I guess itk needs to be rebuild against gdcm-2.6 since it seems to > > pull in the old version. > > Sounds sensible. Do you need any help for this? Well, it turns out that Emilio from the release team already tried to build ITK against the new gdcm. Which means this bug is now blocked by #808491, which is something for which I need help from upstream ITK and/or GDCM. Best, Gert
Bug#808401: Bug#808401: plastimatch: FTBFS: itkGDCMSeriesFileNames.h:25:29: fatal error: gdcmSerieHelper.h: No such file or directory
Hi Gert, On Sat, Dec 19, 2015 at 09:32:58PM +0100, Gert Wollny wrote: > It seems that there is a conflict in which gdcm version is used. The > log says that gdcm-2.6 was found but later the include files for gdcm > -2.4 are used. > > I guess itk needs to be rebuild against gdcm-2.6 since it seems to pull > in the old version. Sounds sensible. Do you need any help for this? Kind regards Andreas. -- http://fam-tille.de
Bug#808401: [Debian-med-packaging] Bug#808401: plastimatch: FTBFS: itkGDCMSeriesFileNames.h:25:29: fatal error: gdcmSerieHelper.h: No such file or directory
It seems that there is a conflict in which gdcm version is used. The log says that gdcm-2.6 was found but later the include files for gdcm -2.4 are used. I guess itk needs to be rebuild against gdcm-2.6 since it seems to pull in the old version. Best Gert
Bug#808401: plastimatch: FTBFS: itkGDCMSeriesFileNames.h:25:29: fatal error: gdcmSerieHelper.h: No such file or directory
Hi Gregory, I tried to add libgdcm2-dev as additional Build-Depends since the header file is part of this package but this was to simple as a fix and did not worked. Could you find a better fix? Kind regards Andreas. On Sat, Dec 19, 2015 at 05:26:09PM +, Chris Lamb wrote: > Source: plastimatch > Version: 1.6.2+dfsg-2 > Severity: serious > Justification: fails to build from source > User: reproducible-bui...@lists.alioth.debian.org > Usertags: ftbfs > X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org > > Dear Maintainer, > > plastimatch fails to build from source in unstable/amd64: > > [..] > > 1.6.2+dfsg/src/plastimatch/base/itk_image.cxx > In file included from > /home/lamby/temp/cdt.20151219144142.msdP5KPRgJ/plastimatch-1.6.2+dfsg/src/plastimatch/base/itk_dicom_load.cxx:9:0: > /usr/include/ITK-4.8/itkGDCMSeriesFileNames.h:25:29: fatal error: > gdcmSerieHelper.h: No such file or directory > compilation terminated. > src/plastimatch/base/CMakeFiles/plmbase.dir/build.make:425: recipe for > target 'src/plastimatch/base/CMakeFiles/plmbase.dir/itk_dicom_load.cxx.o' > failed > make[3]: *** > [src/plastimatch/base/CMakeFiles/plmbase.dir/itk_dicom_load.cxx.o] Error 1 > make[3]: Leaving directory > '/home/lamby/temp/cdt.20151219144142.msdP5KPRgJ/plastimatch-1.6.2+dfsg/obj-x86_64-linux-gnu' > CMakeFiles/Makefile2:1440: recipe for target > 'src/plastimatch/base/CMakeFiles/plmbase.dir/all' failed > make[2]: *** [src/plastimatch/base/CMakeFiles/plmbase.dir/all] Error 2 > make[2]: Leaving directory > '/home/lamby/temp/cdt.20151219144142.msdP5KPRgJ/plastimatch-1.6.2+dfsg/obj-x86_64-linux-gnu' > Makefile:163: recipe for target 'all' failed > make[1]: *** [all] Error 2 > make[1]: Leaving directory > '/home/lamby/temp/cdt.20151219144142.msdP5KPRgJ/plastimatch-1.6.2+dfsg/obj-x86_64-linux-gnu' > dh_auto_build: make -j8 returned exit code 2 > debian/rules:19: recipe for target 'build' failed > make: *** [build] Error 2 > > [..] > > The full build log is attached. > > > Regards, > > -- > ,''`. > : :' : Chris Lamb > `. `'` la...@debian.org / chris-lamb.co.uk >`- > ___ > Debian-med-packaging mailing list > debian-med-packag...@lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging -- http://fam-tille.de
Bug#808401: plastimatch: FTBFS: itkGDCMSeriesFileNames.h:25:29: fatal error: gdcmSerieHelper.h: No such file or directory
Source: plastimatch Version: 1.6.2+dfsg-2 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org Dear Maintainer, plastimatch fails to build from source in unstable/amd64: [..] 1.6.2+dfsg/src/plastimatch/base/itk_image.cxx In file included from /home/lamby/temp/cdt.20151219144142.msdP5KPRgJ/plastimatch-1.6.2+dfsg/src/plastimatch/base/itk_dicom_load.cxx:9:0: /usr/include/ITK-4.8/itkGDCMSeriesFileNames.h:25:29: fatal error: gdcmSerieHelper.h: No such file or directory compilation terminated. src/plastimatch/base/CMakeFiles/plmbase.dir/build.make:425: recipe for target 'src/plastimatch/base/CMakeFiles/plmbase.dir/itk_dicom_load.cxx.o' failed make[3]: *** [src/plastimatch/base/CMakeFiles/plmbase.dir/itk_dicom_load.cxx.o] Error 1 make[3]: Leaving directory '/home/lamby/temp/cdt.20151219144142.msdP5KPRgJ/plastimatch-1.6.2+dfsg/obj-x86_64-linux-gnu' CMakeFiles/Makefile2:1440: recipe for target 'src/plastimatch/base/CMakeFiles/plmbase.dir/all' failed make[2]: *** [src/plastimatch/base/CMakeFiles/plmbase.dir/all] Error 2 make[2]: Leaving directory '/home/lamby/temp/cdt.20151219144142.msdP5KPRgJ/plastimatch-1.6.2+dfsg/obj-x86_64-linux-gnu' Makefile:163: recipe for target 'all' failed make[1]: *** [all] Error 2 make[1]: Leaving directory '/home/lamby/temp/cdt.20151219144142.msdP5KPRgJ/plastimatch-1.6.2+dfsg/obj-x86_64-linux-gnu' dh_auto_build: make -j8 returned exit code 2 debian/rules:19: recipe for target 'build' failed make: *** [build] Error 2 [..] The full build log is attached. Regards, -- ,''`. : :' : Chris Lamb `. `'` la...@debian.org / chris-lamb.co.uk `- plastimatch.1.6.2+dfsg-2.unstable.amd64.log.txt.gz Description: Binary data
