Your message dated Sun, 10 Jan 2016 09:48:55 +0000 with message-id <e1aiccj-00010r...@franck.debian.org> and subject line Bug#808424: fixed in khmer 2.0+dfsg-2 has caused the Debian Bug report #808424, regarding khmer: FTBFS: assumes a real home directory to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 808424: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=808424 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: khmer Version: 2.0+dfsg-1 Severity: serious Justification: fails to build from source Automated builds of khmer have been failing: ln -sf "`pwd`"/.pybuild/pythonX.Y_*/build/khmer/*.so khmer && \ ./setup.py develop --user && ./setup.py build_sphinx running develop error: [Errno 13] Permission denied: '/sbuild-nonexistent' debian/rules:17: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 1 make[1]: Leaving directory '/«BUILDDIR»/khmer-2.0+dfsg' debian/rules:14: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 If the "develop --user" step is mandatory, please arrange to run it (and anything dependent on any resultant setup) with HOME set to some temporary directory in the build area. Thanks!
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--- Begin Message ---Source: khmer Source-Version: 2.0+dfsg-2 We believe that the bug you reported is fixed in the latest version of khmer, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 808...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Michael R. Crusoe <cru...@ucdavis.edu> (supplier of updated khmer package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 20 Dec 2015 01:24:57 -0800 Source: khmer Binary: khmer-common khmer liboxli1 liboxli-dev Architecture: source all amd64 Version: 2.0+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Michael R. Crusoe <cru...@ucdavis.edu> Description: khmer - in-memory DNA sequence kmer counting, filtering & graph traversal khmer-common - common files for the khmer project tools liboxli-dev - in-memory DNA sequence analysis dev library liboxli1 - in-memory DNA sequence analysis library from the khmer project Closes: 808424 Changes: khmer (2.0+dfsg-2) unstable; urgency=medium . [Michael Crusoe] * Be explicit about architecture support * Set home directory for building the docs (Closes: #808424) . [Kevin Murray] * Ensure that liboxli-dev depends on liboxli1 Checksums-Sha1: 7e2f493c0fbe6972b311cfe13ca7ba0c8c56ba27 2713 khmer_2.0+dfsg-2.dsc d07e6f5af5445ce09a7476cbbe69907be27521cb 10380 khmer_2.0+dfsg-2.debian.tar.xz 75e26d13493a24ac53e6757e6d9f1078762db87d 239986 khmer-common_2.0+dfsg-2_all.deb a664c80c241552665c0fb31b49bb134cdc78d924 3498316 khmer-dbgsym_2.0+dfsg-2_amd64.deb 0d8b68c2964861a8a6a248cd3da2b15749efccd4 5958330 khmer_2.0+dfsg-2_amd64.deb b1450a773dc07b87d732347d5f1eabe633bf9fcf 277146 liboxli-dev_2.0+dfsg-2_amd64.deb 4e0d7d78dfd67ab67f9b2f67b1cb6ba2147558b6 1525482 liboxli1-dbgsym_2.0+dfsg-2_amd64.deb 6f1918bc7359bb811f2137c0ac923ce29e569228 222630 liboxli1_2.0+dfsg-2_amd64.deb Checksums-Sha256: 64ab54b2e393451e708e8a8c5816badb3b3fb97eb5c2872c8928125bb6c13e74 2713 khmer_2.0+dfsg-2.dsc 537ce34b2958dec8209e7a946049ba4d67e06cf65eea306a7cdf2483dedada1b 10380 khmer_2.0+dfsg-2.debian.tar.xz 819bafe3c52fdcca4699316fe90ddd2765d119b3bac9a51c328023ed76b73028 239986 khmer-common_2.0+dfsg-2_all.deb 19d44090df20c04b0ebeec5fa4091eacf1d3558e9092ded48397a3a44bbef42d 3498316 khmer-dbgsym_2.0+dfsg-2_amd64.deb 21d119be21b29b08aa0b7e7d54ef4f04512a753a0e1fd3b188f1973ddef5a27d 5958330 khmer_2.0+dfsg-2_amd64.deb 63be3f6feae74a62cc0b7e542319e3ad80a9b1f55174f90c9bd8203a677eaedc 277146 liboxli-dev_2.0+dfsg-2_amd64.deb e07d8b62517f8d520d3917989262e39a63d32144f26d3c2747406685166283c7 1525482 liboxli1-dbgsym_2.0+dfsg-2_amd64.deb 29cecd4bc54104dd77643587b652c77137d0eb58a2b13434c13377f964cce74b 222630 liboxli1_2.0+dfsg-2_amd64.deb Files: 3efaf0817c6d6a7adf923880c5173290 2713 science optional khmer_2.0+dfsg-2.dsc 8be8530a4a98a1a57891a908da546805 10380 science optional khmer_2.0+dfsg-2.debian.tar.xz 84ad0c7100d5d491c7dedbbc4b45ab68 239986 science optional khmer-common_2.0+dfsg-2_all.deb fcddd4931873b8f6e5e60d7b11285fb6 3498316 debug extra khmer-dbgsym_2.0+dfsg-2_amd64.deb eaa3a34fd43da1a5c596688a78728c69 5958330 python optional khmer_2.0+dfsg-2_amd64.deb f4fc3b8e2bea8e9a329f2c3f7b144a24 277146 libdevel optional liboxli-dev_2.0+dfsg-2_amd64.deb b6b99e3979ab0e05bc4709ed7d272d0f 1525482 debug extra liboxli1-dbgsym_2.0+dfsg-2_amd64.deb 661644e4526ac355f50a779939943173 222630 libs optional liboxli1_2.0+dfsg-2_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJWkiWSAAoJEFeKBJTRxkbRfCgP/3t1MAGGXoBUg5yvvBHC9rTw li/2hJUnts9ogtMFR32cZRIzUOZTZS6z/3PpZwwpPnB5GJB5FXaj0kry2qXfV+tw slD4itwoVaL09OwYatM5xIZl/Pqa8xKX7nz653/X8V10xiaZCTAgNrcf9TpJBVCX N5jEIsEOSqUk37/cl2MTaiWVcjGduMNTINlHfWqH7eIztj8pO3J0tHnsW/BFRINB 5ruJqH0glgev/CYcmGyURk5LKr8Pfes9Hj9x43EmWkJz/kmsK76dlLzANQX23srN RvsCnRb7S1ZYg23nSkMwL5cf6ymhHYfiHF7uqcXPrRwF9Gd1z1jaEtodAdQ5nc4R CpHmnvM7Q2Q7Pr7qLPHrYCXbkLiF/tAeDeAcXcpqddFwQp7xVTzDJiGFABPvqyXb wnbaf9nz/Nf/n/PuvEailm+/hgGsTEyC3FTVXYO3kxwrg07ZtNQlNrye80v6az9k dktgCrH0YQ7ZhNN+RO1D1IS7C07ZFMGrDzMsRE1V7rFmrs+WMZeFCJzXoo+NhVPv f83D0ic4CbwaPzaaxFmr7gemZjW17/FJhacW2eC3nxqg91eYiLqLxY3fKWx66qmg oOtl7ryxVAiUgaT9yIMsXvXIMK3yZbdm5UvQkrvqEzfEm+CQsQGeGzwzsr401jbf hDvQJ0wnHbRv0thTHLUx =ZF34 -----END PGP SIGNATURE-----
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