Processed: Re: Bug#822701: [Debian-med-packaging] Bug#822701: samtools: FTBFS: UNEXPECTED PASS: Task worked when we expected failure;
Processing control commands: > tag -1 +pending Bug #822701 [src:samtools] samtools 1.3 fails to build against htslib 1.3.1. Ignoring request to alter tags of bug #822701 to the same tags previously set -- 822701: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=822701 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#822701: [Debian-med-packaging] Bug#822701: samtools: FTBFS: UNEXPECTED PASS: Task worked when we expected failure;
Control: tag -1 +pending Le Wed, Apr 27, 2016 at 10:12:31AM +0900, Charles Plessy a écrit : > > Perhaps we also need htslib 1.3.1 to "Break" samtools < 1.3.1... I cloned > this bug to address that issue. Hi all, I added: "Breaks: samtools (<< 1.3.1)". I think that it would be better to update the package before backporting it to Jessie. Are there other opinions, or other changes to make to the package ? Cheers, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan
Bug#822701: [Debian-med-packaging] Bug#822701: samtools: FTBFS: UNEXPECTED PASS: Task worked when we expected failure;
clone 822701 -2 reassign -2 htslib retitle -2 htslib 1.3.1 breaks samtools 1.3, at least at build time. retitle 822701 samtools 1.3 fails to build against htslib 1.3.1. tag 822701 +pending Le Tue, Apr 26, 2016 at 07:02:28PM +0100, Chris Lamb a écrit : > Source: samtools > Version: 1.3-1 > Severity: serious > Justification: fails to build from source > User: reproducible-bui...@lists.alioth.debian.org > Usertags: ftbfs > X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org Hi Chris, this was a race condition where you built samtools 1.3-1 against htslib 1.3.1-1. Now, with samtools 1.3.1-1 which entered the archive yesterday, the reproducibility build should work (as it did on the buildds). I have tightened the build-dependancy to libhts-dev >= 1.3.1, just in case: since we see that samtools 1.3 does not work with htslib 1.3.1, I worry that the converse will be true as well. Perhaps we also need htslib 1.3.1 to "Break" samtools < 1.3.1... I cloned this bug to address that issue. Have a nice day, -- Charles
