Bug#816101: petsc: FTBFS on mipsel - timeout while running the test suite

[Drew Parsons]

As far as I can tell this build failure is just some ephemeral problem
on the build machine.  The same code built before, and builds now on
mips and other architectures. Trigger a rebuild, maybe it will work
now.

The orte/plm warning is a red herring.  All architectures have the same
problem. It's a warning not an error.  In any case, I've uploaded
v3.6.3 and invoked plm rather than orte.  Hopefully once the new
version is pushed through, the mipsel build will clear.

Drew

Bug#816101: petsc: FTBFS on mipsel - timeout while running the test suite

[Andreas Beckmann]

Source: petsc
Version: 3.6.2.dfsg1-3
Severity: serious
Justification: fails to build from source (but built successfully in the past)

Hi,

petsc FTBFS on mipsel:

https://buildd.debian.org/status/fetch.php?pkg=petsc&arch=mipsel&ver=3.6.2.dfsg1-3%2Bb3&stamp=1455322055

dh_auto_test -plibpetsc3.6.2-dbg -- \
  PETSC_DIR=/«PKGBUILDDIR» PETSC_ARCH=mipsel-linux-gnu-real-debug \
  LD_LIBRARY_PATH=:/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib
make -j1 test PETSC_DIR=/«PKGBUILDDIR» 
PETSC_ARCH=mipsel-linux-gnu-real-debug 
LD_LIBRARY_PATH=:/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib
make[2]: Entering directory '/«PKGBUILDDIR»'
Running test examples to verify correct installation
Using PETSC_DIR=/«PKGBUILDDIR» and PETSC_ARCH=mipsel-linux-gnu-real-debug

r detected during compile or link!***
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/«PKGBUILDDIR»/src/snes/examples/tutorials ex19
cxx
 -o ex19.o -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security  
 -fPIC  -Wdate-time -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/include 
-I/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/include -I/usr/include/suitesparse 
-I/usr/include/superlu -I/usr/include -I/usr/include/scotch 
-I/usr/lib/openmpi/include 
-I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent 
-I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include 
-I/usr/lib/openmpi/include/openmpi  -Wdate-time -D_FORTIFY_SOURCE=2  
`pwd`/ex19.c
mpicxx -Wl,-z,relro -Wl,--no-as-needed -g -O2 -fstack-protector-strong -Wformat 
-Werror=format-security   -o ex19  ex19.o 
-L/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib 
-L/«PKGBUILDDIR»/mipsel-linux-gnu-real-debug/lib  -lpetsc_real -ldmumps 
-lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lumfpack -lamd -lcholmod 
-lklu -lsuperlu -lscalapack-openmpi -L/usr/lib -lHYPRE_utilities 
-lHYPRE_struct_mv -lHYPRE_struct_ls -lHYPRE_sstruct_mv -lHYPRE_sstruct_ls 
-lHYPRE_IJ_mv -lHYPRE_parcsr_ls -llapack -lblas -lptesmumps -lptscotch 
-lptscotcherr -lfftw3 -lfftw3_mpi -lhwloc -lssl -lcrypto -lm 
-L/usr/lib/openmpi/lib -L/usr/lib/gcc/mipsel-linux-gnu/5 
-L/usr/lib/mipsel-linux-gnu -L/lib/mipsel-linux-gnu -lmpi_usempif08 
-lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -lgfortran -lm -lmpi_cxx 
-lstdc++ -L/usr/lib/openmpi/lib -L/usr/lib/gcc/mipsel-linux-gnu/5 
-L/usr/lib/mipsel-linux-gnu -L/lib/mipsel-linux-gnu -L/usr/lib/mipsel-linux-gnu 
-ldl -L/usr/lib/openmpi/lib -lmpi -lgcc_s -lpthread -ldl 
/bin/rm -f ex19.o
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process
See http://www.mcs.anl.gov/petsc/documentation/faq.html
--
A deprecated MCA variable value was specified in the environment or
on the command line.  Deprecated MCA variables should be avoided;
they may disappear in future releases.

  Deprecated variable: orte_rsh_agent
  New variable:plm_rsh_agent
--
lid velocity = 0.0016, prandtl # = 1, grashof # = 1
Number of SNES iterations = 2
make[2]: *** wait: No child processes.  Stop.
make[2]: *** Waiting for unfinished jobs
make[2]: *** wait: No child processes.  Stop.
debian/rules:181: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Terminated
E: Caught signal ‘Terminated’: terminating immediately
debian/rules:106: recipe for target 'build-arch' failed
make: *** [build-arch] Terminated
Build killed with signal TERM after 150 minutes of inactivity
*